CmoCh08G004260.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G004260.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein L19
Location	Cmo_Chr08: 2615507 .. 2617457 (-)
Sequence length	998
RNA-Seq Expression	CmoCh08G004260.1
Synteny	CmoCh08G004260.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCTAAAACCCTAGAAGGCCACTCCTTTTCTCCTTTGTAAGCTTATCTTCTCTGCAACAAGCGGCCGGGAAGGGAGGAGAAAAAATGGTTTCGCTAAAGCTCCAGAAGCGGCTCGCCGCCAGTGTCCTCAAGTGCGGGAAAGGCAAGGTCTGGCTCGATCCCAATGAGGTCAACGAAATCTCCATGGCGAATTCTCGTACGCTTTCTCCATCTATGTTCACTTAGATTCTATCTATGTTCAATCTCCATGTTGTTGCTTGAAGTTTTCTGTTCGTTTGATTTCATGATCTGAAGATTGTTCTGTGTCCCTTAGGTTTTCTAGATGAAATACGTTTTCGGATCTGAAAATTTTGCCCTAGGTTAAGTCTGGAATTGTGATTCCTTGTTATTTTTCTTGGTTATGGTAATTATACTATTTTGTTTCCGTCGTCGTTAGTTGAAACCCTAGTTAATCCCTTGGCTGAATGATTTGCAGTAGATTGCTAGGAGATGATATCATTGAGTTGCATAGGAAATTGCTGTTATTGAACAAAAATCTTGTTTAAGTTTTAAAAAACTATTTCCCTCAGATTCTTCGCATAGCGAGGAAGGCACTTTCGCCATGGAGTTTGTTTCGCTTTTACGCCTTGTTACACTTCCAAATTCCACAAGCTCTATCTTCTGTCGGGAGTAATGTTTATCTATAATATGTTATTACTGATATGTAACTACTGATTTTTAGCAAAAATATTGTCATTTTGTGATCTTTAGTACCTGATTAACAGATAATACTGTTTGTGACTCGGTTGCTAATTAATGTCTGGATTGTTGAGTACAGGCCAAAATATTAGGAAGTTGGTCAAGGATGGTTTCGTCATCAGGAAGCCAACCAAGATCCACTCCCGTTCTCGAGCACGCCGTATGAAAGAGGCCAAGAGAAAGGGTCGACACTCTGGATATGGTACTTTTCTTCTGAAGCCTTGATTTATGTATATTATAGAGAAGCTTTATGGTGTTTAATCTTATTTTAGTACTCCCTATGCATATATCACTGTTTTTCCCTTTTAGACACAAAGTCAAGAACTTGATGAGCACTATTCTGTTTTTGTACTAAAATTCACAGTTTAAACCTTATTCAGGTAAGAGAAAGGGTACCAGGGAGGCAAGGTTGCCGACCAAGATCCTCTGGATGCGGAGAATGCGTGTTCTCAGGAGATTGCTCCGCAAATATAGAGAATCCAAGAAGATCGACAAGCATATGTATCATGACATGTACATGAAAGTTAAGGGTAATGTCTTTAAGAACAAGCGTGTGTTGATGGAGAGCATCCACAAGTCGAAGGCCGAGAAGGCAAGAGAGAAGACATTGTCAGACCAATTCGAGGCTAAGAGGGCCAAGAACAAAGCCAGCAGGGAAAGGAAGTTTGCTCGGAGGGAGGAACGATTGGCACAGGTTTCTAACTCTTGACTGTTAACAACATAATGTTTGTACCTTCTATGCTGTTGTAATTCGTGTTTGTTCGATGTTATAGGGACCTGGGGAGAAACAACCACCCGTGACATCAGCAGCTCAACCTGCTGCTCAATCTACTCAGTAAGAATTAACCGTGATAATCTATGTAAATCTATCTTCATTTTGCGATACTAAGTATCGGTTCGTTATGTGCAGGCTATCGAAGAAATCGAAGAAGTGAGAATTTTACAAAGGAGCATCGAAGGGGAAGGTTTACTTCTGATGGCACCATTATTCTAGAGTAGTAGTGTTTTGAGGAGGGCTTTTGCAGCTTTTTTGTTCAGTTTGGACCTTGTTACTTCATCATGTCGAAGACACCAAGGATTTTAAGCCTGGTAATTTTGTTAGTTTATGTTCATTGTTTTTTGTCAACCGTGTTTGCTGAATGGAATTTATTGGAAGATTAAATGCATATTGATTGATCAAAGGTGAGCTTTACGTGGTTTTGAATTTGCAG

