CmoCh04G029420.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G029420.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor MYB59-like
Location	Cmo_Chr04: 20839031 .. 20840133 (+)
Sequence length	733
RNA-Seq Expression	CmoCh04G029420.1
Synteny	CmoCh04G029420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGAAGAAGATATAAAAATGGATGCAGAAGAAAAAGAATGGAGGAAGGGGCCATGGACTCCTGAGGAAGACAAGTTGTTGTCTGAATACGTGAAAGTGCATGGCGAAGGAAGATGGACTTCTGTTGCCACTGGTTCACGTAAAAACATATTCTCTTCCCTTTTTTTTTTCCCTCTAAACTGGAAGATTAGAGTTAAAAGACATCAATCTTATTCAGGTTTGAATAGAACGGGAAAAAGTTGCAGATTGAGATGGGTGAATTATCTTAGACCGGGTCTTAAGAGAGGCCATCTCACTCCTCTTGAGGAAGGCATTATCATAGAACTTCATGCTCTTTGGGGTAACAAGTAAGTAATTATTCTATAACAACTCAAACCCACCGCTAGCAGATATTGAGCTTTTTTAAACTCCTTCTTTGGGCTTTTCCTTTCGGACTTCCCATCAAGGTTTTTAAAACGCATTTGTTGGGAGAAGTTTCCACATCTTTATAAAAAATGTTTCGTTCTCCTCTCCAACTGATGTGAGATCTCATAATCTACCCACCTTCGAAGCCCGACGTCAAGATCTCACATATTCCTCTCTCCACATTTTTTTTACCCATCTCTCTCTTAACCAAATGGGTAATGTTTTAACTGACAGATGGTCAACCATAGCAAGATATTTACCAGGAAGAACTGATAATGAAATAAAAAATTACTGGAGAACGCATTTCAAGAAGATGAAGCCAAAGAGAGAGGCTCAAATGGTTGTTCCAAAACCAGACAACAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATGTGGAAGAGACAATGATGAATTAGGGATGGTCTTTACAGAGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACCTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTTTGGGAAGATTCAAACAACCTTTTGTAATGGGGAACCTATCTTTTTAAGAAGCAATGTTGACTATAGATCCAACGACATAATACAAGTTTGCTATTAGAATATGGATGGATTATGAACCCTGGG

mRNA sequence

AGAAGAAGAAGAAGATATAAAAATGGATGCAGAAGAAAAAGAATGGAGGAAGGGGCCATGGACTCCTGAGGAAGACAAGTTGTTGTCTGAATACGTGAAAGTGCATGGCGAAGGAAGATGGACTTCTGTTGCCACTGGTTCACGTTTGAATAGAACGGGAAAAAGTTGCAGATTGAGATGGGTGAATTATCTTAGACCGGGTCTTAAGAGAGGCCATCTCACTCCTCTTGAGGAAGGCATTATCATAGAACTTCATGCTCTTTGGGGTAACAAATGGTCAACCATAGCAAGATATTTACCAGGAAGAACTGATAATGAAATAAAAAATTACTGGAGAACGCATTTCAAGAAGATGAAGCCAAAGAGAGAGGCTCAAATGGTTGTTCCAAAACCAGACAACAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATGTGGAAGAGACAATGATGAATTAGGGATGGTCTTTACAGAGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACCTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTTTGGGAAGATTCAAACAACCTTTTGTAATGGGGAACCTATCTTTTTAAGAAGCAATGTTGACTATAGATCCAACGACATAATACAAGTTTGCTATTAGAATATGGATGGATTATGAACCCTGGG

Coding sequence (CDS)

ATGGATGCAGAAGAAAAAGAATGGAGGAAGGGGCCATGGACTCCTGAGGAAGACAAGTTGTTGTCTGAATACGTGAAAGTGCATGGCGAAGGAAGATGGACTTCTGTTGCCACTGGTTCACGTTTGAATAGAACGGGAAAAAGTTGCAGATTGAGATGGGTGAATTATCTTAGACCGGGTCTTAAGAGAGGCCATCTCACTCCTCTTGAGGAAGGCATTATCATAGAACTTCATGCTCTTTGGGGTAACAAATGGTCAACCATAGCAAGATATTTACCAGGAAGAACTGATAATGAAATAAAAAATTACTGGAGAACGCATTTCAAGAAGATGAAGCCAAAGAGAGAGGCTCAAATGGTTGTTCCAAAACCAGACAACAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATGTGGAAGAGACAATGATGAATTAGGGATGGTCTTTACAGAGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACCTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTTTGGGAAGATTCAAACAACCTTTTGTAA

