CmoCh03G002350.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G002350.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description2-dehydro-3-deoxyphosphooctonate aldolase
LocationCmo_Chr03: 3602827 .. 3603296 (+)
Sequence length306
RNA-Seq ExpressionCmoCh03G002350.1
SyntenyCmoCh03G002350.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACCACAAACTAGTAGTAATGTCACGTTGACACCATTCCATACTTGATAATGTGCTAATCACTCAACTCTAATGCCTTGAATGTCAAGGGCATCAAGCTTCTTGGGTCTTTTGTAATACTTGAGCAGGAGAGAACTGCAAACAACACTAACAGAAGAGGCAGCCATTGCTGCTCCTGCAATCCATGGCGGTAACCGAAATCGAGTTGCTGGGAATAGGACTCCTGCTGCAATAGGGATACCGAGGAGATTGTAACCGAGCGCCCAAACGTAGTTCAGACGGATCCTGGAAAACGTTTTCCTTGAAAGGTCGATGGCTGTTATGACATCCTCCAAGTTGCTTTTCATAAGAACTATGTCAGCTGCCTCAATGGCGATGTCTGTGCCTGCACCAATTGCCATTCCAACATCTGCAGCCACAAGCGCCGGTGAGTCGTTGATCCCATCTCCCACCATTGCCACCGTATGA

mRNA sequence

ATGTACCACAAACTAGTAGTAATGAGAGAACTGCAAACAACACTAACAGAAGAGGCAGCCATTGCTGCTCCTGCAATCCATGGCGGTAACCGAAATCGAGTTGCTGGGAATAGGACTCCTGCTGCAATAGGGATACCGAGGAGATTGTCGATGGCTGTTATGACATCCTCCAAGTTGCTTTTCATAAGAACTATGTCAGCTGCCTCAATGGCGATGTCTGTGCCTGCACCAATTGCCATTCCAACATCTGCAGCCACAAGCGCCGGTGAGTCGTTGATCCCATCTCCCACCATTGCCACCGTATGA

Coding sequence (CDS)

ATGTACCACAAACTAGTAGTAATGAGAGAACTGCAAACAACACTAACAGAAGAGGCAGCCATTGCTGCTCCTGCAATCCATGGCGGTAACCGAAATCGAGTTGCTGGGAATAGGACTCCTGCTGCAATAGGGATACCGAGGAGATTGTCGATGGCTGTTATGACATCCTCCAAGTTGCTTTTCATAAGAACTATGTCAGCTGCCTCAATGGCGATGTCTGTGCCTGCACCAATTGCCATTCCAACATCTGCAGCCACAAGCGCCGGTGAGTCGTTGATCCCATCTCCCACCATTGCCACCGTATGA

Protein sequence

MYHKLVVMRELQTTLTEEAAIAAPAIHGGNRNRVAGNRTPAAIGIPRRLSMAVMTSSKLLFIRTMSAASMAMSVPAPIAIPTSAATSAGESLIPSPTIATV
Homology
BLAST of CmoCh03G002350.1 vs. ExPASy TrEMBL
Match: A0A0A9PTB8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.5e-11
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 50  SMAVMTSSKLLFIRTMSAASMAMSVPAPIAIPTSAATSAGESLIPSPTIATV 102
           SMAV+TSSKLLF+RTMSAASMA SVPAPIA PTSA TSAGESLIPSPTIATV
Sbjct: 10  SMAVITSSKLLFMRTMSAASMATSVPAPIARPTSADTSAGESLIPSPTIATV 61

BLAST of CmoCh03G002350.1 vs. ExPASy TrEMBL
Match: A0A803LQK5 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0

Query: 7   VMRELQTTLTEEAAIAAPAIHGGNRNRVAGNRTPAAIGIP 47
           + R+ QTTLT+EAAIAAPAIHGG R    GN+TPAAIGIP
Sbjct: 250 INRDPQTTLTDEAAIAAPAIHGGKRTLSKGNKTPAAIGIP 289

BLAST of CmoCh03G002350.1 vs. ExPASy TrEMBL
Match: A0A5A7Q0B8 (2-dehydro-3-deoxyphosphooctonate aldolase OS=Striga asiatica OX=4170 GN=STAS_14866 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-05
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 51 MAVMTSSKLLFIRTMSAASMAMSVPAPIAIPTSAATSAGES 92
          MAV TSS+LLFI TMSAAS+A SVPAPIA+PTSAATSAGES
Sbjct: 1  MAVATSSRLLFISTMSAASIATSVPAPIAMPTSAATSAGES 41

BLAST of CmoCh03G002350.1 vs. ExPASy TrEMBL
Match: A0A1V5TC75 (Uncharacterized protein OS=Firmicutes bacterium ADurb.Bin262 OX=1852887 GN=BWY37_02069 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 43  IGIPRRLSMAVMTSSKLLFIRTMSAASMAMSVPAPIAIPTSAATSAGESLIPSPTIATV 102
           + + R  S AV  S + LFI T+SA SMAMSVPAP+A+PTSA   AG SL+PSP I TV
Sbjct: 3   LSVARLSSTAVTASRRSLFINTISADSMAMSVPAPMAMPTSARARAGASLMPSPIIPTV 61

BLAST of CmoCh03G002350.1 vs. NCBI nr
Match: GER38346.1 (2-dehydro-3-deoxyphosphooctonate aldolase [Striga asiatica])

HSP 1 Score: 58.5 bits (140), Expect = 3.8e-05
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 51 MAVMTSSKLLFIRTMSAASMAMSVPAPIAIPTSAATSAGES 92
          MAV TSS+LLFI TMSAAS+A SVPAPIA+PTSAATSAGES
Sbjct: 1  MAVATSSRLLFISTMSAASIATSVPAPIAMPTSAATSAGES 41

BLAST of CmoCh03G002350.1 vs. NCBI nr
Match: OQA64375.1 (hypothetical protein BWY37_02069 [Firmicutes bacterium ADurb.Bin262])

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 43  IGIPRRLSMAVMTSSKLLFIRTMSAASMAMSVPAPIAIPTSAATSAGESLIPSPTIATV 102
           + + R  S AV  S + LFI T+SA SMAMSVPAP+A+PTSA   AG SL+PSP I TV
Sbjct: 3   LSVARLSSTAVTASRRSLFINTISADSMAMSVPAPMAMPTSARARAGASLMPSPIIPTV 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A9PTB86.5e-1190.38Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A803LQK51.1e-0572.50Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A5A7Q0B81.8e-0585.372-dehydro-3-deoxyphosphooctonate aldolase OS=Striga asiatica OX=4170 GN=STAS_148... [more]
A0A1V5TC752.0e-0459.32Uncharacterized protein OS=Firmicutes bacterium ADurb.Bin262 OX=1852887 GN=BWY37... [more]
Match NameE-valueIdentityDescription
GER38346.13.8e-0585.372-dehydro-3-deoxyphosphooctonate aldolase [Striga asiatica][more]
OQA64375.14.2e-0459.32hypothetical protein BWY37_02069 [Firmicutes bacterium ADurb.Bin262][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh03G002350CmoCh03G002350gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh03G002350.1:exon:5073CmoCh03G002350.1:exon:5073exon
CmoCh03G002350.1:exon:5072CmoCh03G002350.1:exon:5072exon
CmoCh03G002350.1:exon:5071CmoCh03G002350.1:exon:5071exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh03G002350.1:cdsCmoCh03G002350.1:cdsCDS
CmoCh03G002350.1:cdsCmoCh03G002350.1:cds_2CDS
CmoCh03G002350.1:cdsCmoCh03G002350.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh03G002350.1CmoCh03G002350.1-proteinpolypeptide