CmoCh06G007470.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G007470.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase
Location	Cmo_Chr06: 3884619 .. 3885663 (-)
Sequence length	309
RNA-Seq Expression	CmoCh06G007470.1
Synteny	CmoCh06G007470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAAGGAGCAACCAAAGAAGACGTTGAACAGTTGTCGAAATTTAAATTCAGAAAGCTCGACGATGCCGAGAAATTCTCTGCTGATTTACACGAACCTCTCGGTGGTATAATGACCGAGTGTGGTACAGATTTACCCATTGAACACACCCTCTCACAGGAGGATGCGGTATGTATCACATCCATTATCATATATCGAACCTTCGCTGGGATCTTACTTTGTTATAAACTAGAATTCGCTTGTTCTGTTCTCAAACTGACGACATTTCCTGCCTTTTAGGAGTGCTGTATCTGCCTTTCTGCATATGATGATGGCGTCGAGCTACGAGAGCTCCCATGTGGTCACCATTTCCACTGTTCCTGCGTCGATAAGTGGCCGTATATTAACGCTACATGTCCTCTCTGCAAGTATAACATCTTTTAAAATAGTAATCTTGCTGAAGAGGAAGTTTAAAAATACTCCTCGTTGCGAGTGTACGAACGTTAATACGTGTTGTTGAGTTATGTTTATGTTAGCCGTGAAAGAGCCTTTGGCTGCAGTTGTTAGTGTTGTGATCGTTGTGTATATTATTCTTTGCTGTAGTTGTTGCTCTGCTCAGGTTGCTTGTGTAAATGGCGATGTGAAGGTCCTGACTATTGCTCAACGCATTCCTTTGTTATTCTTCTCCTTTTCCTTAGTCCTCTCATCTTTTGTAATCTCATTACCAGTAAATTTAAGTTGCAAATCCTTTGCTTTGTACGCACTCTTCGAGATATGAATGAGATATGAACGAGGCTCGGGGCATTGTCTCTCGTTTTGGAGGCTCTCCCTCGGGAATGAAACTAGTGCTTGGGGAGGGGATGTAAAAGGGCACATAAGGCACTTCCGTTAACAAGCTTAACTACAACAAATTGCTAGTTTAGCTGCTCTTGTATGGTAGTACTGACTCTTAGAAAGATAGATTCCCCGATCTGAAATTAGAATATGAACGGAAAAGAATAAGAAACTTTTCGGACTTTATTGCATTCCTTTTTTATTCTCCTTATTTTTTAGTCCCGTCTAA

mRNA sequence

ATGCAGGAAGGAGCAACCAAAGAAGACGTTGAACAGTTGTCGAAATTTAAATTCAGAAAGCTCGACGATGCCGAGAAATTCTCTGCTGATTTACACGAACCTCTCGGTGGTATAATGACCGAGTGTGGTACAGATTTACCCATTGAACACACCCTCTCACAGGAGGATGCGGAGTGCTGTATCTGCCTTTCTGCATATGATGATGGCGTCGAGCTACGAGAGCTCCCATGTGGTCACCATTTCCACTGTTCCTGCGTCGATAAGTGGCCGTATATTAACGCTACATGTCCTCTCTGCAATCCCGTCTAA

Coding sequence (CDS)

ATGCAGGAAGGAGCAACCAAAGAAGACGTTGAACAGTTGTCGAAATTTAAATTCAGAAAGCTCGACGATGCCGAGAAATTCTCTGCTGATTTACACGAACCTCTCGGTGGTATAATGACCGAGTGTGGTACAGATTTACCCATTGAACACACCCTCTCACAGGAGGATGCGGAGTGCTGTATCTGCCTTTCTGCATATGATGATGGCGTCGAGCTACGAGAGCTCCCATGTGGTCACCATTTCCACTGTTCCTGCGTCGATAAGTGGCCGTATATTAACGCTACATGTCCTCTCTGCAATCCCGTCTAA

Protein sequence

MQEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLCNPV

Homology

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy Swiss-Prot
Match: Q9LN71 (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.1e-42
Identity = 79/99 (79.80%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSAD-LHEPLGGIMTECGTDLPIEHTLSQEDAECC 61
           QEGA+KED+EQL+KFKFRKL DA K + D       GIMTECGTD PIEHTL QEDAECC
Sbjct: 295 QEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECC 354

Query: 62  ICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           ICLSAY+DG ELRELPCGHHFHCSCVDKW YINATCPLC
Sbjct: 355 ICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLC 393

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy Swiss-Prot
Match: Q8LDB8 (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 3.2e-39
Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHE---PLGGIMTECGTDLPIEHTLSQEDAE 61
           QEGA+KED++QL+KFKFRK+ D  K + D  +     GG+MTECGTD P+EH L  EDAE
Sbjct: 265 QEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAE 324

