CmoCh05G014220.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G014220.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 10909550 .. 10910907 (-)
Sequence length348
RNA-Seq ExpressionCmoCh05G014220.1
SyntenyCmoCh05G014220.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTAGAAGACCCAAATGAGTGGGTGGCGACTGTTGGAAGGCCGAAATTGGTAGAGGCAGCAAAGCAAGGCCGTTTGGGAAAAGCGGAAGCCCAGAGCGGGGGAATGGGTGGCTTGTCAATTTATCAAACAGGTAAACTGCAACACCCAAAACTCTATTCTATTCTATTCTATGTTTCATACAAAATCAAATTCTGTCTCGAACCTCAATCATTGAAAAGGCTTACCAGCTCACGTTAGCAGAGGCCACAAGCGGAACAGTGCCTCGAGCTTTTAAAAAAATGGAAAACCCTGCCACTGCGCTCTGCGCTCTGCGCTCTGCCCTCTGCCCTCTCTGTCCTCTGTGGCTGTGTCTGGTGAACGGTGATGGTGGCAGAGCGGGGTGTGAGGTGAACCCCACCTACGTTGTCACGAGCCCACTCTCACCACCTACCACTCACCACCACTAAATAAACAAATAAATAAAACTCCCCTGTTCCGACGCTTCTACAGTTCGGAAATCGCCTCTGTAGAACGACGGGGATAGCCCTTCCATGGAAACTGGGGTCCTGTTTCTTTTCTTTTTCTCAAGTTGGGGGTGTGCGTGGTTTCTTAGGTTTGGTTTCTTTGTTAATTCCTGAGTAACAAAGGAGTTGTTAGGCATGCATTATAACGTAGGACAAGGAGGAGTATAAAAGGACACAAATTTCTCTATTTTCAAGACCATCTTTCTGAACTGCACTCATGCTTGGGACCCTTGTAACCTCTTCCTTCACTTAACTCAAAAGTTTCAATGCTTATTTTGAAGGAATGAGGAAGGTAAACATTAGCTGGTGTTTGTGTATCCAATGATTGTGGCATGCCCCTTTTCCCTCTTCTTGTTCGAGCTTGCAATTTCCACAAGAAAGCTGGGCAAAGGAGAGTGGAAGAATATAGAAGAAGAAGAAGAAGAAGAAGAAGAGGTTGCCCAGAAAACGAAACGAAGAACAAAACGTATAGGAAGAGTAGCAATGTCGGGAAAGGCTTTATTTCTGGTGATTTGCTGTGAGCACAGAGTCCGAATCTGTTTTAATGATATAAAAAAAAAAAAAAAAACAGAAAATGAGTTGTGCTTAGGTTGAAAACTTTGTGAATGAATGTGTTTGAAGTGAAGTTGAGTGTAGAGTTATGTGTTTGAATATCTCTGTCTCTCTCCTACGTAGTGCTCACGTGGGGTCTGAGATGGTTGCTTCCATCGTGCTTTTCGCTTCTTTCTTGCTCTCTCTCTTTCTTTCTTTCTTGCTTTCTTTGCTCTGCAATGCAGTGGGTGGAGTGGTGAGTCACCAGCGCAGGGGCAGCGGCAGAGACCCAGAGAAGGCAAAGACAAAAATCACTGA

mRNA sequence

ATGGAAGTAGAAGACCCAAATGAGTGGGTGGCGACTGTTGGAAGGCCGAAATTGGTAGAGGCAGCAAAGCAAGGCCGTTTGGGAAAAGCGGAAGCCCAGAGCGGGGGAATGGGTGGCTTGTCAATTTATCAAACAGAGGCCACAAGCGGAACAGTGCCTCGAGCTTTTAAAAAAATGGAAAACCCTGCCACTGCGCTCTGCGCTCTGCGCTCTGCCCTCTGCCCTCTCTGTCCTCTGTGGCTGTGTCTGGTGAACGGTGATGGTGGCAGAGCGGGTGGGTGGAGTGGTGAGTCACCAGCGCAGGGGCAGCGGCAGAGACCCAGAGAAGGCAAAGACAAAAATCACTGA

Coding sequence (CDS)

ATGGAAGTAGAAGACCCAAATGAGTGGGTGGCGACTGTTGGAAGGCCGAAATTGGTAGAGGCAGCAAAGCAAGGCCGTTTGGGAAAAGCGGAAGCCCAGAGCGGGGGAATGGGTGGCTTGTCAATTTATCAAACAGAGGCCACAAGCGGAACAGTGCCTCGAGCTTTTAAAAAAATGGAAAACCCTGCCACTGCGCTCTGCGCTCTGCGCTCTGCCCTCTGCCCTCTCTGTCCTCTGTGGCTGTGTCTGGTGAACGGTGATGGTGGCAGAGCGGGTGGGTGGAGTGGTGAGTCACCAGCGCAGGGGCAGCGGCAGAGACCCAGAGAAGGCAAAGACAAAAATCACTGA

Protein sequence

MEVEDPNEWVATVGRPKLVEAAKQGRLGKAEAQSGGMGGLSIYQTEATSGTVPRAFKKMENPATALCALRSALCPLCPLWLCLVNGDGGRAGGWSGESPAQGQRQRPREGKDKNH
Homology
[Close]
BLAST of CmoCh05G014220.1 vs. ExPASy TrEMBL
Match: A0A6J1G3V0 (uncharacterized protein LOC111450506 OS=Cucurbita moschata OX=3662 GN=LOC111450506 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MEVEDPNEWVATVGRPKLVEAAKQGRLGKAEAQSGGMGGLSIYQT 46
          MEVEDPNEWVATVGRPKLVEAAKQGRLGKAEAQSGGMGGLSIYQT
Sbjct: 1  MEVEDPNEWVATVGRPKLVEAAKQGRLGKAEAQSGGMGGLSIYQT 45

[Close]
BLAST of CmoCh05G014220.1 vs. NCBI nr
Match: KAG6599540.1 (hypothetical protein SDJN03_09318, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-29
Identity = 74/101 (73.27%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 1   MEVEDPNEWVATVGRPKLVEAAKQG---------RLGKAEAQSGGMGGLSIYQTEATSGT 60
           MEVEDPNEWVATVGRPKLVEAAKQ          R G+  A         +   EATSGT
Sbjct: 1   MEVEDPNEWVATVGRPKLVEAAKQSKAVWEKWKPRAGEWLACQFIKQAYQLTLAEATSGT 60

Query: 61  VPRAFKKMENPATALCALRSALCPLCPLWLCLVNGDGGRAG 93
           VPRAFKKMENPATALCALRSALCPLCPLWLCLVNGDGGRAG
Sbjct: 61  VPRAFKKMENPATALCALRSALCPLCPLWLCLVNGDGGRAG 101

[Close]
BLAST of CmoCh05G014220.1 vs. NCBI nr
Match: KAG7030518.1 (hypothetical protein SDJN02_08866, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-29
Identity = 74/101 (73.27%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 1   MEVEDPNEWVATVGRPKLVEAAKQG---------RLGKAEAQSGGMGGLSIYQTEATSGT 60
           MEVEDPNEWVATVGRPKLVEAAKQ          R G+  A         +   EATSGT
Sbjct: 1   MEVEDPNEWVATVGRPKLVEAAKQSKAVWEKWKPRAGEWLACQFIKQAYQLTLAEATSGT 60

Query: 61  VPRAFKKMENPATALCALRSALCPLCPLWLCLVNGDGGRAG 93
           VPRAFKKMENPATALCALRSALCPLCPLWLCLVNGDGGRAG
Sbjct: 61  VPRAFKKMENPATALCALRSALCPLCPLWLCLVNGDGGRAG 101

[Close]
BLAST of CmoCh05G014220.1 vs. NCBI nr
Match: XP_022946453.1 (uncharacterized protein LOC111450506 [Cucurbita moschata])

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MEVEDPNEWVATVGRPKLVEAAKQGRLGKAEAQSGGMGGLSIYQT 46
          MEVEDPNEWVATVGRPKLVEAAKQGRLGKAEAQSGGMGGLSIYQT
Sbjct: 1  MEVEDPNEWVATVGRPKLVEAAKQGRLGKAEAQSGGMGGLSIYQT 45

The following BLAST results are available for this feature:
BLAST of CmoCh05G014220.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G014220.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G3V01.7e-15100.00uncharacterized protein LOC111450506 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
BLAST of CmoCh05G014220.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599540.14.2e-2973.27hypothetical protein SDJN03_09318, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030518.14.2e-2973.27hypothetical protein SDJN02_08866, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022946453.13.5e-15100.00uncharacterized protein LOC111450506 [Cucurbita moschata][more]
BLAST of CmoCh05G014220.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..115

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh05G014220CmoCh05G014220gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G014220.1:exon:26CmoCh05G014220.1:exon:26exon
CmoCh05G014220.1:exon:25CmoCh05G014220.1:exon:25exon
CmoCh05G014220.1:exon:24CmoCh05G014220.1:exon:24exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G014220.1:cdsCmoCh05G014220.1:cds_3CDS
CmoCh05G014220.1:cdsCmoCh05G014220.1:cds_2CDS
CmoCh05G014220.1:cdsCmoCh05G014220.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh05G014220.1CmoCh05G014220.1-proteinpolypeptide