CmoCh04G001070.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G001070.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 568056 .. 568732 (-)
Sequence length	354
RNA-Seq Expression	CmoCh04G001070.1
Synteny	CmoCh04G001070.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCAAAGGAAAAAGAAGAAAAAAGAGCTTACAGAAAACCCCTCATTCACCTGCAAATGGAGATAAGATGCGAAAAGAAAAGTTGTATCAGTTATATCCCTCACTTTTCAGTAAACCCACTTGATATCTATATCAGGACCGCCATTAAAACTCAAAAACAGAGTAGTTTTTGTATATTAGGGATATTTTGGCAAAGGGGCTCATAAATGCAGAATGGAGATGATGGGCCCTCATCATTACCTGACAAGATTCTAAGCCACTTCTCTCTTTCCAGTTGGTAAAACAGAAAACTCACTGTTAGTGTTAGCCTCTGTTCTTCAGAGAAGAGAAGAAAACAAGCTTCTCCTTCAATGGCGTCTGAAATTCCTCCTCACAATAAAGAAGAAGTGGGAATCAGAAATGGCAGAATGAAAAGGAAAGAAGATCACGTGAGCGCATGACAGTTGCAAATTAGTCTCACACAAACGAAGCGTCCACCAAAACGTCCATTTCTCTCTCCTCTCTCCTCTGGTTTTTTTTTTTTTTTTGTTTTTTTGCTAGAAACTTCACAGGATGAAGAAATCAAGGCCTACCCGTCCAAAGATTGAGGAAGATCGTGCAGAACATGCCCTTTATTACATCAAATGCTTGTTTCAATGCCCTTCTTCGTTTCAGTGTTCCACCATTTTTTAA

mRNA sequence

ATGAAATTCAAAGGAAAAAGAAGAAAAAAGAGCTTACAGAAAACCCCTCATTCACCTGCAAATGGAGATAAGATGCGAAAAGAAAAGTTGTATCAGTTATATCCCTCACTTTTCAAGAAGAGAAGAAAACAAGCTTCTCCTTCAATGGCGTCTGAAATTCCTCCTCACAATAAAGAAGAAGTGGGAATCAGAAATGGCAGAATGAAAAGGAAAGAAGATCACAAACTTCACAGGATGAAGAAATCAAGGCCTACCCGTCCAAAGATTGAGGAAGATCGTGCAGAACATGCCCTTTATTACATCAAATGCTTGTTTCAATGCCCTTCTTCGTTTCAGTGTTCCACCATTTTTTAA

Coding sequence (CDS)

ATGAAATTCAAAGGAAAAAGAAGAAAAAAGAGCTTACAGAAAACCCCTCATTCACCTGCAAATGGAGATAAGATGCGAAAAGAAAAGTTGTATCAGTTATATCCCTCACTTTTCAAGAAGAGAAGAAAACAAGCTTCTCCTTCAATGGCGTCTGAAATTCCTCCTCACAATAAAGAAGAAGTGGGAATCAGAAATGGCAGAATGAAAAGGAAAGAAGATCACAAACTTCACAGGATGAAGAAATCAAGGCCTACCCGTCCAAAGATTGAGGAAGATCGTGCAGAACATGCCCTTTATTACATCAAATGCTTGTTTCAATGCCCTTCTTCGTTTCAGTGTTCCACCATTTTTTAA

Protein sequence

MKFKGKRRKKSLQKTPHSPANGDKMRKEKLYQLYPSLFKKRRKQASPSMASEIPPHNKEEVGIRNGRMKRKEDHKLHRMKKSRPTRPKIEEDRAEHALYYIKCLFQCPSSFQCSTIF

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh04G001070.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G001070.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G001070.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G001070.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G001070	CmoCh04G001070	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001070.1:exon:922	CmoCh04G001070.1:exon:922	exon
CmoCh04G001070.1:exon:923	CmoCh04G001070.1:exon:923	exon
CmoCh04G001070.1:exon:924	CmoCh04G001070.1:exon:924	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001070.1:cds	CmoCh04G001070.1:cds_3	CDS
CmoCh04G001070.1:cds	CmoCh04G001070.1:cds_2	CDS
CmoCh04G001070.1:cds	CmoCh04G001070.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001070.1	CmoCh04G001070.1-protein	polypeptide