CmoCh02G004300.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G004300.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 2249060 .. 2249520 (-)
Sequence length228
RNA-Seq ExpressionCmoCh02G004300.1
SyntenyCmoCh02G004300.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTCTCCATTTTTGCAGGAAAACGTGGAAGCCCAGCTGGAACATATCCAGTGCATTACAATGCCAATATGTTTAAGTTTTTCTCAAAGACTGATGACAACGAGGTGCGTTGAATACACAACGCCCTGTTGTTGAAGATTATCCTTGTTTAGTCCATGCAGCTTTTTTTTCTCAAAGCAGGAAGTTGAAGAGTGGTTGAACTTTGAAACTCCAGTGCTTTTAGCCTCCCATCTGTACATTCTTCTCTACATGGAAAAGTTAAAAAGTTGGTTTTCTTATCTGTTGAGCCATGAACTCTCTACTCTTTTACTCAAAAAGTTGAAGAAACTGAATGTAGAAATCTAGCAGAAGAGAAAAAGAAAACGCCGTTGCCGGGGATCAAACCCGAGTCACCCGCGTGACAGATGGGAATACTTATCACTATACTACAACGACTCGTTGTTTGGAGGATATATAG

mRNA sequence

ATGACGTTCTCCATTTTTGCAGGAAAACGTGGAAGCCCAGCTGGAACATATCCAGTGCATTACAATGCCAATATGTTTAAGTTTTTCTCAAAGACTGATGACAACGAGAAATCTAGCAGAAGAGAAAAAGAAAACGCCGTTGCCGGGGATCAAACCCGAGTCACCCGCGTGACAGATGGGAATACTTATCACTATACTACAACGACTCGTTGTTTGGAGGATATATAG

Coding sequence (CDS)

ATGACGTTCTCCATTTTTGCAGGAAAACGTGGAAGCCCAGCTGGAACATATCCAGTGCATTACAATGCCAATATGTTTAAGTTTTTCTCAAAGACTGATGACAACGAGAAATCTAGCAGAAGAGAAAAAGAAAACGCCGTTGCCGGGGATCAAACCCGAGTCACCCGCGTGACAGATGGGAATACTTATCACTATACTACAACGACTCGTTGTTTGGAGGATATATAG

Protein sequence

MTFSIFAGKRGSPAGTYPVHYNANMFKFFSKTDDNEKSSRREKENAVAGDQTRVTRVTDGNTYHYTTTTRCLEDI
Homology
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BLAST of CmoCh02G004300.1 vs. NCBI nr
Match: KAG6605112.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 8   GKRGSPAGTYPVHYNANMFKFFSKTDDNE 37
           GKRGSPAGT PVHYNANMFKFFSKTDDNE
Sbjct: 733 GKRGSPAGTNPVHYNANMFKFFSKTDDNE 761

The following BLAST results are available for this feature:
BLAST of CmoCh02G004300.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G004300.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G004300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605112.11.1e-0696.55B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma ... [more]
BLAST of CmoCh02G004300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh02G004300CmoCh02G004300gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G004300.1:exon:2449CmoCh02G004300.1:exon:2449exon
CmoCh02G004300.1:exon:2448CmoCh02G004300.1:exon:2448exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G004300.1:cdsCmoCh02G004300.1:cds_2CDS
CmoCh02G004300.1:cdsCmoCh02G004300.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh02G004300.1CmoCh02G004300.1-proteinpolypeptide