CmoCh02G001650.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G001650.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 797578 .. 797934 (+)
Sequence length216
RNA-Seq ExpressionCmoCh02G001650.1
SyntenyCmoCh02G001650.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTGCACCCTCTCAATACGCTCTGCAATAACTCCTTTCTTGCCTCTTCTTCCTCCATCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTGAAACTCATCTTCTTCCTTCAAGAACCCTAATTTTTTCACTTCAAGATCGCGCCTTTTTCCACACCCACCAAGCTATATCACTCTTACAACACAAAACTTGGAGGATAATCATCAAAAGGTAAAAACCCAGATCAGATCTGAAGTAAAGCCTTCAAATTGGTAAAAACCCAGATCAAAACCCTTCAAATACCCTAAAAATTTCTTAATTTTGATCCAAATTTTGTTCCTTTTTCTTCTTTTACAATTGTTTTTGTTGCAGATAG

mRNA sequence

ATGCCATTGCACCCTCTCAATACGCTCTGCAATAACTCCTTTCTTGCCTCTTCTTCCTCCATCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTGAAACTCATCTTCTTCCTTCAAGAACCCTAATTTTTTCACTTCAAGATCGCGCCTTTTTCCACACCCACCAAGCTATATCACTCTTACAACACAAAACTTGGAGGATAATCATCAAAAGATAG

Coding sequence (CDS)

ATGCCATTGCACCCTCTCAATACGCTCTGCAATAACTCCTTTCTTGCCTCTTCTTCCTCCATCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTGAAACTCATCTTCTTCCTTCAAGAACCCTAATTTTTTCACTTCAAGATCGCGCCTTTTTCCACACCCACCAAGCTATATCACTCTTACAACACAAAACTTGGAGGATAATCATCAAAAGATAG

Protein sequence

MPLHPLNTLCNNSFLASSSSISSSSSSSSSSETHLLPSRTLIFSLQDRAFFHTHQAISLLQHKTWRIIIKR
Homology
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BLAST of CmoCh02G001650.1 vs. NCBI nr
Match: KAG6604853.1 (hypothetical protein SDJN03_02170, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 3.7e-23
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0 

Query: 1  MPLHPLNTLCNNSFLASSSSISSSSSSSSSSETHLLPSRTLIFSLQDRAFFHTHQAISLL 60
          MPLHPLNTLCNNSFLASSSSI S SSSSSSSET LLPSRTLIFSLQDR+FFHTHQ ISLL
Sbjct: 1  MPLHPLNTLCNNSFLASSSSI-SISSSSSSSETRLLPSRTLIFSLQDRSFFHTHQVISLL 60

Query: 61 QHKTWRIIIKR 72
          QHKTWRIIIKR
Sbjct: 61 QHKTWRIIIKR 70

The following BLAST results are available for this feature:
BLAST of CmoCh02G001650.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G001650.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G001650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604853.13.7e-2392.96hypothetical protein SDJN03_02170, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh02G001650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh02G001650CmoCh02G001650gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G001650.1:exon:4667CmoCh02G001650.1:exon:4667exon
CmoCh02G001650.1:exon:4668CmoCh02G001650.1:exon:4668exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G001650.1:cdsCmoCh02G001650.1:cdsCDS
CmoCh02G001650.1:cdsCmoCh02G001650.1:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh02G001650.1CmoCh02G001650.1-proteinpolypeptide