Query: 62  CCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CCICLSAY+D  ELRELPCGHHFHC CVDKW YINATCPLC
Sbjct: 325 CCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLC 365

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy Swiss-Prot
Match: Q93Z92 (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.0e-34
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI 61
           QEGA+K D++Q+ KF+F K  + EK S        GIMTECGTD PIE +LS EDAECCI
Sbjct: 285 QEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIMTECGTDSPIERSLSPEDAECCI 344

Query: 62  CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CL  Y+DGVELRELPC HHFHC+C+DKW +IN+ CPLC
Sbjct: 345 CLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLC 378

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy Swiss-Prot
Match: Q8GUU2 (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-17
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 3   EGATKEDVEQLSKFKFRKLDDAEKFSAD----LHEPLGGIMTECGTDLPIEHTLSQEDAE 62
           EG ++ ++  L  +KF+     EK        +  P+ G+       L  E TL  EDA+
Sbjct: 253 EGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPINGLC------LATERTLLAEDAD 312

Query: 63  CCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CCICLS+Y+DG EL  LPC HHFH +C+ KW  + ATCPLC
Sbjct: 313 CCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLC 347

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-10
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 49  EHTLSQEDAECCICLSAYDDGVELREL-PCGHHFHCSCVDKWPYINATCPLC 100
           E    +E+ ECCICL  +++G +++ L PC H +HC CVD+W    ++CPLC
Sbjct: 97  ERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLC 148

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy TrEMBL
Match: A0A6J1FX35 (E3 ubiquitin-protein ligase At1g12760-like OS=Cucurbita moschata OX=3662 GN=LOC111447781 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.8e-53
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI 61
           QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI
Sbjct: 271 QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI 330

Query: 62  CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
Sbjct: 331 CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 368

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy TrEMBL
Match: A0A6J1KXF1 (E3 ubiquitin-protein ligase At1g12760-like OS=Cucurbita maxima OX=3661 GN=LOC111498428 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI 61
           QEGATKEDVEQLSKFKFRK+DDAEKFSADLH+PLGGIMTECGTD PIEH LSQEDAECCI
Sbjct: 271 QEGATKEDVEQLSKFKFRKVDDAEKFSADLHQPLGGIMTECGTDSPIEHALSQEDAECCI 330

Query: 62  CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CLSAYDDGVELRELPCGHHFHCSCVDKW YINATCPLC
Sbjct: 331 CLSAYDDGVELRELPCGHHFHCSCVDKWLYINATCPLC 368

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy TrEMBL
Match: A0A6J1DFX2 (E3 ubiquitin-protein ligase At1g12760-like OS=Momordica charantia OX=3673 GN=LOC111020442 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.4e-47
Identity = 88/98 (89.80%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI 61
           QEGATKEDVEQLSKFKFRK+DDAEKFS D+  PLGGIMTECGTD PIE  LSQEDAECCI
Sbjct: 271 QEGATKEDVEQLSKFKFRKVDDAEKFSTDVQGPLGGIMTECGTDSPIERALSQEDAECCI 330

Query: 62  CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CLSAYDDGVELRELPCGHHFHC+CVDKW YINATCPLC
Sbjct: 331 CLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 368

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy TrEMBL
Match: A0A6J1HJD3 (E3 ubiquitin-protein ligase At1g12760-like OS=Cucurbita maxima OX=3661 GN=LOC111465048 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.8e-46
Identity = 87/98 (88.78%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI 61
           QEGATKEDVEQLSKF FRK+DDAEKFSAD+ EPLGGIMTEC TD PIE  LSQEDAECCI
Sbjct: 271 QEGATKEDVEQLSKFTFRKVDDAEKFSADVQEPLGGIMTECSTDSPIERALSQEDAECCI 330

Query: 62  CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CLSAY+DGVELRELPCGHHFHC+CVDKW YINATCPLC
Sbjct: 331 CLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLC 368

[Close]

BLAST of CmoCh06G007470.1 vs. ExPASy TrEMBL
Match: A0A6J1E9J9 (E3 ubiquitin-protein ligase At1g12760-like OS=Cucurbita moschata OX=3662 GN=LOC111431108 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.4e-45
Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI 61
           QEGATKEDVEQLSKF FRK+DDAEKFSAD+ EPLGGIM EC TD PIE  LSQEDAECCI
Sbjct: 271 QEGATKEDVEQLSKFTFRKVDDAEKFSADVQEPLGGIMIECSTDSPIERALSQEDAECCI 330

Query: 62  CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CLSAY+DGVELRELPCGHHFHC+CVDKW YINATCPLC
Sbjct: 331 CLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLC 368

[Close]

BLAST of CmoCh06G007470.1 vs. TAIR 10
Match: AT1G12760.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.2e-43
Identity = 79/99 (79.80%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSAD-LHEPLGGIMTECGTDLPIEHTLSQEDAECC 61
           QEGA+KED+EQL+KFKFRKL DA K + D       GIMTECGTD PIEHTL QEDAECC
Sbjct: 295 QEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECC 354

Query: 62  ICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           ICLSAY+DG ELRELPCGHHFHCSCVDKW YINATCPLC
Sbjct: 355 ICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLC 393

[Close]

BLAST of CmoCh06G007470.1 vs. TAIR 10
Match: AT1G12760.2 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.2e-43
Identity = 79/99 (79.80%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSAD-LHEPLGGIMTECGTDLPIEHTLSQEDAECC 61
           QEGA+KED+EQL+KFKFRKL DA K + D       GIMTECGTD PIEHTL QEDAECC
Sbjct: 224 QEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECC 283

Query: 62  ICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           ICLSAY+DG ELRELPCGHHFHCSCVDKW YINATCPLC
Sbjct: 284 ICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLC 322

[Close]

BLAST of CmoCh06G007470.1 vs. TAIR 10
Match: AT1G63170.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-40
Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHE---PLGGIMTECGTDLPIEHTLSQEDAE 61
           QEGA+KED++QL+KFKFRK+ D  K + D  +     GG+MTECGTD P+EH L  EDAE
Sbjct: 265 QEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAE 324

Query: 62  CCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CCICLSAY+D  ELRELPCGHHFHC CVDKW YINATCPLC
Sbjct: 325 CCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLC 365

[Close]

BLAST of CmoCh06G007470.1 vs. TAIR 10
Match: AT4G11680.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-35
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI 61
           QEGA+K D++Q+ KF+F K  + EK S        GIMTECGTD PIE +LS EDAECCI
Sbjct: 285 QEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIMTECGTDSPIERSLSPEDAECCI 344

Query: 62  CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CL  Y+DGVELRELPC HHFHC+C+DKW +IN+ CPLC
Sbjct: 345 CLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLC 378

[Close]

BLAST of CmoCh06G007470.1 vs. TAIR 10
Match: AT3G61180.1 (RING/U-box superfamily protein )

HSP 1 Score: 127.9 bits (320), Expect = 4.7e-30
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 2   QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCI 61
           QEGA  E++E+L KFKF  + ++EK + ++ E  GGIMT   T+   E  L  EDAEC I
Sbjct: 266 QEGAPDEEIERLLKFKFLTVKNSEKVNGEIRETQGGIMTGLDTESQTERMLLSEDAECSI 325

Query: 62  CLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC 100
           CL AY+DGVELRELPC HHFH  CVDKW  INATCPLC
Sbjct: 326 CLCAYEDGVELRELPCRHHFHSLCVDKWLRINATCPLC 363

The following BLAST results are available for this feature:

BLAST of CmoCh06G007470.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN71	3.1e-42	79.80	E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g127...	[more]
Q8LDB8	3.2e-39	70.30	E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g631...	[more]
Q93Z92	4.0e-34	64.29	E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g116...	[more]
Q8GUU2	4.5e-17	42.57	E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV...	[more]
Q9SRM0	5.3e-10	44.23	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]

BLAST of CmoCh06G007470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FX35	1.8e-53	100.00	E3 ubiquitin-protein ligase At1g12760-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KXF1	2.4e-50	94.90	E3 ubiquitin-protein ligase At1g12760-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1DFX2	7.4e-47	89.80	E3 ubiquitin-protein ligase At1g12760-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1HJD3	2.8e-46	88.78	E3 ubiquitin-protein ligase At1g12760-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1E9J9	1.4e-45	87.76	E3 ubiquitin-protein ligase At1g12760-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of CmoCh06G007470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12760.1	2.2e-43	79.80	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT1G12760.2	2.2e-43	79.80	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT1G63170.1	2.3e-40	70.30	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT4G11680.1	2.9e-35	64.29	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT3G61180.1	4.7e-30	60.20	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 1.3E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 58..100 e-value: 5.5E-12 score: 45.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.25323
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 44..102 e-value: 2.0E-16 score: 61.0
None	No IPR available	PANTHER	PTHR45977	TARGET OF ERK KINASE MPK-1	coord: 2..100
None	No IPR available	PANTHER	PTHR45977:SF31	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 2..100
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 49..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G007470	CmoCh06G007470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G007470.1:exon:5019	CmoCh06G007470.1:exon:5019	exon
CmoCh06G007470.1:exon:5018	CmoCh06G007470.1:exon:5018	exon
CmoCh06G007470.1:exon:5017	CmoCh06G007470.1:exon:5017	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G007470.1:cds	CmoCh06G007470.1:cds_3	CDS
CmoCh06G007470.1:cds	CmoCh06G007470.1:cds_2	CDS
CmoCh06G007470.1:cds	CmoCh06G007470.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G007470.1	CmoCh06G007470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane