CmoCh09G004390.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G004390.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr09: 1982840 .. 1984014 (-)
Sequence length840
RNA-Seq ExpressionCmoCh09G004390.1
SyntenyCmoCh09G004390.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCAGCTCATGATTTCGAAGCTCGGGGGACTGAATCGGCTCGCCGAGTTTTGTACGCAGAGAAGAGAAGGTTCTCGAAATGTCTCACTGTGACAGAGGATCGAAGAAGCTAAACCCAACGATTTTACACCCTTTGTACATATACATCATTTGCTGTGGAAGGAGAATTTCGGACATTTTTATTTTGAATTTGGACCAAACGAAAAGAAAAATAAAAAGATCATAATTCGAAGATTAATTTCAAGACGAAGTAATCTGTAACTGCCATCAATTTGCAATCGGTTCATAACGCCGTTGGATGAGAATTACGTCCCGTTCAAATCCGTCGTGTGCAGCGTTGGGATTCCGTCTGTGCCGTCGTCGGCTCCGTTCGTCGTGATTCTCGTCCCCGTCGTTTCACGTGTTCCGTTTACTCCGTCCCGTTCATTCCGGGTCCAGGTATTTTTTTAAATTTTATTTTCCATCCGTATCAGTTTATTTATTTATTTCTTTCTTTATTTTGGTGCAGAGTGCAGGACGTGCCGCCTGGTGATTATTATGCCGTCATGGTTCTTTGGCTGAGTTTCTTTTTATTCTGAGATGAAATCTGAAACCCATGAAACTTTGACCTATGACTTTCTCGCCGGTTGAAGATGAAGATTAGACATTAACTGTGACCGACTTACTGGGCCCGGGTCGGGCCCATTGGACCTTATTCCTCTGAGGGGACTTTTAGAAATAAATTAATTAATTAGGATAAAATATAATTATTAAAAGAAAAACAGAAAAGAAAGTTGATGGTGATTAAGGGAAGCTCGAAGAAGGAAAGCCTGAATAAATTTGACAGCACAGAGATAGGGTGGAAAATAATTAAGCGTGGAGATAGAAAGAGAAACTAACCATAAGGGGAAACCATAATAAGGAATTTTTTTAAAAAAATATAAATAATAGGAATTAAAAAAAAAGGAAAAAATGGGACCATTTTGTGCTGGATATGAGGGTGATGGTTGAACGGACAAAATAGAAATGGTGGGGAACACTCAATATGGGAAATGAGTGGGACCCACCCAACTACAAGGCGGTGCCCCCAAGATTCTTGTGACCCTAATGGGAGCAACTTTGTGGATCTGTTCAAAATTTTATTATTAAAAAAATATTCTTTCTATTTTCATTTTAAGAGAGAATTTTGTAG

mRNA sequence

ATGGGTTCAGCTCATGATTTCGAAGCTCGGGGGACTGAATCGGCTCGCCGAGTTTTGTACGCAGAGAAGAGAAGCGTTGGGATTCCGTCTGTGCCGTCGTCGGCTCCGTTCGTCGTGATTCTCGTCCCCGTCGTTTCACGTGTTCCGTTTACTCCGTCCCGTTCATTCCGGGTCCAGAGTGCAGGACGTGCCGCCTGGTGATTATTATGCCGTCATGGTTCTTTGGCTGAGTTTCTTTTTATTCTGAGATGAAATCTGAAACCCATGAAACTTTGACCTATGACTTTCTCGCCGGTTGAAGATGAAGATTAGACATTAACTGTGACCGACTTACTGGGCCCGGGTCGGGCCCATTGGACCTTATTCCTCTGAGGGGACTTTTAGAAATAAATTAATTAATTAGGATAAAATATAATTATTAAAAGAAAAACAGAAAAGAAAGTTGATGGTGATTAAGGGAAGCTCGAAGAAGGAAAGCCTGAATAAATTTGACAGCACAGAGATAGGGTGGAAAATAATTAAGCGTGGAGATAGAAAGAGAAACTAACCATAAGGGGAAACCATAATAAGGAATTTTTTTAAAAAAATATAAATAATAGGAATTAAAAAAAAAGGAAAAAATGGGACCATTTTGTGCTGGATATGAGGGTGATGGTTGAACGGACAAAATAGAAATGGTGGGGAACACTCAATATGGGAAATGAGTGGGACCCACCCAACTACAAGGCGGTGCCCCCAAGATTCTTGTGACCCTAATGGGAGCAACTTTGTGGATCTGTTCAAAATTTTATTATTAAAAAAATATTCTTTCTATTTTCATTTTAAGAGAGAATTTTGTAG

Coding sequence (CDS)

ATGGGTTCAGCTCATGATTTCGAAGCTCGGGGGACTGAATCGGCTCGCCGAGTTTTGTACGCAGAGAAGAGAAGCGTTGGGATTCCGTCTGTGCCGTCGTCGGCTCCGTTCGTCGTGATTCTCGTCCCCGTCGTTTCACGTGTTCCGTTTACTCCGTCCCGTTCATTCCGGGTCCAGAGTGCAGGACGTGCCGCCTGGTGA

Protein sequence

MGSAHDFEARGTESARRVLYAEKRSVGIPSVPSSAPFVVILVPVVSRVPFTPSRSFRVQSAGRAAW
Homology
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BLAST of CmoCh09G004390.1 vs. NCBI nr
Match: KAG6591554.1 (hypothetical protein SDJN03_13900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 8.1e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 4   AHDFEARGTESARRVLYAEKRSVGIPSVPSSAPFVVILVPVVSRVPFTPSRSFRVQSAGR 63
           AHDFEARGTESARRVLYAEKRSVGIPSVPSSAPFVVILVPVVSRVPFTPSRSFRVQSAGR
Sbjct: 184 AHDFEARGTESARRVLYAEKRSVGIPSVPSSAPFVVILVPVVSRVPFTPSRSFRVQSAGR 243

Query: 64  AAW 67
           AAW
Sbjct: 244 AAW 246

The following BLAST results are available for this feature:
BLAST of CmoCh09G004390.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G004390.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G004390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591554.18.1e-25100.00hypothetical protein SDJN03_13900, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh09G004390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh09G004390CmoCh09G004390gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh09G004390.1:exon:4321CmoCh09G004390.1:exon:4321exon
CmoCh09G004390.1:exon:4320CmoCh09G004390.1:exon:4320exon
CmoCh09G004390.1:exon:4319CmoCh09G004390.1:exon:4319exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh09G004390.1:three_prime_utrCmoCh09G004390.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh09G004390.1:cdsCmoCh09G004390.1:cds_3CDS
CmoCh09G004390.1:cdsCmoCh09G004390.1:cds_2CDS
CmoCh09G004390.1:cdsCmoCh09G004390.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh09G004390.1CmoCh09G004390.1-proteinpolypeptide