CmoCh02G006630.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G006630.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 4178463 .. 4183948 (-)
Sequence length486
RNA-Seq ExpressionCmoCh02G006630.1
SyntenyCmoCh02G006630.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGATGCAAACACGACGATTCCCTGCATAAATCTGAAAGGTTAGTCCATGCTATTTTGCTTTCTCTGTGTGTTCTAACATGATTTGACTTTTATTCTGCTTGTGAACTTGTTTATTAATTGCATGACAACGTAAAAGAGTTTTTAGCATTAGTCTTGAAAAATATAAGGTTTGTTATTTCTCCATTTAGACCATCCTTCATTTTCTTAGATTAGCATTCCCATTCTTCATTCAACAGAGACTTAAATAGCCAAGTTTTGTTGATAGAGATAACTTGCCACTGGTTGCATTCGATTCTTTCCTATAGGATAATGATACTGATTTGGCTTTCTCATAGCATTAGCTGTAAACCATAATATAAACCCTGATAAAAGATCCAACAGGGAATCTAGTGTTGAAGCTATAACTGCAAGTGATCTGCTCTCAACTGAAGCATATACTTTCGCGACGAAGATCACCATGTTAGCTATGTTGGATGCATATATTGCCAGTCTCTCACGGTACGCCTCTTGCTTCTCTTCATCCTGATATATAAGAAACTAGGTGAATGTGTCTGATAAGAAGTTGTGACTGTTAGAGAGTGAAATACAAGACAGACCTCAGTTAAAGGTCCAGGTACAATACCCAGTTCATTGTAGGAGTCAACCTCATTGAATCCTTTTAGAAGACTTTTCTGCCTTTCATAGTACGTAGCAACCTTTCTCTGTCTCTCTAGCAGCAAGATAAAAACGCTCATTAGTTTCACCTCCTAAACTCAAGGTTCTCAACAGTAGAAGAACTATTTATTCAAGAACTAGAAATTGATAATAAAGCTTACTCCATGACTTCCAGTAATAAACAATGCCATGATGAGATCTCTTGTTTGTAGCAGGCAAGCAGAACTCGTCCATGTTCAGTCGCCACGAGGGAATCTTCGTCACCATTCCATCTGTTCCAGCAGCCACACCCTCCGGCGACAAAAGCTCTGTTCTGAAAGAATCCGTTCTGGGATTATCCGTCATTTTTGTTCTTAACCCGACTAAGAATCTGGTTAAAAGGAAGAAGTCCTCTGTTACTTGAAACTAGAGAGACCATTATAAAGGGGAAGACAATAGTGCAGTGTTGCTGAGGAAGTTGGAGACGTTGAATATAATAGGGGAAAGTGGATTCAGTAAACAAGGGCATGGAAAGGGCCGGAAGGGGTGATTTGAAGGTTTTGCATTAAATAATTGAAATACATGGGGTTTTGGGAATTGCTTTGTAGGATTTCACGTGCTTTCTTGCAAGCATAACAGAATCATCGATGCTTTTTTTCAACTTCGGCATATAATGATTGTTTTCAAATCTTTGTGAAGGTTTCTTTGGTGTTTAATGTATGGAAGGAAGACTGGTACAAAGCTTCAACGTCCAATCTTTTTTTGTTAACGGTGGTGAAACCACAAGGGTTTGCCGGTTCTTTGTACATAAATCTTTGTGATGGTTTTGCGCAGCGTCAGTAGTTCTCCCGCTTCCAGGATCAATTCTCCCATTTGTCGCTCATAAAAAGAACTAGCAGATCATTACCCTGATGATTTAATAAATGGTTTTGAGATTAACAACCGCATCCTTTGTGTAGTGCATACGGCTCCACAATTGAATTCGTTTTACCTTCCATTGAAGGAATAGAAAATAGAGGATCTATTAGACCTATCCAATAACTACCTTTTTTTTTAGTAATTTAAAAATAAATACTATGGTGGGTCCGTTGCTTTATTATTTCGATTGTTATTCAGCAATCCCAAAGTTTATTTTGTAGTCTTTCATAATAGAAATATTGTTAAGAGTCTTCAAAAACAAAAAAGTTTGTGACGCTGAAAGAGGCCTCGATAAATCAGCTAAAATCGACTTTCGGGTCGGTCATTTTCGACATTCAATCTTTTTTCGGCATAAATTCAATGCTATCTAAGATTTCTCGTTATCTATTCTATTTCTTTTCAAAGTAAACAAATAAATATTTTTCTTAAGTTTTACTTCCTTGAAGGTACTAAGTATTCCTACATTTTAAAAAACTGTACAAAATCTGAACACATTAGTTCGAATAAGGCTCATTCAAAGTCAATTAAATTTAAGCACATACATCTATTTTTATAATACAAAGAAGCATATCCCACTTTAAAAAAGGAATAATACGATAGTTCATAGTATAAATATACTTGGGAAATTTCATGGAAACTCCTTCCAAGAAACTTTATAAGAATTCATGGAAATTAAACTGGGGAGCAGTTGAGGGAAAACAGAAATTGAAAACTCAACAGTGCTGCTACCACTGGGAGACACACTTTGATCCTGATTTGTGCTGTTAAATCTTCTTATGATTTAATCAAACAGTGGGAACAAAATAGTCGTTCAAATACAATGAAAGTTGAAATACAGGATAAATAGTGGAAATGTTCTTCCATAGTTACCTGCATCGAATCTGCCGGGTTCCAGATATGCTTAACTGGAAGAATGAACTCTTACATGTCAAATATTCCTTTATTTCATGCTCGAATAACTAATTTCCTACATAAACAACTACTGAATGAATCCATTCCAAGAAAAAATAGACGCCTATCTCACTTCAATCAAAAACTGCTGGGGGCTTTGTCGATGACAAGTCTCGTCAATCATTTAGTTCAAGGCTGAAACCAATGCCATGTGCTCAATAAGATCCAGTACTCGGTTGCTGAAAAGACGAACATCGGTTATTCATGACCATCCCCAGAATTATGTAAGTAAAGAGCATCATAGGTCATCACGATGTGAAGATGTGTGAAATAGAGGGAGAGAATACCTGTATCCCCATTCATTGTCGTACCAAGTCACCAGCTTGACAAATGAGGTGCTGAGACCTATTCCAGCCTTTGCATCAAATATACTAGACCTGCAACAATTAAATCATGTGATTCAGACTCCCAATTGAAAAATACTAACCATATTTGATATGTTACTTGCTCTACTTTCCCCACATGATTTGAGTCAGAATATGCTGAAAAAAGTCGTACCTCGAGTCACCGAGAAAATCAGTAGAGACAACATCCTCATCGGTATATCCAAGAATGCCTTGCAATGGACCTTCGGATGCATACCTTTAAAAGAGTTGAAAGAGTTGCGAACTCGTCATCAATCATATTAAATACTTTAGCTGTACAGGGAAAAACTTAACGAAAGGCACACTGGTTGGGTGCAAGTCATACTTTACTGCTGCCTTTACATCTTCATATGTAGCACTCTTTTCAAGTCGGCAGGTTAAGTCCACAACAGATACATTGGGTGTTGGGACACGGAAAGCCATTCCAGTAAGTTTTCCGTTTAGCTCTGGAAGAACTTTACCAACAGCCTGCAGTTATTTTTTTAAAAAAATTCCATAACCTTTTCAATTGATTAAAATAAAACCATAAAGATTTATCAAATTTTTATGCCACATACCTTGGCAGCACCAGTAGAGCTAGGAATTATATTTTGTGCAGCACCACGGCCTCCTCTCCAATCCTTCATTGAAGGGCCATCAACAGTCTTTTGTGTTGCTGAAATAAAATGAAAGAACACAATTTACACACATGAGTAAAGAGTTTGAGAGAGTGAGAGAATGAAAGACCTGTCGTTGCATGCACTGTTGTCATTAGACCTTCAACAATACCAAATTCCTCATGAACGACCTACATGAGATAGCACACAATTCAAATCAGGTACACGGGAACTATATCCCTGTATTAAGATGGTGAGAAAATCAGATATATGTCTACTCTAAACTCCAGTATAAAAAAATTCAAGAAACACTCCAAAACACTCAAAAATATACCTTTGCAAGAGGTGCAAGACAATTGGTAGTACAACTTGCGTTGGAAACAATATTCATTGTCGGCTTGTAAGTTTTTTCATTAACACCAACAACAAACATAGGTGCATCAGCTGATGGAGCTGAGATTACAACTTTCTTAGCACCACCCTGCAGGGAAAAGTTATACATTGTTTAACTTGGTTTTCAAAGACATCAAGTGGAAGAGTAAAGCGATAAATTAAAACAGGAGCGATAGATCCATCAGCAATCAACAGAACCTTCAAGTGTGCTGAAGCCTTGTCTTTTGTAGTGAAAACTCCAGAGGACTCGACAACATATTCAGCTCCATAATCACCCCAAGGGATATCTGCAGGCTCCCTGAGCATAAAGAATCACAAGAATCAGTCTCTAGAGGAGCTTTGTTACTATAGAATCAACTGAAAGCATACAGAACGAAGTCGCAAGAATTTTACAGGTCAAACTACTCAGTACACTAATTATAACTTTATAATATTCTAGAGAAGCAAATATTCAGTTTTTACCTTTTGCTCACAACTTTGATCTGCTTCCCATTAATTTCCAAAGTTGAATCACTAAGGACCTTAATGGTTCCATCAAAAACACCATGAGTAGAATCGTATTTGAACATGTAAGCCTGGATAACAGAATCCAAATGGATCATTACGTGAACTAATGCATACCATGTACTTAAAAACAAATTTGATCTATCCAATGTGCTTAGAATCCAAAAGGATCATTGAATAAACATAATGCATACCATGTACTTAGCATCAACAAATGGATCATTAACTGCTACAACATCAATATCATCCCTTGAGGTTGCAATTCGTAAAACCAGTCTTCCAATTCGTCCAAAACCTGTATAGTGAGTCATCACAAAAATTTCTAGACTGTCACGAACGTTTCTAGAAATCAACAAGCACTAGAACTCTATCGATAAAAGAGGGAAAAGAAGTAGGCCAATCATATAGAAAGCAGAAAAACTATATAACATATGCAATAGATTATCTCTTCCAGAATCATAATACAAAAGATAACAATTATAGACACTTTTCTTGAAATGGTGAATAATCAATTCGTGAAGTGTGGAATATTTCCCGACACAATGAAACAATTAAAAATAAGACTTGATATAAATTCCTATTACATTGAAGCCTAGCTCTGAAAGAGCTACATGCAGGCTTCTTGTGCACTGTTGGCATGTAACCTCACTCAATCACGCACATCAATGAGAACCATAGATCTTTCTTTTGTTATTCTGATACTATTTTGCATTTTCACAAGCAGAAGGGTCGTTCTTTGAAGTCTAAGCTTAATATTCCTGTTTATTTAACTTTTCCCATTTCGTTATTTGTTATTAAGTGACAACTTATATGTGTGCAACATTCTTTGTCCAATCGTGTATCACTTGCCCACACCAATACTGTTTAGGCTCCGGAGATATTTTCTAGCCTTACAACAAAGACTAAGAACCATACAGATATAACTCCTAGATAGGAAGTAAAGTCAAGACACTATGAAACTGACCATCAAACAAACATCATTGAGACTGTAGTTATTGAAAGAGTGCACGATAGAAGGCAGTTGGCTGAATATAACACTTATTACTATCAGCAATCAAATTCACATATCTTACTAACAGAAGGTGAATCTACCGAATGGAATAGTCACAGAAGTACACTAA

mRNA sequence

ATGACGGATGCAAACACGACGATTCCCTGCATAAATCTGAAAGGCAAGCAGAACTCGTCCATGTTCAGTCGCCACGAGGGAATCTTCGTCACCATTCCATCTGTTCCAGCAGCCACACCCTCCGGCGACAAAAGCTCTGTTCTGAAAGAATCCGTTCTGGGATTATCCGTCATTTTTGTTCTTAACCCGACTAAGAATCTGGTTTCTTTGGTGTTTAATGTATGGAAGGAAGACTGGTACAAAGCTTCAACGTCCAATCTTTTTTTGTTAACGGTGGTGAAACCACAAGGGTTTGCCGGGAAAAACTTAACGAAAGGCACACTGGTTGGGTGCAAGTCATACTTTACTGCTGCCTTTACATCTTCATATGTAGCACTCTTTTCAAGTCGGCAGGTTAAGTCCACAACAGATACATTGGGTGTTGGGACACGGAAAGCCATTCCAAAGGTGAATCTACCGAATGGAATAGTCACAGAAGTACACTAA

Coding sequence (CDS)

ATGACGGATGCAAACACGACGATTCCCTGCATAAATCTGAAAGGCAAGCAGAACTCGTCCATGTTCAGTCGCCACGAGGGAATCTTCGTCACCATTCCATCTGTTCCAGCAGCCACACCCTCCGGCGACAAAAGCTCTGTTCTGAAAGAATCCGTTCTGGGATTATCCGTCATTTTTGTTCTTAACCCGACTAAGAATCTGGTTTCTTTGGTGTTTAATGTATGGAAGGAAGACTGGTACAAAGCTTCAACGTCCAATCTTTTTTTGTTAACGGTGGTGAAACCACAAGGGTTTGCCGGGAAAAACTTAACGAAAGGCACACTGGTTGGGTGCAAGTCATACTTTACTGCTGCCTTTACATCTTCATATGTAGCACTCTTTTCAAGTCGGCAGGTTAAGTCCACAACAGATACATTGGGTGTTGGGACACGGAAAGCCATTCCAAAGGTGAATCTACCGAATGGAATAGTCACAGAAGTACACTAA

Protein sequence

MTDANTTIPCINLKGKQNSSMFSRHEGIFVTIPSVPAATPSGDKSSVLKESVLGLSVIFVLNPTKNLVSLVFNVWKEDWYKASTSNLFLLTVVKPQGFAGKNLTKGTLVGCKSYFTAAFTSSYVALFSSRQVKSTTDTLGVGTRKAIPKVNLPNGIVTEVH
Homology
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BLAST of CmoCh02G006630.1 vs. NCBI nr
Match: KAG7035309.1 (hypothetical protein SDJN02_02104, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-15
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 15  GKQNSSMFSRHEGIFVTIPSVPAATPSGDKSSVLKESVLGLSVIFVLNPTKNLV 69
           GKQNSSMFSRHEGIFVTIPSVPAATPSGDKS     SVLGLSVIFVLNPTKNLV
Sbjct: 82  GKQNSSMFSRHEGIFVTIPSVPAATPSGDKS-----SVLGLSVIFVLNPTKNLV 130

The following BLAST results are available for this feature:
BLAST of CmoCh02G006630.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G006630.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G006630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035309.13.7e-1590.74hypothetical protein SDJN02_02104, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh02G006630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh02G006630CmoCh02G006630gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G006630.1:exon:981CmoCh02G006630.1:exon:981exon
CmoCh02G006630.1:exon:980CmoCh02G006630.1:exon:980exon
CmoCh02G006630.1:exon:979CmoCh02G006630.1:exon:979exon
CmoCh02G006630.1:exon:978CmoCh02G006630.1:exon:978exon
CmoCh02G006630.1:exon:977CmoCh02G006630.1:exon:977exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G006630.1:cdsCmoCh02G006630.1:cds_5CDS
CmoCh02G006630.1:cdsCmoCh02G006630.1:cds_4CDS
CmoCh02G006630.1:cdsCmoCh02G006630.1:cds_3CDS
CmoCh02G006630.1:cdsCmoCh02G006630.1:cds_2CDS
CmoCh02G006630.1:cdsCmoCh02G006630.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh02G006630.1CmoCh02G006630.1-proteinpolypeptide