CmoCh02G005970.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G005970.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 3655300 .. 3655809 (+)
Sequence length422
RNA-Seq ExpressionCmoCh02G005970.1
SyntenyCmoCh02G005970.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAAATCAAATTACACCGAGCAAAGACGGATTGCTTGCAAAAACATGGTTCCGAAGGCATCAACACTTTCATGCGTTCGCCTCCTTCGACTACTGCCCCTCCTCTTTCTTTTCATTCTCCTCGTCACAACTCCAGGTAACTCCTGTCAAGGATATTTAGTTTTGAATTACGGTTTATCATAGGTATCATATTTTTTAATACTTTATTGTGCATGGTGTTTTAGGGTCTTTCGGTGCACCGAGTTTGCTTGAAAAGACGAGGCATAGCCAGGAGGATCAGCTGGCCACCATAAGCCATGGAGGAGCCTTGGAAAACGCCTATGACTTGGGGGCGATGGATTATACTCCAGCTGGGCCAAGCCCTCCAGTCCATAATAACCCAAACTAATAAGTGAAAATTTAAATATTGTAATTTGGATACACAGAAATTATGTATGTGTGTGTATATATATGTATGTGGAAGGAGGGTTGTAGTATGGTTTTTAAATGATATGATATTTTCTACCATTA

mRNA sequence

ATAAAATCAAATTACACCGAGCAAAGACGGATTGCTTGCAAAAACATGGTTCCGAAGGCATCAACACTTTCATGCGTTCGCCTCCTTCGACTACTGCCCCTCCTCTTTCTTTTCATTCTCCTCGTCACAACTCCAGGGTCTTTCGGTGCACCGAGTTTGCTTGAAAAGACGAGGCATAGCCAGGAGGATCAGCTGGCCACCATAAGCCATGGAGGAGCCTTGGAAAACGCCTATGACTTGGGGGCGATGGATTATACTCCAGCTGGGCCAAGCCCTCCAGTCCATAATAACCCAAACTAATAAGTGAAAATTTAAATATTGTAATTTGGATACACAGAAATTATGTATGTGTGTGTATATATATGTATGTGGAAGGAGGGTTGTAGTATGGTTTTTAAATGATATGATATTTTCTACCATTA

Coding sequence (CDS)

ATGGTTCCGAAGGCATCAACACTTTCATGCGTTCGCCTCCTTCGACTACTGCCCCTCCTCTTTCTTTTCATTCTCCTCGTCACAACTCCAGGGTCTTTCGGTGCACCGAGTTTGCTTGAAAAGACGAGGCATAGCCAGGAGGATCAGCTGGCCACCATAAGCCATGGAGGAGCCTTGGAAAACGCCTATGACTTGGGGGCGATGGATTATACTCCAGCTGGGCCAAGCCCTCCAGTCCATAATAACCCAAACTAA

Protein sequence

MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSQEDQLATISHGGALENAYDLGAMDYTPAGPSPPVHNNPN
Homology
[Close]
BLAST of CmoCh02G005970.1 vs. ExPASy TrEMBL
Match: A0A0A0LM46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.9e-04
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 1  MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSQEDQLATISHGGALE 60
          ++ K    SC  LL+LL  +FLF LL+TT GS  A SL+E    + +D     +H G + 
Sbjct: 2  VLKKTLAFSCNNLLQLLAFIFLFFLLITTTGS-SARSLVEGRSRNDDDPYVK-NHSGVIG 61

Query: 61 NAYDLGAMDYTPAGPSPPVHN 82
          N  DL  MDYTPA  + P+HN
Sbjct: 62 N--DLVTMDYTPARKNHPIHN 78

[Close]
BLAST of CmoCh02G005970.1 vs. NCBI nr
Match: KAG6605284.1 (hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSQEDQLATISHGGALE 60
          MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHS+EDQLATISHGGALE
Sbjct: 1  MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSEEDQLATISHGGALE 60

Query: 61 NAYDLGAMDYTPAGPSPPVHNNPN 85
          NAYDLGAMDYTPAGPSPPVHNNPN
Sbjct: 61 NAYDLGAMDYTPAGPSPPVHNNPN 84

[Close]
BLAST of CmoCh02G005970.1 vs. NCBI nr
Match: KAG6605285.1 (hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 0 

Query: 1  MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSQEDQLATISHGGALE 60
          MV KAS LS  RLLRLL LLFLFILL+TT GS G  +LLEKT HS+ED L  I  GG LE
Sbjct: 1  MVMKASKLSFYRLLRLLSLLFLFILLITTTGSLGGRTLLEKTGHSEEDPL-DIVRGGGLE 60

Query: 61 NAYDLGAMDYTPAGPSPPVHN 82
          NA DL  MDYTPA  + P+HN
Sbjct: 61 NANDLVTMDYTPATKNRPIHN 80

[Close]
BLAST of CmoCh02G005970.1 vs. NCBI nr
Match: KAG6605283.1 (hypothetical protein SDJN03_02600, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 4.5e-12
Identity = 52/81 (64.20%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 1  MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSQEDQLATISHGGALE 60
          MV  AST     LL  L LLFLFILLVT P S GA  LLEKT H +EDQL  ISHGGALE
Sbjct: 1  MVSGAST-----LLLQLALLFLFILLVTIPRSLGARGLLEKTGHGEEDQL-VISHGGALE 60

Query: 61 NAYDLGAMDYTPAGPSPPVHN 82
          NA    AMDYTP+  + PVHN
Sbjct: 61 NADGFLAMDYTPSKANRPVHN 75

[Close]
BLAST of CmoCh02G005970.1 vs. NCBI nr
Match: KGN62099.1 (hypothetical protein Csa_006414 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-04
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 1  MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSQEDQLATISHGGALE 60
          ++ K    SC  LL+LL  +FLF LL+TT GS  A SL+E    + +D     +H G + 
Sbjct: 2  VLKKTLAFSCNNLLQLLAFIFLFFLLITTTGS-SARSLVEGRSRNDDDPYVK-NHSGVIG 61

Query: 61 NAYDLGAMDYTPAGPSPPVHN 82
          N  DL  MDYTPA  + P+HN
Sbjct: 62 N--DLVTMDYTPARKNHPIHN 78

The following BLAST results are available for this feature:
BLAST of CmoCh02G005970.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G005970.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM462.9e-0443.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1[more]
BLAST of CmoCh02G005970.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605284.11.1e-3798.81hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605285.11.5e-1566.67hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605283.14.5e-1264.20hypothetical protein SDJN03_02600, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62099.15.9e-0443.21hypothetical protein Csa_006414 [Cucumis sativus][more]
BLAST of CmoCh02G005970.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh02G005970CmoCh02G005970gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G005970.1:exon:1617CmoCh02G005970.1:exon:1617exon
CmoCh02G005970.1:exon:1618CmoCh02G005970.1:exon:1618exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G005970.1:five_prime_utrCmoCh02G005970.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G005970.1:cdsCmoCh02G005970.1:cdsCDS
CmoCh02G005970.1:cdsCmoCh02G005970.1:cds_2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G005970.1:three_prime_utrCmoCh02G005970.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh02G005970.1CmoCh02G005970.1-proteinpolypeptide