CmoCh08G001610.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G001610.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	Cmo_Chr08: 928722 .. 931464 (-)
Sequence length	2257
RNA-Seq Expression	CmoCh08G001610.1
Synteny	CmoCh08G001610.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGAGACTGTGACAGAGGGGTTTGAGCTTCTTCATCTCCGCCATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTCTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAGCTGCATTCTTTGCCTTCATCCATCCACTTTGACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGATTTTCACTGTTCTTGATCAGGAAGCTGCGATAACAGCAGAGGTAATCGAGGAAGACGGTGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGGAGTTGCGACATTGCAGAGTTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTAGTTTTATTTCCAAGTAATGCTTCATCGTCTGTTCTTTCGTTTTAGATTTCCAGAATGCTCTATTTGCTTCTATTTCTCTTTGGAACTTCCGTAAACAATTAGTTTAAGATCATGCTAATTGGAATCCGGAAAGCATTTTTTTTGAATTTTGATGCTTAACAAATTCAATGTACCCGAAGGTAATCATGATTCTTTAAAGGCAGGCCTTAATTCTCTTATCTGTCTGGAGTAACATTGAATGAGTTCAAGCAGTGATTATGTTTCTTTTCATGTTTTGAATGCCATTTTTTATTGATCTCTCTGTATTTTGGACCAGGTCTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGTTAGTGTCAAATCAATTATAAGTTGTCTTAATGTTAGCCCGTTCAGTATGATTGAATGATGAATTTTATTGTCTTGAAGGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAATAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTAGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTCTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGTAAAATTCTATATCTGAATCTCTTGGAATTTGAATTTTGCATTCCATTTTTGTTTATCTTTGACCCTTTTTCATTCTTTCATGTAGGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACGAGTCTTGACTGCAGCCCTTCTTCTTGAACAAGTAAAAGAAGAAATCTCATCTTGTTTAAATGTTCTTAATCAGTTACAAGTTTGATTTTTAGCTAAATTATTAGAAGGATCAAGTTACCTATCCTTGTGAGATCTGCATTGAGAATCTTACAAAGTTTTGCTTTGAGGGTATTAGAATCTTTGATAAGGAATACTCTAAACTGATCTTGATTTACTTAGCCTTTCTACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAGAACACCTGATTGGAAGAATGTTGTATCAGTAACTGTCATTAGCTAATGGGATTACGCTTGATGCTCTCGACCTATCATCGCTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGATATATAGGTCGATCACGGATTCAAGGTATAGCAAACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAAAACACCTGATTGGAAGAATGTTGTATCGGTGACTGTCATTAGCTAACGGGATTACGCTTAATGCTCTCGACCTATCATCACTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGGTATATAGGTCGATCACGGATTCAAGGTATAGCAAACAAGACAACTAGTCGATCCGTGACTGAGGTGCAAAGACAAAGGAATGTGGTGGGTATAAGGAGTATAACAAGCAAGAAAAGGAATGCAGGCGCTGGTAAGCGTAGAAGGGCTAGAAAGCGAAGTTAAGGTCGGTAGGCAAGCGGGTTTGGGAACGAATCCTGTTCACACGCAAACTCTTCCTGAGACTCGGTAGTTGACCTATGAGATTAAGCAAAGTTCTGATCTCGAACCTCCTTTTCCTTTACCATCATGTTCGTATGAGCAGTAGATGTATTAGATTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGGTGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTAC

mRNA sequence

ACTGAGACTGTGACAGAGGGGTTTGAGCTTCTTCATCTCCGCCATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTCTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAGCTGCATTCTTTGCCTTCATCCATCCACTTTGACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGATTTTCACTGTTCTTGATCAGGAAGCTGCGATAACAGCAGAGGTAATCGAGGAAGACGGTGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGGAGTTGCGACATTGCAGAGTTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTCTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAATAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTAGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTCTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACGAGTCTTGACTGCAGCCCTTCTTCTTGAACAAGTAAAAGAAGAAATCTCATCTTGTTTAAATGTTCTTAATCAGTTACAAGTTTGATTTTTAGCTAAATTATTAGAAGGATCAAGTTACCTATCCTTGTGAGATCTGCATTGAGAATCTTACAAAGTTTTGCTTTGAGGGTATTAGAATCTTTGATAAGGAATACTCTAAACTGATCTTGATTTACTTAGCCTTTCTACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAGAACACCTGATTGGAAGAATGTTGTATCAGTAACTGTCATTAGCTAATGGGATTACGCTTGATGCTCTCGACCTATCATCGCTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGATATATAGGTCGATCACGGATTCAAGGTATAGCAAACTGGGAAGCACATATCTAAGGGTTTGCTTTGACACAGCACTACTAAGGTTTTCAAGGTTATAGGAACTTAAAACACCTGATTGGAAGAATGTTGTATCGGTGACTGTCATTAGCTAACGGGATTACGCTTAATGCTCTCGACCTATCATCACTTCCTTCCTCTACTAGTTCTAGAGTCCAGTAGCATTTTACAACTTTGGTATATAGGTCGATCACGGATTCAAGGTATAGCAAACAAGACAACTAGTCGATCCGTGACTGAGGTGCAAAGACAAAGGAATGTGGTGGGTATAAGGAGTATAACAAGCAAGAAAAGGAATGCAGGCGCTGGTAAGCGTAGAAGGGCTAGAAAGCGAAGTTAAGGTCGGTAGGCAAGCGGGTTTGGGAACGAATCCTGTTCACACGCAAACTCTTCCTGAGACTCGGTAGTTGACCTATGAGATTAAGCAAAGTTCTGATCTCGAACCTCCTTTTCCTTTACCATCATGTTCGTATGAGCAGTAGATGTATTAGATTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGGTGATCAAGATTTACAATGACAATGTGTGATTCATTTATGTAAGTTTAGAAATTTTATTGATATAAGTTAATGTTTTCACCTGTCCAACTAGAGAGCTCAAATAGATCGAAAACAAAGGTTTCCTTAGGCAGATGATCAAGATTTAC

Coding sequence (CDS)

ATGGCGAACGCCGCTAGCTGCTTATCCTCCTCGTCGTTGTCTTCTTCCTCAAGGATCCTCGGGCAGAAATTTCATAATTGTTTTCCATTGAAACAGCTGCATTCTTTGCCTTCATCCATCCACTTTGACCACTGGAAACTCTCCCGCTTGGTTTTCGTTGCTCCTCCCATGCCATGTGTTTCTTCATCTTCTTCATGCTCTCCTCGTTTCTTGAGGCATAAACACGGGGCTAGATTTCCAGTGATTTTCACTGTTCTTGATCAGGAAGCTGCGATAACAGCAGAGGTAATCGAGGAAGACGGTGTTAAGAGCGAAGACAGCGTTTCGAATCAGGAAGTGAAAAATCTGGCACGGCCTTGTGAGCTCTACGTGTGTAATTTACCGAGGAGTTGCGACATTGCAGAGTTGGTTGAGATGTTTAAACCGTTTGGTACAGTCTTGGCTGCTGAGGTCTCTCGGAATCCAGAGACAGGCATAAGCAAGGGATGTGGCTATGTCACAATGGGTTCAATAAACTCCGCTAAAGTTTCAATTACGGCATTAGATTGTTCTGATGTTGGTGGACGAGAAATGCGCGTTAGATTTGCTGTTGATATGAATCCCAAAATGAGAAATCGCAATAACCTGCATTCATCACCCAGGAAGAACATAATTTATGAAAGTCCTTACAAAATCTATATTGGGAATCTTGCTTGGGATGTCAAACCTGAAGATCTGAGGAACCTTTTTAGCCAATTTGGAACTGTAGTCAGTGCAAAAATTTTGAATGATCGTAGAGCTGGGAAGAGTCGTCTTTACGGTTTTCTTTCTTTCTCTTCAGCTGCAGAGCGTGATGCAGCAATTTCTTTGAATGGAACAGAGTTCAAGAACAGGAAACTCATTGTTAAAGAGGGTTTGGAAAGGAACGAGTCTTGA

Protein sequence

MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLERNES

Homology

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.1e-26
Identity = 99/300 (33.00%), Postives = 149/300 (49.67%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMP-- 60
           MA++AS L   SL+  +           PL +  S  +S+ F         F  PP    
Sbjct: 1   MASSASSLHFLSLTPQT----------LPLPKPTSQTTSLSF---------FSLPPSSLN 60