mRNA sequence

ACTTCTAAAACCCTAGAAGGCCACTCCTTTTCTCCTTTGTAAGCTTATCTTCTCTGCAACAAGCGGCCGGGAAGGGAGGAGAAAAAATGGTTTCGCTAAAGCTCCAGAAGCGGCTCGCCGCCAGTGTCCTCAAGTGCGGGAAAGGCAAGGTCTGGCTCGATCCCAATGAGGTCAACGAAATCTCCATGGCGAATTCTCGCCAAAATATTAGGAAGTTGGTCAAGGATGGTTTCGTCATCAGGAAGCCAACCAAGATCCACTCCCGTTCTCGAGCACGCCGTATGAAAGAGGCCAAGAGAAAGGGTCGACACTCTGGATATGGTAAGAGAAAGGGTACCAGGGAGGCAAGGTTGCCGACCAAGATCCTCTGGATGCGGAGAATGCGTGTTCTCAGGAGATTGCTCCGCAAATATAGAGAATCCAAGAAGATCGACAAGCATATGTATCATGACATGTACATGAAAGTTAAGGGTAATGTCTTTAAGAACAAGCGTGTGTTGATGGAGAGCATCCACAAGTCGAAGGCCGAGAAGGCAAGAGAGAAGACATTGTCAGACCAATTCGAGGCTAAGAGGGCCAAGAACAAAGCCAGCAGGGAAAGGAAGTTTGCTCGGAGGGAGGAACGATTGGCACAGGGACCTGGGGAGAAACAACCACCCGTGACATCAGCAGCTCAACCTGCTGCTCAATCTACTCAGCTATCGAAGAAATCGAAGAAGTGAGAATTTTACAAAGGAGCATCGAAGGGGAAGGTTTACTTCTGATGGCACCATTATTCTAGAGTAGTAGTGTTTTGAGGAGGGCTTTTGCAGCTTTTTTGTTCAGTTTGGACCTTGTTACTTCATCATGTCGAAGACACCAAGGATTTTAAGCCTGGTAATTTTGTTAGTTTATGTTCATTGTTTTTTGTCAACCGTGTTTGCTGAATGGAATTTATTGGAAGATTAAATGCATATTGATTGATCAAAGGTGAGCTTTACGTGGTTTTGAATTTGCAG

Coding sequence (CDS)

ATGGTTTCGCTAAAGCTCCAGAAGCGGCTCGCCGCCAGTGTCCTCAAGTGCGGGAAAGGCAAGGTCTGGCTCGATCCCAATGAGGTCAACGAAATCTCCATGGCGAATTCTCGCCAAAATATTAGGAAGTTGGTCAAGGATGGTTTCGTCATCAGGAAGCCAACCAAGATCCACTCCCGTTCTCGAGCACGCCGTATGAAAGAGGCCAAGAGAAAGGGTCGACACTCTGGATATGGTAAGAGAAAGGGTACCAGGGAGGCAAGGTTGCCGACCAAGATCCTCTGGATGCGGAGAATGCGTGTTCTCAGGAGATTGCTCCGCAAATATAGAGAATCCAAGAAGATCGACAAGCATATGTATCATGACATGTACATGAAAGTTAAGGGTAATGTCTTTAAGAACAAGCGTGTGTTGATGGAGAGCATCCACAAGTCGAAGGCCGAGAAGGCAAGAGAGAAGACATTGTCAGACCAATTCGAGGCTAAGAGGGCCAAGAACAAAGCCAGCAGGGAAAGGAAGTTTGCTCGGAGGGAGGAACGATTGGCACAGGGACCTGGGGAGAAACAACCACCCGTGACATCAGCAGCTCAACCTGCTGCTCAATCTACTCAGCTATCGAAGAAATCGAAGAAGTGA

Protein sequence

MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERLAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK

Homology

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BLAST of CmoCh08G004260.1 vs. ExPASy Swiss-Prot
Match: Q9SRX2 (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.4e-89
Identity = 183/214 (85.51%), Postives = 195/214 (91.12%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASV+KCGKGKVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR+MK AK KGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKIDKHMY
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQGPGEKQPPVTS---AAQPAAQSTQLSKKSKK 212
           LA+GPG    PV +   AA PA  +    KKSKK
Sbjct: 181 LAKGPGGDVAPVAAPAPAATPAPTAAVPKKKSKK 214

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BLAST of CmoCh08G004260.1 vs. ExPASy Swiss-Prot
Match: P49693 (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 323.9 bits (829), Expect = 1.3e-87
Identity = 181/212 (85.38%), Postives = 196/212 (92.45%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLA+SVLKCGK KVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR++  AKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKID+HMY
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAAQSTQL-SKKSKK 212
           LA+GPG   P    AA P AQ+ ++ +KKSKK
Sbjct: 181 LAKGPGGDIP----AAAPPAQTAEVPAKKSKK 208

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BLAST of CmoCh08G004260.1 vs. ExPASy Swiss-Prot
Match: Q9LUQ6 (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.8e-87
Identity = 179/211 (84.83%), Postives = 188/211 (89.10%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLK+QKRLAASV+KCGKGKVWLDPNE  +ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR + EAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRR L KYRESKKID+HMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKASRERKFARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 212
           LAQGPG  +   T+ A    Q     KKSKK
Sbjct: 181 LAQGPGGGE--TTTPAGAPQQPEVTKKKSKK 209

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BLAST of CmoCh08G004260.1 vs. ExPASy Swiss-Prot
Match: P36241 (60S ribosomal protein L19 OS=Drosophila melanogaster OX=7227 GN=RpL19 PE=1 SV=2)

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-63
Identity = 129/182 (70.88%), Postives = 153/182 (84.07%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           M SLKLQKRLAASVL+CGK KVWLDPNE+NEI+  NSRQNIRKL+KDG +I+KP  +HSR
Sbjct: 1   MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
            R R+  EA+RKGRH G+GKRKGT  AR+PTK+LWM+R RVLRRLL+KYR+SKKID+H+Y
Sbjct: 61  YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K + +R+    RREER
Sbjct: 121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARK----RREER 178

Query: 181 LA 183
           +A
Sbjct: 181 IA 178

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BLAST of CmoCh08G004260.1 vs. ExPASy Swiss-Prot
Match: Q3T0W9 (60S ribosomal protein L19 OS=Bos taurus OX=9913 GN=RPL19 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 7.3e-62
Identity = 126/181 (69.61%), Postives = 151/181 (83.43%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           M  L+LQKRLA+SVL+CGK KVWLDPNE NEI+ ANSRQ IRKL+KDG +IRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 177

Query: 181 L 182
           L
Sbjct: 181 L 177

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BLAST of CmoCh08G004260.1 vs. ExPASy TrEMBL
Match: A0A6J1H702 (Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111460761 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.1e-104
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 212
           LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK
Sbjct: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 211

[Close]

BLAST of CmoCh08G004260.1 vs. ExPASy TrEMBL
Match: A0A6J1KV74 (Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111497884 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.8e-103
Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 212
           LAQGPGEKQPP TSAAQPAAQSTQ SKKSKK
Sbjct: 181 LAQGPGEKQPPATSAAQPAAQSTQQSKKSKK 211

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BLAST of CmoCh08G004260.1 vs. ExPASy TrEMBL
Match: A0A5A7VS85 (Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00750 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.1e-100
Identity = 205/213 (96.24%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTK+LWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAA--QSTQLSKKSKK 212
           LAQGPGEKQPPVTSAAQPAA  QSTQ SKKSKK
Sbjct: 181 LAQGPGEKQPPVTSAAQPAAVSQSTQASKKSKK 213

[Close]

BLAST of CmoCh08G004260.1 vs. ExPASy TrEMBL
Match: A0A1S3BSJ2 (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103492800 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.1e-100
Identity = 205/213 (96.24%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTK+LWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAA--QSTQLSKKSKK 212
           LAQGPGEKQPPVTSAAQPAA  QSTQ SKKSKK
Sbjct: 181 LAQGPGEKQPPVTSAAQPAAVSQSTQASKKSKK 213

[Close]

BLAST of CmoCh08G004260.1 vs. ExPASy TrEMBL
Match: A0A6J1DJQ5 (Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111021109 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.2e-97
Identity = 202/213 (94.84%), Postives = 204/213 (95.77%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNE NEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAA--QSTQLSKKSKK 212
           LAQGPGEKQ    SAAQPAA  QSTQ SKKSKK
Sbjct: 181 LAQGPGEKQSSAASAAQPAAGSQSTQASKKSKK 213

[Close]

BLAST of CmoCh08G004260.1 vs. NCBI nr
Match: XP_022959808.1 (60S ribosomal protein L19-1-like [Cucurbita moschata])

HSP 1 Score: 386.7 bits (992), Expect = 1.3e-103
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 212
           LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK
Sbjct: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 211

[Close]

BLAST of CmoCh08G004260.1 vs. NCBI nr
Match: XP_023004655.1 (60S ribosomal protein L19-1-like [Cucurbita maxima])

HSP 1 Score: 382.9 bits (982), Expect = 1.8e-102
Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 212
           LAQGPGEKQPP TSAAQPAAQSTQ SKKSKK
Sbjct: 181 LAQGPGEKQPPATSAAQPAAQSTQQSKKSKK 211

[Close]

BLAST of CmoCh08G004260.1 vs. NCBI nr
Match: XP_023514714.1 (60S ribosomal protein L19-1-like [Cucurbita pepo subsp. pepo] >KAG6593210.1 60S ribosomal protein L19-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030210.1 60S ribosomal protein L19-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 382.5 bits (981), Expect = 2.4e-102
Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 212
           LAQGPGEKQPP TSAAQPAAQSTQ SKKSKK
Sbjct: 181 LAQGPGEKQPPATSAAQPAAQSTQPSKKSKK 211

[Close]

BLAST of CmoCh08G004260.1 vs. NCBI nr
Match: XP_004136019.1 (60S ribosomal protein L19-1 [Cucumis sativus] >KAE8646346.1 hypothetical protein Csa_015693 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 1.0e-100
Identity = 207/213 (97.18%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAA--QSTQLSKKSKK 212
           LAQGPGEKQPPVTSAAQPAA  QSTQ SKKSKK
Sbjct: 181 LAQGPGEKQPPVTSAAQPAAASQSTQASKKSKK 213

[Close]

BLAST of CmoCh08G004260.1 vs. NCBI nr
Match: XP_038896810.1 (60S ribosomal protein L19-1-like [Benincasa hispida])

HSP 1 Score: 374.8 bits (961), Expect = 4.9e-100
Identity = 206/213 (96.71%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAA--QSTQLSKKSKK 212
           LAQGPGEKQPPVTSAAQPAA  QSTQ SKKSKK
Sbjct: 181 LAQGPGEKQPPVTSAAQPAAASQSTQASKKSKK 213

[Close]

BLAST of CmoCh08G004260.1 vs. TAIR 10
Match: AT1G02780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 329.7 bits (844), Expect = 1.7e-90
Identity = 183/214 (85.51%), Postives = 195/214 (91.12%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLAASV+KCGKGKVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR+MK AK KGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKIDKHMY
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQGPGEKQPPVTS---AAQPAAQSTQLSKKSKK 212
           LA+GPG    PV +   AA PA  +    KKSKK
Sbjct: 181 LAKGPGGDVAPVAAPAPAATPAPTAAVPKKKSKK 214

[Close]

BLAST of CmoCh08G004260.1 vs. TAIR 10
Match: AT4G02230.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 323.9 bits (829), Expect = 9.3e-89
Identity = 181/212 (85.38%), Postives = 196/212 (92.45%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLKLQKRLA+SVLKCGK KVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR++  AKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKID+HMY
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAAQSTQL-SKKSKK 212
           LA+GPG   P    AA P AQ+ ++ +KKSKK
Sbjct: 181 LAKGPGGDIP----AAAPPAQTAEVPAKKSKK 208

[Close]

BLAST of CmoCh08G004260.1 vs. TAIR 10
Match: AT3G16780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 322.4 bits (825), Expect = 2.7e-88
Identity = 179/211 (84.83%), Postives = 188/211 (89.10%), Query Frame = 0


Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSR 60
           MVSLK+QKRLAASV+KCGKGKVWLDPNE  +ISMANSRQNIRKLVKDGF+IRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR + EAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRR L KYRESKKID+HMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180
           HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKASRERKFARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 LAQGPGEKQPPVTSAAQPAAQSTQLSKKSKK 212
           LAQGPG  +   T+ A    Q     KKSKK
Sbjct: 181 LAQGPGGGE--TTTPAGAPQQPEVTKKKSKK 209

[Close]

BLAST of CmoCh08G004260.1 vs. TAIR 10
Match: AT4G16030.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-14
Identity = 65/133 (48.87%), Postives = 78/133 (58.65%), Query Frame = 0


Query: 58  HSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDK 117
           HSRSRAR      RK RH+GYG  K T EA         RR+++L+RLL+K+  +KKIDK
Sbjct: 7   HSRSRAR------RKCRHTGYG--KDTMEALRRIMKRLTRRLKMLKRLLKKFCWNKKIDK 66

Query: 118 HM-YHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFAR 177
            + YHDM+MKVKG V+KNK VLMES+HKS                       SRERKF+ 
Sbjct: 67  LVYYHDMFMKVKGKVYKNKCVLMESMHKS-----------------------SRERKFSG 108

Query: 178 REERLAQGP-GEK 189
            E RLA  P GEK
Sbjct: 127 SEMRLALEPEGEK 108

The following BLAST results are available for this feature:

BLAST of CmoCh08G004260.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRX2	2.4e-89	85.51	60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1	[more]
P49693	1.3e-87	85.38	60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3	[more]
Q9LUQ6	3.8e-87	84.83	60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1	[more]
P36241	1.7e-63	70.88	60S ribosomal protein L19 OS=Drosophila melanogaster OX=7227 GN=RpL19 PE=1 SV=2	[more]
Q3T0W9	7.3e-62	69.61	60S ribosomal protein L19 OS=Bos taurus OX=9913 GN=RPL19 PE=2 SV=1	[more]

BLAST of CmoCh08G004260.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H702	6.1e-104	100.00	Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111460761 PE=3 SV=1	[more]
A0A6J1KV74	8.8e-103	99.05	Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111497884 PE=3 SV=1	[more]
A0A5A7VS85	3.1e-100	96.24	Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold41...	[more]
A0A1S3BSJ2	3.1e-100	96.24	Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103492800 PE=3 SV=1	[more]
A0A6J1DJQ5	3.2e-97	94.84	Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111021109 PE=3 SV=1	[more]

BLAST of CmoCh08G004260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959808.1	1.3e-103	100.00	60S ribosomal protein L19-1-like [Cucurbita moschata]	[more]
XP_023004655.1	1.8e-102	99.05	60S ribosomal protein L19-1-like [Cucurbita maxima]	[more]
XP_023514714.1	2.4e-102	99.05	60S ribosomal protein L19-1-like [Cucurbita pepo subsp. pepo] >KAG6593210.1 60S ...	[more]
XP_004136019.1	1.0e-100	97.18	60S ribosomal protein L19-1 [Cucumis sativus] >KAE8646346.1 hypothetical protein...	[more]
XP_038896810.1	4.9e-100	96.71	60S ribosomal protein L19-1-like [Benincasa hispida]	[more]

BLAST of CmoCh08G004260.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02780.1	1.7e-90	85.51	Ribosomal protein L19e family protein	[more]
AT4G02230.1	9.3e-89	85.38	Ribosomal protein L19e family protein	[more]
AT3G16780.1	2.7e-88	84.83	Ribosomal protein L19e family protein	[more]
AT4G16030.1	3.4e-14	48.87	Ribosomal protein L19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 e-value: 3.1E-97 score: 339.0
IPR000196	Ribosomal protein L19/L19e	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 e-value: 1.5E-64 score: 216.4
IPR000196	Ribosomal protein L19/L19e	HAMAP	MF_01475	Ribosomal_L19e	coord: 3..149 score: 20.563551
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	1.10.1650.10		coord: 2..56 e-value: 1.1E-31 score: 110.4
None	No IPR available	GENE3D	1.10.1200.240		coord: 57..189 e-value: 1.1E-58 score: 199.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..85
None	No IPR available	PANTHER	PTHR10722:SF26	RIBOSOMAL PROTEIN L19	coord: 1..211
IPR039547	60S ribosomal protein L19	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..211
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26
IPR033935	Ribosomal protein L19, eukaryotic	CDD	cd01417	Ribosomal_L19e_E	coord: 4..167 e-value: 1.38143E-79 score: 233.396
IPR035970	Ribosomal protein L19/L19e superfamily	SUPERFAMILY	48140	Ribosomal protein L19 (L19e)	coord: 3..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G004260	CmoCh08G004260	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004260.1:exon:7809	CmoCh08G004260.1:exon:7809	exon
CmoCh08G004260.1:exon:7808	CmoCh08G004260.1:exon:7808	exon
CmoCh08G004260.1:exon:7807	CmoCh08G004260.1:exon:7807	exon
CmoCh08G004260.1:exon:7806	CmoCh08G004260.1:exon:7806	exon
CmoCh08G004260.1:exon:7805	CmoCh08G004260.1:exon:7805	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004260.1:three_prime_utr	CmoCh08G004260.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004260.1:cds	CmoCh08G004260.1:cds_5	CDS
CmoCh08G004260.1:cds	CmoCh08G004260.1:cds_4	CDS
CmoCh08G004260.1:cds	CmoCh08G004260.1:cds_3	CDS
CmoCh08G004260.1:cds	CmoCh08G004260.1:cds_2	CDS
CmoCh08G004260.1:cds	CmoCh08G004260.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004260.1:five_prime_utr	CmoCh08G004260.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004260.1	CmoCh08G004260.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0006508	proteolysis
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004252	serine-type endopeptidase activity