CmoCh10G002390.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G002390.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr10: 1072901 .. 1073368 (+)
Sequence length366
RNA-Seq ExpressionCmoCh10G002390.1
SyntenyCmoCh10G002390.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAAGCAATCAAGAGGCTCTAAAGATGGTGAGAAAAAGAAGAGCGATCTCTATGACTATGAAGAGTTTCAGGCAATCATTGGTCACATCAACAAAGCCACTCATTTCAGTCCCAATCTCTTGTCTAACCATTTGATCAATTCTCCATTTTATCGTCAACGTTTGAATCAAATTTATAAACAAAGTAGCGTTGGCTCGACTAAGAGGATCACATGCCAAGGTTGATTTCACTTACTCGAAAGTTATGGTCAATTCTTCCTTCTTTTAATTCAATTCTCGAACTTTTTAGCACTTTTTAGCTTATCAATTTTATTATGTTCAGGTTGTCAACAACAAAGAAAAATAGAGATGGTTAGAGGAACCACAAGGCAAAAGGGGGTAATTTCACTTACCACCGGGAAGTTATGGAAGCAAATTAAGCAAAACTTGGCCAATATTCTTTCGAAGAAAGATGTGAAGTAA

mRNA sequence

ATGGAAGAAAAGCAATCAAGAGGCTCTAAAGATGGTGAGAAAAAGAAGAGCGATCTCTATGACTATGAAGAGTTTCAGGCAATCATTGGTCACATCAACAAAGCCACTCATTTCAGTCCCAATCTCTTGTCTAACCATTTGATCAATTCTCCATTTTATCGTCAACGTTTGAATCAAATTTATAAACAAAGTAGCGTTGGCTCGACTAAGAGGATCACATGCCAAGGTTGTCAACAACAAAGAAAAATAGAGATGGTTAGAGGAACCACAAGGCAAAAGGGGGTAATTTCACTTACCACCGGGAAGTTATGGAAGCAAATTAAGCAAAACTTGGCCAATATTCTTTCGAAGAAAGATGTGAAGTAA

Coding sequence (CDS)

ATGGAAGAAAAGCAATCAAGAGGCTCTAAAGATGGTGAGAAAAAGAAGAGCGATCTCTATGACTATGAAGAGTTTCAGGCAATCATTGGTCACATCAACAAAGCCACTCATTTCAGTCCCAATCTCTTGTCTAACCATTTGATCAATTCTCCATTTTATCGTCAACGTTTGAATCAAATTTATAAACAAAGTAGCGTTGGCTCGACTAAGAGGATCACATGCCAAGGTTGTCAACAACAAAGAAAAATAGAGATGGTTAGAGGAACCACAAGGCAAAAGGGGGTAATTTCACTTACCACCGGGAAGTTATGGAAGCAAATTAAGCAAAACTTGGCCAATATTCTTTCGAAGAAAGATGTGAAGTAA

Protein sequence

MEEKQSRGSKDGEKKKSDLYDYEEFQAIIGHINKATHFSPNLLSNHLINSPFYRQRLNQIYKQSSVGSTKRITCQGCQQQRKIEMVRGTTRQKGVISLTTGKLWKQIKQNLANILSKKDVK
Homology
BLAST of CmoCh10G002390.1 vs. ExPASy TrEMBL
Match: A0A0A0KW83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.0e-26
Identity = 73/124 (58.87%), Postives = 95/124 (76.61%), Query Frame = 0

Query: 1   MEEKQSRGSKDGEKKKSDLYDYEEFQAIIGHINKATHFSPNLLSNHLINSPFYRQRLNQI 60
           MEE+QS   KD     S+LYDY+EF+A+IGH+NKATHFSP++LSNHLINSPFYRQRLN+I
Sbjct: 1   MEEQQSGAPKDCH---SNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEI 60

Query: 61  YKQSSVGSTKRIT-CQGCQQQRKIEMVRGTTRQKGVISLTT--GKLWKQIKQNLANILSK 120
           YK +S+GSTK+I   +  +Q+  IE  +  T+Q+G+IS  +  G+LWKQIK  L  IL K
Sbjct: 61  YK-NSIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPK 120

Query: 121 KDVK 122
           KD+K
Sbjct: 121 KDLK 120

BLAST of CmoCh10G002390.1 vs. ExPASy TrEMBL
Match: A0A2P5D6L7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092670 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 0

Query: 15  KKSDLYDYEEFQAIIGHINKATH----FSPNLLSNHLINSPFYRQRLNQIYKQSSVGSTK 74
           K S LYD  E QA++  +NKA      FSP  + N  + SPFYR+RLN+IY+++   S K
Sbjct: 44  KGSSLYDSYELQAVVHQLNKAIQGSKAFSPPYIYN--LKSPFYRKRLNRIYRENR-ESPK 103

Query: 75  RITCQGCQQQRKIEMVRGTTRQKGVISLTTG---KLWKQIKQNL 112
            +TC        ++ +   T  +G   +T G   +LW+++K+ L
Sbjct: 104 TLTCSNLSSSTTLDDI---TSNRGAWMVTRGVVTRLWEKVKRGL 141