Query: 61  -CVSSSSSC-SPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNL 120
             +SSSSSC S RF+R    + F  I  V D           +DGV+ E        +N 
Sbjct: 61  LSLSSSSSCFSSRFVRKVTLSDFDQIEDVED----------GDDGVEEE--------RNF 120

Query: 121 ARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKV 180
           +   +++V NLP S D A L E+F+  G V   EV  +  TG S+G G+VTM S    + 
Sbjct: 121 SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEA 180

Query: 181 SITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKP 240
           +    +  ++ GR +RV       P+ R  ++     R    ++S  ++Y+GNLAW V  
Sbjct: 181 ACQQFNGYELDGRALRVNSGPP--PEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 240

Query: 241 EDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAI-SLNGTEFKNRKLIV 296
           + L  LFS+ G VV AK++ DR +G+SR +GF+++SSA E + AI SL+G +   R + V
Sbjct: 241 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-25
Identity = 73/220 (33.18%), Postives = 120/220 (54.55%), Query Frame = 0


Query: 95  EVIEEDGVKSEDSVSNQEVKNLARPCE--LYVCNLPRSCDIAELVEMFKPFGTVLAAEVS 154
           E +EE+G + E+ V  ++    A   E  LYV NLP +   +EL ++F   GTV+  ++ 
Sbjct: 89  EEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIV 148

Query: 155 RNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFA--------VDMNPKMR 214
            +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F           M  K+R
Sbjct: 149 YDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIR 208

Query: 215 NRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSR 274
           + N  +         +SP+K+Y GNL W++  + L++ F     V+ AK++ +R  G+SR
Sbjct: 209 DNNRSY--------VDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSR 268

Query: 275 LYGFLSFSSAAERDAAI-SLNGTEFKNRKLIVKEGLERNE 304
            +GF+SF SA    +A+ ++NG E + R L +    ER +
Sbjct: 269 GFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.0e-25
Identity = 79/260 (30.38%), Postives = 127/260 (48.85%), Query Frame = 0


Query: 47  LSRLVFVAPPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSED 106
           +S   F++  +  +S SSS       +K   +FP   +VL ++        +E G     
Sbjct: 20  ISSYPFLSTQLKPISLSSSLPTLLSLNKRTTQFPTFVSVLSEDDNTLVLDDQEQGGDFPS 79

Query: 107 SV----SNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKG 166
            V      +E +  +   +L+V NLP   D   L ++F+  G V  AEV  N ET  S+G
Sbjct: 80  FVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRG 139

Query: 167 CGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESP 226
            G+VTM ++  A  ++      D+ GR + V  A     +         +PR    ++  
Sbjct: 140 FGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPER------APR---TFQPT 199

Query: 227 YKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAI- 286
           Y+IY+GN+ WD+    L  +FS+ G VVSA+++ DR +G+SR +GF++ SS AE   AI 
Sbjct: 200 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIA 259

Query: 287 SLNGTEFKNRKLIVKEGLER 302
           +L+G     R + V    ER
Sbjct: 260 NLDGQTLDGRTIRVNAAEER 270

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-24
Identity = 74/210 (35.24%), Postives = 121/210 (57.62%), Query Frame = 0


Query: 87  DQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPCELYVCNLPRSCDIAELVEMFKPFGTV 146
           ++E A++AE  EE+  + E+ V ++ V+       LYV NLP S   ++L E+F   GTV
Sbjct: 86  EEEVALSAEE-EEEIEEKEERVESESVEG----GRLYVGNLPFSMTSSQLSEIFAEAGTV 145

Query: 147 LAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRNR 206
              E+  +  T  S+G  +VTMGS+  AK +I   D S VGGR ++V F     P+   R
Sbjct: 146 ANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF--PEVPRGGER 205

Query: 207 NNLHSSPRKNI--IYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSR 266
             + +  R       +SP+K+Y+ NL+W +  + LR+ F+     +SAK++ DR +G+SR
Sbjct: 206 EVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSR 265

Query: 267 LYGFLSFSSAAERDAAI-SLNGTEFKNRKL 294
            +GF++FSSA   ++A+ ++N  E + R L
Sbjct: 266 GFGFITFSSAEAMNSALDTMNEVELEGRPL 288