Protein sequence

MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMVVPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDSNNLL

Homology

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BLAST of CmoCh04G029420.1 vs. ExPASy Swiss-Prot
Match: Q4JL84 (Transcription factor MYB59 OS=Arabidopsis thaliana OX=3702 GN=MYB59 PE=2 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-40
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           M   ++E+RKGPWT +ED LL  +V + G+ RW  VA  S LNRTGKSCRLRWVNYL PG
Sbjct: 1   MKLVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQM 120
           LKRG +TP EE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K   +++  M
Sbjct: 61  LKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPM 119

[Close]

BLAST of CmoCh04G029420.1 vs. ExPASy Swiss-Prot
Match: Q10MB4 (Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-38
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 9   RKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRGHLTP 68
           R+GPWT EED LL  Y+  HGEGRW S+A  + L RTGKSCRLRW+NYLRP L+RG++TP
Sbjct: 21  RRGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDLRRGNITP 80

Query: 69  LEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 111
            E+ +I+ELH+ WGN+WS IA++LPGRTDNEIKNYWRT  +K
Sbjct: 81  QEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 122

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BLAST of CmoCh04G029420.1 vs. ExPASy Swiss-Prot
Match: Q9C9G7 (Transcription factor MYB62 OS=Arabidopsis thaliana OX=3702 GN=MYB62 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-38
Identity = 69/109 (63.30%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 2   DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGL 61
           ++E++E R+GPWT EED LL+ Y+  +GEGRW  VA  + L RTGKSCRLRW+NYL+P +
Sbjct: 13  ESEDEELRRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYLKPDI 72

Query: 62  KRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 111
           +RG+LTP E+ +I+ELH+ WGN+WS IA+YLPGRTDNEIKNYWRT  +K
Sbjct: 73  RRGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 121

[Close]

BLAST of CmoCh04G029420.1 vs. ExPASy Swiss-Prot
Match: Q4JL76 (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-38
Identity = 74/114 (64.91%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 6   KEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRGH 65
           +E RKGPWT +ED  L   V++ GE RW  +A  S LNRTGKSCRLRWVNYL PGLKRG 
Sbjct: 6   EEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGR 65

Query: 66  LTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQM 120
           ++P EE +I+ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K   +R++ M
Sbjct: 66  MSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKSNM 119

[Close]

BLAST of CmoCh04G029420.1 vs. ExPASy Swiss-Prot
Match: Q9LX82 (Transcription factor MYB48 OS=Arabidopsis thaliana OX=3702 GN=MYB48 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-38
Identity = 72/113 (63.72%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           +E+  RKGPWT +ED LL  +V + G+ RW  +A  S LNRTGKSCRLRWVNYL PGLKR
Sbjct: 3   QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKR 62

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKRE 117
           G +TP EE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K   +++
Sbjct: 63  GKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 115

[Close]

BLAST of CmoCh04G029420.1 vs. ExPASy TrEMBL
Match: A0A6J1GRA0 (transcription factor MYB59-like OS=Cucurbita moschata OX=3662 GN=LOC111456806 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.1e-117
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG
Sbjct: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120
           LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV
Sbjct: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120

Query: 121 VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180
           VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT
Sbjct: 121 VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180

Query: 181 WAAAAAAEESYLWGGLWEDSNNLL 205
           WAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 181 WAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of CmoCh04G029420.1 vs. ExPASy TrEMBL
Match: A0A6J1JQZ1 (transcription factor MYB59-like OS=Cucurbita maxima OX=3661 GN=LOC111487542 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.4e-113
Identity = 199/204 (97.55%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG
Sbjct: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120
           LKRGHLTPLEEGI+IELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV
Sbjct: 61  LKRGHLTPLEEGIVIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120

Query: 121 VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180
           VPKPDNKTS PISFEQDREEKDMMK C RDN ELGMVFTEPAAMAADQSYLSMVYEDFAT
Sbjct: 121 VPKPDNKTSAPISFEQDREEKDMMKLCERDNAELGMVFTEPAAMAADQSYLSMVYEDFAT 180