BLAST of CmoCh10G002390.1 vs. ExPASy TrEMBL
Match: A0A2P5DAP5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_257060 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.1e-04
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 15  KKSDLYDYEEFQAIIGHINKATH----FSPNLLSNHLINSPFYRQRLNQIYKQSSVGSTK 74
           K S LYD  E QA++  +NKA      FSP  + N  + SPFYR+RLN+IY+++   S K
Sbjct: 44  KGSSLYDSYELQAVVHQLNKAIRGSKAFSPPYIYN--LKSPFYRKRLNRIYRENK-ESPK 103

Query: 75  RITCQGCQQQRKIEMVRGTTRQKGVISLTTG---KLWKQIKQNL 112
            +TC        ++     T  +G   +T G   +LW+++K+ L
Sbjct: 104 TLTCSNVSSSTILD--DSKTSNRGAWMVTRGVVTRLWEKVKRGL 142

BLAST of CmoCh10G002390.1 vs. NCBI nr
Match: KGN53885.1 (hypothetical protein Csa_011823 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 73/124 (58.87%), Postives = 95/124 (76.61%), Query Frame = 0

Query: 1   MEEKQSRGSKDGEKKKSDLYDYEEFQAIIGHINKATHFSPNLLSNHLINSPFYRQRLNQI 60
           MEE+QS   KD     S+LYDY+EF+A+IGH+NKATHFSP++LSNHLINSPFYRQRLN+I
Sbjct: 1   MEEQQSGAPKDCH---SNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEI 60

Query: 61  YKQSSVGSTKRIT-CQGCQQQRKIEMVRGTTRQKGVISLTT--GKLWKQIKQNLANILSK 120
           YK +S+GSTK+I   +  +Q+  IE  +  T+Q+G+IS  +  G+LWKQIK  L  IL K
Sbjct: 61  YK-NSIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPK 120

Query: 121 KDVK 122
           KD+K
Sbjct: 121 KDLK 120

BLAST of CmoCh10G002390.1 vs. NCBI nr
Match: PON68950.1 (hypothetical protein PanWU01x14_092670 [Parasponia andersonii])

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-04
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 0

Query: 15  KKSDLYDYEEFQAIIGHINKATH----FSPNLLSNHLINSPFYRQRLNQIYKQSSVGSTK 74
           K S LYD  E QA++  +NKA      FSP  + N  + SPFYR+RLN+IY+++   S K
Sbjct: 44  KGSSLYDSYELQAVVHQLNKAIQGSKAFSPPYIYN--LKSPFYRKRLNRIYRENR-ESPK 103

Query: 75  RITCQGCQQQRKIEMVRGTTRQKGVISLTTG---KLWKQIKQNL 112
            +TC        ++ +   T  +G   +T G   +LW+++K+ L
Sbjct: 104 TLTCSNLSSSTTLDDI---TSNRGAWMVTRGVVTRLWEKVKRGL 141

BLAST of CmoCh10G002390.1 vs. NCBI nr
Match: PON70340.1 (hypothetical protein TorRG33x02_257060 [Trema orientale])

HSP 1 Score: 54.3 bits (129), Expect = 8.5e-04
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 15  KKSDLYDYEEFQAIIGHINKATH----FSPNLLSNHLINSPFYRQRLNQIYKQSSVGSTK 74
           K S LYD  E QA++  +NKA      FSP  + N  + SPFYR+RLN+IY+++   S K
Sbjct: 44  KGSSLYDSYELQAVVHQLNKAIRGSKAFSPPYIYN--LKSPFYRKRLNRIYRENK-ESPK 103

Query: 75  RITCQGCQQQRKIEMVRGTTRQKGVISLTTG---KLWKQIKQNL 112
            +TC        ++     T  +G   +T G   +LW+++K+ L
Sbjct: 104 TLTCSNVSSSTILD--DSKTSNRGAWMVTRGVVTRLWEKVKRGL 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KW835.0e-2658.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1[more]
A0A2P5D6L71.4e-0435.58Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092670 PE... [more]
A0A2P5DAP54.1e-0435.58Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_257060 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KGN53885.11.0e-2558.87hypothetical protein Csa_011823 [Cucumis sativus][more]
PON68950.12.9e-0435.58hypothetical protein PanWU01x14_092670 [Parasponia andersonii][more]
PON70340.18.5e-0435.58hypothetical protein TorRG33x02_257060 [Trema orientale][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh10G002390CmoCh10G002390gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh10G002390.1:exon:6534CmoCh10G002390.1:exon:6534exon
CmoCh10G002390.1:exon:6535CmoCh10G002390.1:exon:6535exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh10G002390.1:cdsCmoCh10G002390.1:cdsCDS
CmoCh10G002390.1:cdsCmoCh10G002390.1:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh10G002390.1CmoCh10G002390.1-proteinpolypeptide