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-23
Identity = 74/217 (34.10%), Postives = 113/217 (52.07%), Query Frame = 0


Query: 87  DQEAAITAEVIEEDGVKSEDSVSNQ-EVKNLARPCELYVCNLPRSCDIAELVEMFKPFGT 146
           D      +E  E +G  SE +VS + E    +   +L+V NL    +   L  +F+  GT
Sbjct: 116 DASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGT 175

Query: 147 VLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRN 206
           V  AEV  N ET  S+G G+VTM S++ A+ ++   +  D+ GR + V  A     +   
Sbjct: 176 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER 235

Query: 207 RNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRL 266
                 +PR   +YE  +++Y+GNL WDV    L  LFS+ G VV A+++ DR  G+SR 
Sbjct: 236 ------APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 295

Query: 267 YGFLSFSSAAERDAAIS-LNGTEFKNRKLIVKEGLER 302
           +GF++ S   E + AIS L+G   + R + V    ER
Sbjct: 296 FGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy TrEMBL
Match: A0A6J1H6A5 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111460593 PE=4 SV=1)

HSP 1 Score: 604.4 bits (1557), Expect = 2.7e-169
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60
           MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV
Sbjct: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60

Query: 61  SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC 120
           SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC
Sbjct: 61  SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC 120

Query: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180
           ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA
Sbjct: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180

Query: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240
           LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR
Sbjct: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240

Query: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300
           NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE
Sbjct: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300

Query: 301 RNES 305
           RNES
Sbjct: 301 RNES 304

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy TrEMBL
Match: A0A6J1KXD5 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497999 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 1.5e-164
Identity = 295/302 (97.68%), Postives = 298/302 (98.68%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60
           MANAASCLSSSSLS SSRILGQKFHNCFPLKQLHSLPSSIHF+HWKLSRLVFVAPPMPCV
Sbjct: 1   MANAASCLSSSSLSFSSRILGQKFHNCFPLKQLHSLPSSIHFNHWKLSRLVFVAPPMPCV 60

Query: 61  SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC 120
           SSSSSCSPRFLRHKHGARFPV+FTVLDQE A+TAEVIEED VKSEDSVSNQEVKNLARPC
Sbjct: 61  SSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLARPC 120

Query: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180
           ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPET ISKGCGYVTMGSINSAKVSITA
Sbjct: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSITA 180

Query: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240
           LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR
Sbjct: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240

Query: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300
           NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE
Sbjct: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300

Query: 301 RN 303
           RN
Sbjct: 301 RN 302

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy TrEMBL
Match: A0A6J1DRW5 (28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111023809 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 4.0e-125
Identity = 239/309 (77.35%), Postives = 264/309 (85.44%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSR-----ILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAP 60
           MANAA+CL+SSS SSSS      IL Q       LKQLHSLPSSIHF + KLSRLVFVAP
Sbjct: 1   MANAATCLTSSSSSSSSYSSSPWILQQNPRKHCTLKQLHSLPSSIHFRYSKLSRLVFVAP 60

Query: 61  PMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKN 120
           P+PC+S  SS     L H   ARF V+  +LD+E+A+T E IEED VKSE + SNQEVK 
Sbjct: 61  PLPCLSPVSSSPYCSLSHNRRARFSVLLAILDKESAVTEEAIEEDDVKSEGNASNQEVKK 120

Query: 121 LARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAK 180
            A+PCELYVCNLPR+CDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAK
Sbjct: 121 QAQPCELYVCNLPRNCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAK 180

Query: 181 VSITALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVK 240
           VSI ALD SDVGGREMRVRFAVDM+PK RN  NL+SSP+KNIIYESPYK+Y+GNLAWDVK
Sbjct: 181 VSIAALDGSDVGGREMRVRFAVDMSPKKRNIENLNSSPKKNIIYESPYKVYVGNLAWDVK 240

Query: 241 PEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIV 300
           P DLR+LFSQFGTVVSAK+LNDRRAGKSR+YGFLSFSSAAER+AAISL+GTEF NRKL+V
Sbjct: 241 PGDLRSLFSQFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAEREAAISLDGTEFNNRKLLV 300

Query: 301 KEGLERNES 305
           +EGLERNES
Sbjct: 301 REGLERNES 309

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy TrEMBL
Match: A0A1S3CB56 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498833 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.9e-115
Identity = 227/305 (74.43%), Postives = 248/305 (81.31%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSR-ILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPC 60
           MAN A+ L+ SS SS S  IL  K  N    KQLHS PSS HFD+ KL            
Sbjct: 1   MANLATSLTFSSSSSPSLWILKHKSPNYCTFKQLHSFPSSFHFDYTKL------------ 60

Query: 61  VSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARP 120
           VS         LRH HG RFPV+FTVLD E+A+T E I E  VKSE SVSNQEVK LARP
Sbjct: 61  VS---------LRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARP 120

Query: 121 CELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIT 180
           CELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI 
Sbjct: 121 CELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIA 180

Query: 181 ALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDL 240
           ALD SDVGGREMRVRFAVDMNPK RN NNL+SSP+KNIIYESPYK+Y+GNL+WDV+P DL
Sbjct: 181 ALDGSDVGGREMRVRFAVDMNPKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDL 240

Query: 241 RNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGL 300
           RNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTEF  RKL+V+EG 
Sbjct: 241 RNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGF 284

Query: 301 ERNES 305
           ER+ES
Sbjct: 301 ERSES 284

[Close]

BLAST of CmoCh08G001610.1 vs. ExPASy TrEMBL
Match: A0A5D3DM74 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002470 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.9e-115
Identity = 227/305 (74.43%), Postives = 248/305 (81.31%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSR-ILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPC 60
           MAN A+ L+ SS SS S  IL  K  N    KQLHS PSS HFD+ KL            
Sbjct: 1   MANLATSLTFSSSSSPSLWILKHKSPNYCTFKQLHSFPSSFHFDYTKL------------ 60

Query: 61  VSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARP 120
           VS         LRH HG RFPV+FTVLD E+A+T E I E  VKSE SVSNQEVK LARP
Sbjct: 61  VS---------LRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARP 120

Query: 121 CELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIT 180
           CELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI 
Sbjct: 121 CELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIA 180

Query: 181 ALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDL 240
           ALD SDVGGREMRVRFAVDMNPK RN NNL+SSP+KNIIYESPYK+Y+GNL+WDV+P DL
Sbjct: 181 ALDGSDVGGREMRVRFAVDMNPKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDL 240

Query: 241 RNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGL 300
           RNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTEF  RKL+V+EG 
Sbjct: 241 RNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGF 284

Query: 301 ERNES 305
           ER+ES
Sbjct: 301 ERSES 284

[Close]

BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: XP_022959557.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022959558.1 28 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 604.4 bits (1557), Expect = 5.5e-169
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60
           MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV
Sbjct: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60

Query: 61  SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC 120
           SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC
Sbjct: 61  SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC 120

Query: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180
           ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA
Sbjct: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180

Query: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240
           LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR
Sbjct: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240

Query: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300
           NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE
Sbjct: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300

Query: 301 RNES 305
           RNES
Sbjct: 301 RNES 304

[Close]

BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: KAG7025359.1 (hypothetical protein SDJN02_11854 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 596.7 bits (1537), Expect = 1.2e-166
Identity = 299/304 (98.36%), Postives = 301/304 (99.01%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60
           MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAP MPCV
Sbjct: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPSMPCV 60

Query: 61  SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC 120
           SSSSSCSPRFLRH HGARFPV+FTVLDQEAA+TAEVIEEDGVKSEDSVSNQEVKNLARPC
Sbjct: 61  SSSSSCSPRFLRHNHGARFPVLFTVLDQEAAVTAEVIEEDGVKSEDSVSNQEVKNLARPC 120

Query: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180
           ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA
Sbjct: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180

Query: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240
           LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR
Sbjct: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240

Query: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300
           NLF QFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE
Sbjct: 241 NLFGQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300

Query: 301 RNES 305
           RNES
Sbjct: 301 RNES 304

[Close]

BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: XP_023513571.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023513572.1 28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 591.7 bits (1524), Expect = 3.7e-165
Identity = 296/304 (97.37%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60
           MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV
Sbjct: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60

Query: 61  SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC 120
           SSSSSCSPRF RH H ARFPV+FTVLDQEAA+T EVIEEDGVKSEDSVSNQEVKN ARPC
Sbjct: 61  SSSSSCSPRFFRHNHEARFPVLFTVLDQEAAVTGEVIEEDGVKSEDSVSNQEVKNQARPC 120

Query: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180
           ELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA
Sbjct: 121 ELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180

Query: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240
           LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR
Sbjct: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240

Query: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300
           NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE
Sbjct: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300

Query: 301 RNES 305
           RNES
Sbjct: 301 RNES 304

[Close]

BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: XP_023004809.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 588.6 bits (1516), Expect = 3.1e-164
Identity = 295/302 (97.68%), Postives = 298/302 (98.68%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60
           MANAASCLSSSSLS SSRILGQKFHNCFPLKQLHSLPSSIHF+HWKLSRLVFVAPPMPCV
Sbjct: 1   MANAASCLSSSSLSFSSRILGQKFHNCFPLKQLHSLPSSIHFNHWKLSRLVFVAPPMPCV 60

Query: 61  SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC 120
           SSSSSCSPRFLRHKHGARFPV+FTVLDQE A+TAEVIEED VKSEDSVSNQEVKNLARPC
Sbjct: 61  SSSSSCSPRFLRHKHGARFPVLFTVLDQEDAVTAEVIEEDNVKSEDSVSNQEVKNLARPC 120

Query: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180
           ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPET ISKGCGYVTMGSINSAKVSITA
Sbjct: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETSISKGCGYVTMGSINSAKVSITA 180

Query: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240
           LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR
Sbjct: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240

Query: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300
           NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE
Sbjct: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300

Query: 301 RN 303
           RN
Sbjct: 301 RN 302

[Close]

BLAST of CmoCh08G001610.1 vs. NCBI nr
Match: KAG6592950.1 (hypothetical protein SDJN03_12426, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 587.0 bits (1512), Expect = 9.1e-164
Identity = 294/301 (97.67%), Postives = 296/301 (98.34%), Query Frame = 0


Query: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCV 60
           MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAP MPCV
Sbjct: 1   MANAASCLSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPSMPCV 60

Query: 61  SSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARPC 120
           SSSSSCSPRFLRH HGARFPV+FTVLDQEAA+TAEVIEEDGVKSEDSVSNQEVKNLARPC
Sbjct: 61  SSSSSCSPRFLRHNHGARFPVLFTVLDQEAAVTAEVIEEDGVKSEDSVSNQEVKNLARPC 120

Query: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180
           ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA
Sbjct: 121 ELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 180

Query: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240
           LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR
Sbjct: 181 LDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLR 240

Query: 241 NLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGLE 300
           NLF QFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEG  
Sbjct: 241 NLFGQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGRS 300

Query: 301 R 302
           R
Sbjct: 301 R 301

[Close]

BLAST of CmoCh08G001610.1 vs. TAIR 10
Match: AT1G01080.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-71
Identity = 157/312 (50.32%), Postives = 213/312 (68.27%), Query Frame = 0


Query: 4   AASC----LSSSSLSSSSRILGQK-FHNCFPLKQLHSL----PSSIHFDHWKLSRLVFVA 63
           AASC    LSSSS SS + I   K   +      L SL     SS  F H  LSR  FVA
Sbjct: 2   AASCFAIPLSSSSRSSHNAIPKYKTLISSSSYSYLESLKLQFSSSNSFHHSSLSR-PFVA 61

Query: 64  PPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDS-VSNQEV 123
            P+    SSS  S                 VLD+E     EV++ +   ++DS VS  E 
Sbjct: 62  QPLQIKVSSSELS-----------------VLDEEK--EEEVVKGEAEPNKDSVVSKAEP 121

Query: 124 KNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINS 183
               RPCELYVCN+PRS DIA+L++MF+PFGTV++ EVSRNP+TG S+G GYVTMGSINS
Sbjct: 122 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINS 181

Query: 184 AKVSITALDCSDVGGREMRVRFAVDMNP-KMRNRNNLHSSPRKNIIYESPYKIYIGNLAW 243
           AK++I +LD ++VGGREMRVR++VDMNP   RN   L+S+P+K ++YES +K+Y+GNL W
Sbjct: 182 AKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPW 241

Query: 244 DVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRK 303
             +P+ LRN FS+FGT+VS ++L+DR+ G++R++ FLSF+S  ERDAA+S NGT+++ R+
Sbjct: 242 FTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRR 293

Query: 304 LIVKEGLERNES 305
           +IV+EG+E++ES
Sbjct: 302 IIVREGIEKSES 293

[Close]

BLAST of CmoCh08G001610.1 vs. TAIR 10
Match: AT1G01080.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-70
Identity = 157/313 (50.16%), Postives = 213/313 (68.05%), Query Frame = 0


Query: 4   AASC----LSSSSLSSSSRILGQK-FHNCFPLKQLHSL----PSSIHFDHWKLSRLVFVA 63
           AASC    LSSSS SS + I   K   +      L SL     SS  F H  LSR  FVA
Sbjct: 2   AASCFAIPLSSSSRSSHNAIPKYKTLISSSSYSYLESLKLQFSSSNSFHHSSLSR-PFVA 61

Query: 64  PPMPCVSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDS-VSNQEV 123
            P+    SSS  S                 VLD+E     EV++ +   ++DS VS  E 
Sbjct: 62  QPLQIKVSSSELS-----------------VLDEEK--EEEVVKGEAEPNKDSVVSKAEP 121

Query: 124 KNLARPCELYVCNLPRSCDIAELVEMFKPFGTVLAAE-VSRNPETGISKGCGYVTMGSIN 183
               RPCELYVCN+PRS DIA+L++MF+PFGTV++ E VSRNP+TG S+G GYVTMGSIN
Sbjct: 122 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSIN 181

Query: 184 SAKVSITALDCSDVGGREMRVRFAVDMNP-KMRNRNNLHSSPRKNIIYESPYKIYIGNLA 243
           SAK++I +LD ++VGGREMRVR++VDMNP   RN   L+S+P+K ++YES +K+Y+GNL 
Sbjct: 182 SAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLP 241

Query: 244 WDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNR 303
           W  +P+ LRN FS+FGT+VS ++L+DR+ G++R++ FLSF+S  ERDAA+S NGT+++ R
Sbjct: 242 WFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGR 294

Query: 304 KLIVKEGLERNES 305
           ++IV+EG+E++ES
Sbjct: 302 RIIVREGIEKSES 294

[Close]

BLAST of CmoCh08G001610.1 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-26
Identity = 73/220 (33.18%), Postives = 120/220 (54.55%), Query Frame = 0


Query: 95  EVIEEDGVKSEDSVSNQEVKNLARPCE--LYVCNLPRSCDIAELVEMFKPFGTVLAAEVS 154
           E +EE+G + E+ V  ++    A   E  LYV NLP +   +EL ++F   GTV+  ++ 
Sbjct: 89  EEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIV 148

Query: 155 RNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFA--------VDMNPKMR 214
            +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F           M  K+R
Sbjct: 149 YDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIR 208

Query: 215 NRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSR 274
           + N  +         +SP+K+Y GNL W++  + L++ F     V+ AK++ +R  G+SR
Sbjct: 209 DNNRSY--------VDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSR 268

Query: 275 LYGFLSFSSAAERDAAI-SLNGTEFKNRKLIVKEGLERNE 304
            +GF+SF SA    +A+ ++NG E + R L +    ER +
Sbjct: 269 GFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300

[Close]

BLAST of CmoCh08G001610.1 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-24
Identity = 74/217 (34.10%), Postives = 113/217 (52.07%), Query Frame = 0


Query: 87  DQEAAITAEVIEEDGVKSEDSVSNQ-EVKNLARPCELYVCNLPRSCDIAELVEMFKPFGT 146
           D      +E  E +G  SE +VS + E    +   +L+V NL    +   L  +F+  GT
Sbjct: 116 DASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGT 175

Query: 147 VLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDCSDVGGREMRVRFAVDMNPKMRN 206
           V  AEV  N ET  S+G G+VTM S++ A+ ++   +  D+ GR + V  A     +   
Sbjct: 176 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER 235

Query: 207 RNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDLRNLFSQFGTVVSAKILNDRRAGKSRL 266
                 +PR   +YE  +++Y+GNL WDV    L  LFS+ G VV A+++ DR  G+SR 
Sbjct: 236 ------APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 295

Query: 267 YGFLSFSSAAERDAAIS-LNGTEFKNRKLIVKEGLER 302
           +GF++ S   E + AIS L+G   + R + V    ER
Sbjct: 296 FGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

[Close]