Query: 181 WAAAAAAEESYLWGGLWEDSNNLL 205
           WAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 181 WAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of CmoCh04G029420.1 vs. ExPASy TrEMBL
Match: A0A5A7T8Y5 (Transcription factor MYB59-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002300 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.8e-76
Identity = 147/209 (70.33%), Postives = 163/209 (77.99%), Query Frame = 0


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           EE+EWRKGPWT EEDKLL EYVKVHGEGRW+SVA GS LNRTGKSCRLRWVNYLRPGLKR
Sbjct: 5   EEQEWRKGPWTVEEDKLLCEYVKVHGEGRWSSVAKGSGLNRTGKSCRLRWVNYLRPGLKR 64

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMVVPK 123
           GHLTP EEGIIIELHALWGNKWSTIA+YLPGRTDNEIKNYWRTHFKKMKP+R++Q++VPK
Sbjct: 65  GHLTPQEEGIIIELHALWGNKWSTIAKYLPGRTDNEIKNYWRTHFKKMKPRRKSQIIVPK 124

Query: 124 PDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQS--YLSMVYEDFATW 183
            DNKT PPIS   +    ++MKP   D+D+LGMVFT+P AM   +   YLS VY+D   W
Sbjct: 125 TDNKTLPPIS-RCEEHVMELMKP--YDSDDLGMVFTDPTAMEDHEQTYYLSKVYQDLTNW 184

Query: 184 --------AAAAAAEESYLWGGLWEDSNN 203
                   A  A  EE  LW GLWE   N
Sbjct: 185 TVESVAVAAVVAEQEEESLWDGLWEVPEN 210

[Close]

BLAST of CmoCh04G029420.1 vs. ExPASy TrEMBL
Match: A0A1S3CAT1 (transcription factor MYB59-like OS=Cucumis melo OX=3656 GN=LOC103498747 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.5e-75
Identity = 148/211 (70.14%), Postives = 165/211 (78.20%), Query Frame = 0


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           EE+EWRKGPWT EEDKLL EYVKVHGEGRW+SVA GS LNRTGKSCRLRWVNYL+PGLKR
Sbjct: 5   EEQEWRKGPWTVEEDKLLCEYVKVHGEGRWSSVAKGSGLNRTGKSCRLRWVNYLKPGLKR 64

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPK--REAQMVV 123
           GHLTP EEGIIIELHALWGNKWSTIA+YLPGRTDNEIKNYWRTHFKKMKPK  R++Q++V
Sbjct: 65  GHLTPQEEGIIIELHALWGNKWSTIAKYLPGRTDNEIKNYWRTHFKKMKPKPRRKSQIIV 124

Query: 124 PKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQS--YLSMVYEDFA 183
           PK DNKT PPIS  ++R   ++MKP   D+D+LGMVFT+P AM   +   YLS VY+D  
Sbjct: 125 PKTDNKTLPPISRCEER-VMELMKP--YDSDDLGMVFTDPTAMEDHEQTYYLSKVYQDLT 184

Query: 184 TW--------AAAAAAEESYLWGGLWEDSNN 203
            W        A  A  EE  LW GLWE   N
Sbjct: 185 NWTVESGAVAAVVAEQEEESLWDGLWEVPEN 212

[Close]

BLAST of CmoCh04G029420.1 vs. ExPASy TrEMBL
Match: A0A0A0KSK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G641610 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.1e-73
Identity = 140/199 (70.35%), Postives = 157/199 (78.89%), Query Frame = 0


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           EE+EWRKGPWT +EDKLL EYVKVHGEGRW SVA GS LNRTGKSCRLRWVNYLRPGLKR
Sbjct: 33  EEQEWRKGPWTSDEDKLLCEYVKVHGEGRWNSVAKGSGLNRTGKSCRLRWVNYLRPGLKR 92

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMVVPK 123
            HLTP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKR+++++V K
Sbjct: 93  CHLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKRKSKIMVGK 152

Query: 124 PDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQS--YLSMVYEDFATW 183
            DNKT PP++   +    ++MKP   DN++L MVFTEP AM   +   YLSMVY+D   W
Sbjct: 153 TDNKTMPPVT-RCEEHVMELMKPYDSDNNDLSMVFTEPTAMEDHEQTYYLSMVYQDLTNW 212

Query: 184 AAAAAAEESYLW--GGLWE 199
           AA    E  + W  GG  E
Sbjct: 213 AAEKKEESLWEWPLGGFRE 230

[Close]

BLAST of CmoCh04G029420.1 vs. NCBI nr
Match: XP_022954581.1 (transcription factor MYB59-like [Cucurbita moschata])

HSP 1 Score: 431.4 bits (1108), Expect = 4.3e-117
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG
Sbjct: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120
           LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV
Sbjct: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120

Query: 121 VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180
           VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT
Sbjct: 121 VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180

Query: 181 WAAAAAAEESYLWGGLWEDSNNLL 205
           WAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 181 WAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of CmoCh04G029420.1 vs. NCBI nr
Match: KAG6602540.1 (Transcription factor MYB59, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 424.9 bits (1091), Expect = 4.0e-115
Identity = 202/204 (99.02%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG
Sbjct: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120
           LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV
Sbjct: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120

Query: 121 VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180
           VPKPD KTSPPISFEQDREEKDMMKPC RDNDELGMVFTEPAAMAADQSYLSMVYEDFAT
Sbjct: 121 VPKPDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180

Query: 181 WAAAAAAEESYLWGGLWEDSNNLL 205
           WAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 181 WAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of CmoCh04G029420.1 vs. NCBI nr
Match: XP_023554284.1 (transcription factor MYB59-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 422.5 bits (1085), Expect = 2.0e-114
Identity = 201/204 (98.53%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG
Sbjct: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120
           LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV
Sbjct: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120

Query: 121 VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180
           VP+PDNKTSPPISFEQDREEKDMMKP  RDNDELGMVFTEPAAMAADQSYLSMVYEDFAT
Sbjct: 121 VPQPDNKTSPPISFEQDREEKDMMKPYERDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180

Query: 181 WAAAAAAEESYLWGGLWEDSNNLL 205
           WAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 181 WAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of CmoCh04G029420.1 vs. NCBI nr
Match: XP_022990755.1 (transcription factor MYB59-like [Cucurbita maxima])

HSP 1 Score: 417.9 bits (1073), Expect = 4.9e-113
Identity = 199/204 (97.55%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG
Sbjct: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120
           LKRGHLTPLEEGI+IELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV
Sbjct: 61  LKRGHLTPLEEGIVIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMV 120

Query: 121 VPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDFAT 180
           VPKPDNKTS PISFEQDREEKDMMK C RDN ELGMVFTEPAAMAADQSYLSMVYEDFAT
Sbjct: 121 VPKPDNKTSAPISFEQDREEKDMMKLCERDNAELGMVFTEPAAMAADQSYLSMVYEDFAT 180

Query: 181 WAAAAAAEESYLWGGLWEDSNNLL 205
           WAAAAAAEESYLWGGLWEDSNNLL
Sbjct: 181 WAAAAAAEESYLWGGLWEDSNNLL 204

[Close]

BLAST of CmoCh04G029420.1 vs. NCBI nr
Match: XP_038889193.1 (transcription factor MYB59-like [Benincasa hispida])

HSP 1 Score: 308.9 bits (790), Expect = 3.2e-80
Identity = 155/202 (76.73%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 1   MDAEE-KEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRP 60
           MD +E +EWRKGPWT EEDKLL EYVKVHGEGRWTSVA GS LNRTGKSCRLRWVNYLRP
Sbjct: 1   MDGKEVQEWRKGPWTVEEDKLLCEYVKVHGEGRWTSVAIGSGLNRTGKSCRLRWVNYLRP 60

Query: 61  GLKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQM 120
           GLKRGH TP EEGI+IELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKR+A++
Sbjct: 61  GLKRGHFTPQEEGIVIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKRKAEI 120

Query: 121 VVPKPD-NKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVYEDF 180
           + PK D NKT PPI+  ++   K++MKP  RDND L M+FTEPAAM  +QSYLSMVY+DF
Sbjct: 121 IAPKTDNNKTLPPITTSEE-HVKELMKPYERDND-LAMLFTEPAAMEDEQSYLSMVYQDF 180

Query: 181 ATWAAAAAAEESYLWGGLWEDS 201
              A A   EES LWGGLWE S
Sbjct: 181 VIVADAVEEEES-LWGGLWEVS 199

[Close]

BLAST of CmoCh04G029420.1 vs. TAIR 10
Match: AT3G30210.1 (myb domain protein 121 )

HSP 1 Score: 199.5 bits (506), Expect = 2.6e-51
Identity = 106/203 (52.22%), Postives = 129/203 (63.55%), Query Frame = 0


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           +++  RKGPWT EEDKLL+EYV  HGEGRW++VA  + LNR+GKSCRLRWVNYLRPGLKR
Sbjct: 23  QQQGCRKGPWTLEEDKLLAEYVTSHGEGRWSTVAKCAGLNRSGKSCRLRWVNYLRPGLKR 82

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMVVPK 123
           G +TP EEGII+ELH+LWGNKWSTIARYLPGRTDNEIKNYWRTH+KK +     Q  V K
Sbjct: 83  GQITPQEEGIILELHSLWGNKWSTIARYLPGRTDNEIKNYWRTHYKKNQKSSSKQDKVKK 142

Query: 124 P--------DNKTSPPISFEQDREEKDMMKPCGRDND-ELGMVFTEPAAMAADQSYLSMV 183
                    D K  P    E  + +         DND  +      P ++  D+ Y  M 
Sbjct: 143 SLSRKQQQVDLKPQPQAQSENHQSQLVSQDHMNIDNDHNIASSLYYPTSVFDDKLY--MP 202

Query: 184 YEDFATWAAAAAAEESYLWGGLW 198
                T +  +  +E +LWG LW
Sbjct: 203 QSVATTSSDHSMIDEGHLWGSLW 223

[Close]

BLAST of CmoCh04G029420.1 vs. TAIR 10
Match: AT4G13480.1 (myb domain protein 79 )

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-47
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 5   EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRG 64
           E+ WRKGPWT EED+LL EYV+VHGEGRW SV+  + L R GKSCRLRWVNYLRP LKRG
Sbjct: 3   EEVWRKGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNGKSCRLRWVNYLRPDLKRG 62

Query: 65  HLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 111
            +TP EE II+ELHA WGN+WSTIAR LPGRTDNEIKNYWRTHFKK
Sbjct: 63  QITPHEESIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKK 108

[Close]

BLAST of CmoCh04G029420.1 vs. TAIR 10
Match: AT3G24310.1 (myb domain protein 305 )

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-46
Identity = 89/137 (64.96%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 5   EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRG 64
           E+ WRKGPWT EED+LL +YV++HGEGRW SVA  + L R GKSCRLRWVNYLRP LKRG
Sbjct: 15  EEGWRKGPWTAEEDRLLIDYVQLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRG 74

Query: 65  HLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK--MKPKREAQMVVP 124
            +TP EE II+ELHA WGN+WSTIAR LPGRTDNEIKNYWRTHFKK    P   A+    
Sbjct: 75  QITPHEETIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPTNSAE---- 134

Query: 125 KPDNKTSPPISFEQDRE 140
           K  N+      F+Q R+
Sbjct: 135 KTKNRILKRQQFQQQRQ 147

[Close]

BLAST of CmoCh04G029420.1 vs. TAIR 10
Match: AT5G59780.3 (myb domain protein 59 )

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-41
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           M   ++E+RKGPWT +ED LL  +V + G+ RW  VA  S LNRTGKSCRLRWVNYL PG
Sbjct: 1   MKLVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQM 120
           LKRG +TP EE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K   +++  M
Sbjct: 61  LKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPM 119

[Close]

BLAST of CmoCh04G029420.1 vs. TAIR 10
Match: AT1G68320.1 (myb domain protein 62 )

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-39
Identity = 69/109 (63.30%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 2   DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGL 61
           ++E++E R+GPWT EED LL+ Y+  +GEGRW  VA  + L RTGKSCRLRW+NYL+P +
Sbjct: 13  ESEDEELRRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYLKPDI 72

Query: 62  KRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 111
           +RG+LTP E+ +I+ELH+ WGN+WS IA+YLPGRTDNEIKNYWRT  +K
Sbjct: 73  RRGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 121

The following BLAST results are available for this feature:

BLAST of CmoCh04G029420.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4JL84	3.4e-40	63.03	Transcription factor MYB59 OS=Arabidopsis thaliana OX=3702 GN=MYB59 PE=2 SV=2	[more]
Q10MB4	1.4e-38	66.67	Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 ...	[more]
Q9C9G7	1.4e-38	63.30	Transcription factor MYB62 OS=Arabidopsis thaliana OX=3702 GN=MYB62 PE=2 SV=1	[more]
Q4JL76	1.4e-38	64.91	Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBAS2 PE...	[more]
Q9LX82	1.9e-38	63.72	Transcription factor MYB48 OS=Arabidopsis thaliana OX=3702 GN=MYB48 PE=2 SV=1	[more]

BLAST of CmoCh04G029420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRA0	2.1e-117	100.00	transcription factor MYB59-like OS=Cucurbita moschata OX=3662 GN=LOC111456806 PE...	[more]
A0A6J1JQZ1	2.4e-113	97.55	transcription factor MYB59-like OS=Cucurbita maxima OX=3661 GN=LOC111487542 PE=4...	[more]
A0A5A7T8Y5	1.8e-76	70.33	Transcription factor MYB59-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CAT1	1.5e-75	70.14	transcription factor MYB59-like OS=Cucumis melo OX=3656 GN=LOC103498747 PE=4 SV=...	[more]
A0A0A0KSK2	4.1e-73	70.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G641610 PE=4 SV=1	[more]

BLAST of CmoCh04G029420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954581.1	4.3e-117	100.00	transcription factor MYB59-like [Cucurbita moschata]	[more]
KAG6602540.1	4.0e-115	99.02	Transcription factor MYB59, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023554284.1	2.0e-114	98.53	transcription factor MYB59-like [Cucurbita pepo subsp. pepo]	[more]
XP_022990755.1	4.9e-113	97.55	transcription factor MYB59-like [Cucurbita maxima]	[more]
XP_038889193.1	3.2e-80	76.73	transcription factor MYB59-like [Benincasa hispida]	[more]

BLAST of CmoCh04G029420.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G30210.1	2.6e-51	52.22	myb domain protein 121	[more]
AT4G13480.1	2.9e-47	78.30	myb domain protein 79	[more]
AT3G24310.1	1.9e-46	64.96	myb domain protein 305	[more]
AT5G59780.3	2.4e-41	63.03	myb domain protein 59	[more]
AT1G68320.1	1.0e-39	63.30	myb domain protein 62	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 62..110 e-value: 5.8E-13 score: 59.1 coord: 9..59 e-value: 7.7E-16 score: 68.6
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 58..108 score: 9.082305
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 5..57 score: 11.625421
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..57 e-value: 6.67723E-11 score: 53.3482
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 67..108 e-value: 1.01408E-8 score: 47.5702
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 65..107 e-value: 1.5E-12 score: 47.5 coord: 10..57 e-value: 1.6E-16 score: 60.2
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 62..112 score: 19.974339
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 5..61 score: 24.802317
None	No IPR available	GENE3D	1.10.10.60		coord: 65..141 e-value: 1.9E-19 score: 71.5
None	No IPR available	GENE3D	1.10.10.60		coord: 10..62 e-value: 1.5E-19 score: 71.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..139
None	No IPR available	PANTHER	PTHR45675:SF17	MYB TRANSCRIPTION FACTOR	coord: 4..198
IPR044676	MYB-like transcription factor EOBI/EOBII-like, plant	PANTHER	PTHR45675	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	coord: 4..198
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 8..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G029420	CmoCh04G029420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G029420.1:exon:4234	CmoCh04G029420.1:exon:4234	exon
CmoCh04G029420.1:exon:4235	CmoCh04G029420.1:exon:4235	exon
CmoCh04G029420.1:exon:4236	CmoCh04G029420.1:exon:4236	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G029420.1:five_prime_utr	CmoCh04G029420.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G029420.1:cds	CmoCh04G029420.1:cds	CDS
CmoCh04G029420.1:cds	CmoCh04G029420.1:cds_2	CDS
CmoCh04G029420.1:cds	CmoCh04G029420.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G029420.1:three_prime_utr	CmoCh04G029420.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G029420.1	CmoCh04G029420.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding