CmoCh05G013240.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G013240.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 10255981 .. 10257221 (+)
Sequence length615
RNA-Seq ExpressionCmoCh05G013240.1
SyntenyCmoCh05G013240.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGGTGAGCTTTTACTTCATTATATTTCTTCTTTTACGTTCTTCATTGATTTTAGGAAGAAGAAGAATATGAACTGGTCGAGAGGTGACTGGATGTGTGGTGCTTGTGAACACGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGGTACTCAAAATATGGAGGCCCTCACCCTCAATACCCAACCGCACATGAACATGGTATCAAAACAGAAGAAGCTTTGGCTGGAGATTGGTATTGCAAATGTGGAGCTCATAATTATGCTACCCGATCAAGCTGCTATAGATGTCATGCATATAAGAGTCTTGATCTTGGTGCCTTTCCTGGTTGGAAATCTGGGGATTGGATCTGCACAAGGTATGTATACACGACCGACCACTGTTATCGAATAGATTTCAATTATGTTTCTAAACTTCAAACTAGTTCGAAAAAGTATATTCTTTACTCAAACAAAGATTGAAATTAACGTAACAGTTGAACGTGTAAAAATTAGAAGACTTAATGATATTATTTAGGAGTGTTCGTGGGTTATGTCAAGTTGAGCTGAGACATCTTTTTAAAACCAACTCAATTGTTCGAGTTTAAATTTTTTCATTTTGGCATAGCGGGAGCGCACCCTTGATGATTGCGTCGTTGTTCTTGGACTGTGAGGTCTCTTAGTCACATGGATAGCCAATTTATAAAATTTTCATTTATTTGAGTTCGAAACCCAACCCAAACCGTATGAGTTGGGTTGGACCGATCTCGTTTTTTAGGTCATCGAATATTTTAAACAACCTTGATATTATTTATAACGATATGCCATTTTATTCATCTAAAAAACGACGAGTAACGATATTATGTTGAAATTTGTGCAGATGTGAAACCCACAATTATGCTAGCAGAATGAAATGCTACAAATGCAGTTTTGGTAAGAAAATCAAATTCTTGACCCTTTTTTTAAGTTCACGGGAAAGATTCAAATCTCTGACCCGTAGTTTAACTAATTGAGTTATACTCGAGTATTAGAATTAATAATGTTAAAATATTTGTGTAGGAGGAGCTGTTTGAAATCGAGGGGTCTTGACATAGAAAACAAGATAACTCCGGGACTCTAAGCATCTATTGTATGCAATAGTATAGTGCATCTAATTCGCACGGAGTATCTGTCGAAACTTTCTCTTATCTTAGTATGGAACTGTAGGATCTTTTTTCCTAGTCGTATTGAATTAGTAAAAAAATAAAGGTTGGTGCTA

mRNA sequence

CCAAGGTGAGCTTTTACTTCATTATATTTCTTCTTTTACGTTCTTCATTGATTTTAGGAAGAAGAAGAATATGAACTGGTCGAGAGGTGACTGGATGTGTGGTGCTTGTGAACACGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGGTACTCAAAATATGGAGGCCCTCACCCTCAATACCCAACCGCACATGAACATGGTATCAAAACAGAAGAAGCTTTGGCTGGAGATTGGTATTGCAAATGTGGAGCTCATAATTATGCTACCCGATCAAGCTGCTATAGATGTCATGCATATAAGAGTCTTGATCTTGGTGCCTTTCCTGGTTGGAAATCTGGGGATTGGATCTGCACAAGATGTGAAACCCACAATTATGCTAGCAGAATGAAATGCTACAAATGCAGTTTTGGAGGAGCTGTTTGAAATCGAGGGGTCTTGACATAGAAAACAAGATAACTCCGGGACTCTAAGCATCTATTGTATGCAATAGTATAGTGCATCTAATTCGCACGGAGTATCTGTCGAAACTTTCTCTTATCTTAGTATGGAACTGTAGGATCTTTTTTCCTAGTCGTATTGAATTAGTAAAAAAATAAAGGTTGGTGCTA

Coding sequence (CDS)

ATGGAGGCCCTCACCCTCAATACCCAACCGCACATGAACATGGTATCAAAACAGAAGAAGCTTTGGCTGGAGATTGGTATTGCAAATGTGGAGCTCATAATTATGCTACCCGATCAAGCTGCTATAGATGTCATGCATATAAGAGTCTTGATCTTGGTGCCTTTCCTGGTTGGAAATCTGGGGATTGGATCTGCACAAGATGTGAAACCCACAATTATGCTAGCAGAATGA

Protein sequence

MEALTLNTQPHMNMVSKQKKLWLEIGIANVELIIMLPDQAAIDVMHIRVLILVPFLVGNLGIGSAQDVKPTIMLAE
Homology
The following BLAST results are available for this feature:
BLAST of CmoCh05G013240.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G013240.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G013240.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G013240.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh05G013240CmoCh05G013240gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G013240.1:exon:824CmoCh05G013240.1:exon:824exon
CmoCh05G013240.1:exon:825CmoCh05G013240.1:exon:825exon
CmoCh05G013240.1:exon:826CmoCh05G013240.1:exon:826exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G013240.1:five_prime_utrCmoCh05G013240.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G013240.1:cdsCmoCh05G013240.1:cdsCDS
CmoCh05G013240.1:cdsCmoCh05G013240.1:cds_2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G013240.1:three_prime_utrCmoCh05G013240.1:three_prime_utrthree_prime_UTR
CmoCh05G013240.1:three_prime_utrCmoCh05G013240.1:three_prime_utr_2three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh05G013240.1CmoCh05G013240.1-proteinpolypeptide