BLAST of CmoCh08G001610.1 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-24
Identity = 90/304 (29.61%), Postives = 148/304 (48.68%), Query Frame = 0


Query: 8   LSSSSLSSSSRILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPCVSSSSSCS 67
           ++SS L+ S ++L     +      L  +PS  +    +  R  F     P V+ + S  
Sbjct: 1   MTSSVLTPSLKLLAMTNSSS---STLFCIPSIFNISSSESHRFNFSLSSRP-VNLTLSLK 60

Query: 68  PRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDG------VKSEDSVSNQEVKNLARPCE 127
            + LR+      PV+ T + Q +    E   EDG      V  ++S  +++      P E
Sbjct: 61  SKTLRNSS----PVV-TFVSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPE 120

Query: 128 ---LYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI 187
              L+V NLP   D   L  +F+  GTV  +EV  N +T  S+G G+VTM ++  A+ ++
Sbjct: 121 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 180

Query: 188 TALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPED 247
              +  +V GR + V  A     +   +      PR   +Y++ ++IY+GNL WDV    
Sbjct: 181 EKFNSFEVNGRRLTVNRAAPRGSRPERQ------PR---VYDAAFRIYVGNLPWDVDSGR 240

Query: 248 LRNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAI-SLNGTEFKNRKLIVKE 302
           L  LFS+ G VV A++++DR  G+SR +GF+  S+  E + AI +L+G   + R + V  
Sbjct: 241 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNV 286

The following BLAST results are available for this feature:

BLAST of CmoCh08G001610.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	7.1e-26	33.00	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q39061	4.6e-25	33.18	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19682	6.0e-25	30.38	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19684	1.7e-24	35.24	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q04836	1.5e-23	34.10	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]

BLAST of CmoCh08G001610.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6A5	2.7e-169	100.00	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KXD5	1.5e-164	97.68	29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1DRW5	4.0e-125	77.35	28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A1S3CB56	2.9e-115	74.43	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498833 ...	[more]
A0A5D3DM74	2.9e-115	74.43	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of CmoCh08G001610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959557.1	5.5e-169	100.00	28 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022959558.1 28 ...	[more]
KAG7025359.1	1.2e-166	98.36	hypothetical protein SDJN02_11854 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023513571.1	3.7e-165	97.37	28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo] >XP_0235135...	[more]
XP_023004809.1	3.1e-164	97.68	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima]	[more]
KAG6592950.1	9.1e-164	97.67	hypothetical protein SDJN03_12426, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh08G001610.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01080.1	1.1e-71	50.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G01080.2	2.8e-70	50.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	3.3e-26	33.18	chloroplast RNA-binding protein 33	[more]
AT4G24770.1	1.0e-24	34.10	31-kDa RNA binding protein	[more]
AT5G50250.1	2.3e-24	29.61	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 121..194 e-value: 1.0E-17 score: 74.9 coord: 224..296 e-value: 2.2E-22 score: 90.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 122..191 e-value: 2.4E-12 score: 46.5 coord: 225..293 e-value: 2.2E-18 score: 65.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 120..198 score: 14.265875
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 223..300 score: 17.659899
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 206..304 e-value: 2.5E-23 score: 84.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 87..205 e-value: 2.1E-21 score: 78.4
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 62..303
None	No IPR available	PANTHER	PTHR48025:SF7	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 62..303
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 119..214
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 216..302

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G001610	CmoCh08G001610	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G001610.1:exon:5990	CmoCh08G001610.1:exon:5990	exon
CmoCh08G001610.1:exon:5989	CmoCh08G001610.1:exon:5989	exon
CmoCh08G001610.1:exon:5988	CmoCh08G001610.1:exon:5988	exon
CmoCh08G001610.1:exon:5987	CmoCh08G001610.1:exon:5987	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G001610.1:three_prime_utr	CmoCh08G001610.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G001610.1:cds	CmoCh08G001610.1:cds_4	CDS
CmoCh08G001610.1:cds	CmoCh08G001610.1:cds_3	CDS
CmoCh08G001610.1:cds	CmoCh08G001610.1:cds_2	CDS
CmoCh08G001610.1:cds	CmoCh08G001610.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G001610.1:five_prime_utr	CmoCh08G001610.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G001610.1	CmoCh08G001610.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding