CmoCh05G003290.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G003290.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 1454137 .. 1455834 (-)
Sequence length210
RNA-Seq ExpressionCmoCh05G003290.1
SyntenyCmoCh05G003290.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGATGAGTGGCTTCTAAGTCCCTCTGCCCCTCTCTGCTTCACATTGGATTCATTGAGGAGCCGTGCAAGTAACGTTTTTTTACTTCAAAATGATCCATTATAAATTTAATTTTTAAAAATTTAAATATATATCTATTTGTAAATTTAATCATTTAATTATGATATTTTTTGAATTAATGGAATTAATTAAAAATAAATAAAGTTTTAAGGTTATATTAGATATAAACTAATTTTTAAAATTTTGAATTAATTAAAAATTTAGGAACAAAAAAAATACGAAATTAAAAATTTGGACTAAATTTTATAATTTAAAAAATTGTTGTACAATTCCATGTTTACCCTTCCGTTTCTCCCTTTTTCCTGTTCTCGCGAACTCCTCCCTTTCTTCGTTCTCTTGTGTCAGCTGAATCCTCAAGTTTACGCGCCTTCAAAGACGCTTGATCCTGTTCCTTCCAGCTTATCTCTATCAATTGTCCCTCCCCTCAATCTTCTTCGCCTGGCTGCTTCGAGGTTTGTTCGTGAATTTTCATTTTCCTTTGAGATTCTGTTGTGTTAGGGTTGCTGAAATCACGATTAGATTATTTTTGTGTTATTGTTCGCTATATCTCTCTCACTGTTCCAAAATGTTGTTCCAGAGTCATCTATCACAGATTAATTAGCGTTGAATGTACATGTTCTTCCAGCATGAGAATGGATTGAGGATTTGATGATTGTAATTGCTGTTTTGTTTATTACTTGTGCACATTTGTGAAAAACTGGCGTTTATCACTTTATTCTAGGCTGAGTACGGTGAATTTGACCTATGGAATCTGCAATTCCTTCTGGAAACTCTTTGCAATTCTTCACTTGGTAGTAGTTATTGATTAACAGCCGTATATTGTATTTTAGCACTATCACATACTGCCAGAGGCTTGATTAATGACATATAATGAATTTTAATATTCTTTTCATGATCTTGAAGAAGGAAAAGACTTATGGCTATTACATTCATGGTTGCTGGCCGAATTTCTTTGGATCTGTACTAATGTAGGCATGATTTTGTTTGTAAATGTTATTCACAGTCCTGTTTCTTTAGCAAACCTGAATCCATTTTTGCATTTCTTCTAAAGCCAGTTGCATTGATTCCATGATATCTTTTATTTTGCACGATAATCTCAGTAACTTTAGCACCAGCTCTGGATCAAGATTCTGGTCAAAATTGATGCTCTAATACCAATTGATAGGACTCTGATCTTGCAATAGAAATTGACAGAGAATAACACTGAAATCGTATTGCACTTGTAATGGCTTGCACTCTCCCATTGGCCTTATAGACTATGGTATGGATTTCTTTTTGGTTTATAAAAAATCTTCTACTGACGTGAAGTGTCAATTTATTTGACTAAAATGGTTTGGTTTGTGCTATGCAACAAAATGGAATTTCATCTGTATTATGAGATCCATGGGGCTTTTGTTTTAACTTCATGTGCCATTTATCGTTCATAGAGTTTATATAAACTATTTTTAATACACTTTTTCAATTCAGTTTTCTTTGATGGTAGTAATTTATCATACCTGCCTTCTCACTCTTCTTCTTAATTTCCCATGATGTTTTCATTGGTACTTTGTAGGAATTGGTAAAGCTATAAGCAAAGTTGTACACAATCATGATAGGGAGTTGATTGAGATTGCTGCACATAGACCCGATCCTTAG

mRNA sequence

ATGATGGATGAGTGGCTTCTAAGTCCCTCTGCCCCTCTCTGCTTCACATTGGATTCATTGAGGAGCCGTGCAACTTATCTCTATCAATTGTCCCTCCCCTCAATCTTCTTCGCCTGGCTGCTTCGAGGAATTGGTAAAGCTATAAGCAAAGTTGTACACAATCATGATAGGGAGTTGATTGAGATTGCTGCACATAGACCCGATCCTTAG

Coding sequence (CDS)

ATGATGGATGAGTGGCTTCTAAGTCCCTCTGCCCCTCTCTGCTTCACATTGGATTCATTGAGGAGCCGTGCAACTTATCTCTATCAATTGTCCCTCCCCTCAATCTTCTTCGCCTGGCTGCTTCGAGGAATTGGTAAAGCTATAAGCAAAGTTGTACACAATCATGATAGGGAGTTGATTGAGATTGCTGCACATAGACCCGATCCTTAG

Protein sequence

MMDEWLLSPSAPLCFTLDSLRSRATYLYQLSLPSIFFAWLLRGIGKAISKVVHNHDRELIEIAAHRPDP
Homology
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BLAST of CmoCh05G003290.1 vs. NCBI nr
Match: KAG6598520.1 (hypothetical protein SDJN03_08298, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 8.8e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 43  GIGKAISKVVHNHDRELIEIAAHRPDP 70
           GIGKAISKVVHNHDRELIEIAAHRPDP
Sbjct: 106 GIGKAISKVVHNHDRELIEIAAHRPDP 132

The following BLAST results are available for this feature:
BLAST of CmoCh05G003290.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G003290.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G003290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598520.18.8e-06100.00hypothetical protein SDJN03_08298, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh05G003290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh05G003290CmoCh05G003290gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G003290.1:exon:6681CmoCh05G003290.1:exon:6681exon
CmoCh05G003290.1:exon:6680CmoCh05G003290.1:exon:6680exon
CmoCh05G003290.1:exon:6679CmoCh05G003290.1:exon:6679exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G003290.1:cdsCmoCh05G003290.1:cds_3CDS
CmoCh05G003290.1:cdsCmoCh05G003290.1:cds_2CDS
CmoCh05G003290.1:cdsCmoCh05G003290.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh05G003290.1CmoCh05G003290.1-proteinpolypeptide