CmoCh02G000290.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G000290.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	auxin-responsive protein SAUR71-like
Location	Cmo_Chr02: 166455 .. 166898 (+)
Sequence length	444
RNA-Seq Expression	CmoCh02G000290.1
Synteny	CmoCh02G000290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCACCTCATCCGCCGTCTCTCCCGCGTCGCCGACTCCTCCCAGTCCCACTACTGCCTTCTCCACTCCCATTCCGCCGCCGCCGCCCGCCGCCCCGGCCGCGCCCACTCCTTCCGTGCCGCCGCCGCCAACAAATTCCGCCGCTCCAGATCCGAAGGCGCCGTCCCGGTCCCCCAGGGTCACGTCCCGGTGTACGTCGGCGACGAGATGGAGCGGTTCGCCGTGAGCGCGGAACTACTGAACCACCCGGTTTTCGTTACTCTACTAGAGAAATCCGCTCAGGAATACGGTTACGAACAGAAAGGCGTCCTTCGAATACCCTGCCACGTGCTGGTGTTCGAGCGGGTCCTAGAGGCCATCCGAATCGGCGACCAGGAGTCACGTGACCTCCAGAGTATTCTCTCGTCTCTCTCCAATCCGGATTTTCTTTCTTTTTCTTGA

mRNA sequence

ATGAAGCACCTCATCCGCCGTCTCTCCCGCGTCGCCGACTCCTCCCAGTCCCACTACTGCCTTCTCCACTCCCATTCCGCCGCCGCCGCCCGCCGCCCCGGCCGCGCCCACTCCTTCCGTGCCGCCGCCGCCAACAAATTCCGCCGCTCCAGATCCGAAGGCGCCGTCCCGGTCCCCCAGGGTCACGTCCCGGTGTACGTCGGCGACGAGATGGAGCGGTTCGCCGTGAGCGCGGAACTACTGAACCACCCGGTTTTCGTTACTCTACTAGAGAAATCCGCTCAGGAATACGGTTACGAACAGAAAGGCGTCCTTCGAATACCCTGCCACGTGCTGGTGTTCGAGCGGGTCCTAGAGGCCATCCGAATCGGCGACCAGGAGTCACGTGACCTCCAGAGTATTCTCTCGTCTCTCTCCAATCCGGATTTTCTTTCTTTTTCTTGA

Coding sequence (CDS)

ATGAAGCACCTCATCCGCCGTCTCTCCCGCGTCGCCGACTCCTCCCAGTCCCACTACTGCCTTCTCCACTCCCATTCCGCCGCCGCCGCCCGCCGCCCCGGCCGCGCCCACTCCTTCCGTGCCGCCGCCGCCAACAAATTCCGCCGCTCCAGATCCGAAGGCGCCGTCCCGGTCCCCCAGGGTCACGTCCCGGTGTACGTCGGCGACGAGATGGAGCGGTTCGCCGTGAGCGCGGAACTACTGAACCACCCGGTTTTCGTTACTCTACTAGAGAAATCCGCTCAGGAATACGGTTACGAACAGAAAGGCGTCCTTCGAATACCCTGCCACGTGCTGGTGTTCGAGCGGGTCCTAGAGGCCATCCGAATCGGCGACCAGGAGTCACGTGACCTCCAGAGTATTCTCTCGTCTCTCTCCAATCCGGATTTTCTTTCTTTTTCTTGA

Protein sequence

MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQGHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEAIRIGDQESRDLQSILSSLSNPDFLSFS

Homology

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BLAST of CmoCh02G000290.1 vs. ExPASy Swiss-Prot
Match: Q9LTV3 (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-34
Identity = 83/135 (61.48%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADS+Q  Y LL S S   +R   R+ SF  ++    RRS+ + +  VP+
Sbjct: 1   MKQLIRRLSRVADSAQ--YSLLRSDSQRPSR---RSESFLRSSVT--RRSKKQTS-SVPE 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERF VSAELLNHPVF+ LL +SAQEYGYEQKGVL+IPCHVLVFER++E+
Sbjct: 61  GHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIMES 120

Query: 121 IRIGDQESRDLQSIL 136
           +R+G     D+Q ++
Sbjct: 121 LRLGLPVPIDVQDLI 127

[Close]

BLAST of CmoCh02G000290.1 vs. ExPASy Swiss-Prot
Match: Q9SA49 (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.2e-32
Identity = 82/145 (56.55%), Postives = 101/145 (69.66%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MKHLIRRLSRVADSS S + +  S S+   R   R H    A    +    +     VP 
Sbjct: 1   MKHLIRRLSRVADSS-SEFSIRRSTSSFRNR---RGHHRLHAPPPPWSICPARRVNTVPA 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVG+EMERF VSAEL+NHP+FV LL +SAQEYGY QKGVL IPCHV+VFERV+E 
Sbjct: 61  GHVPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFERVVET 120

Query: 121 IRIGDQE-SRDLQSILSSLSNPDFL 145
           +R+G  E S DL+++++SL + D L
Sbjct: 121 LRLGGFEGSGDLENLVASLLSGDEL 141

[Close]

BLAST of CmoCh02G000290.1 vs. ExPASy Swiss-Prot
Match: Q9SGU2 (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-31
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADS+Q  Y LL S S     +  +  S+                  VP+
Sbjct: 1   MKQLIRRLSRVADSTQ--YSLLRSESQRGRTKKEKHKSW------------------VPE 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVG EMERF V+AELLNHPVFV LL++SAQEYGYEQ+GVLRIPCHVLVFER+LE+
Sbjct: 61  GHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERILES 104

Query: 121 IRIG 125
           +R+G
Sbjct: 121 LRLG 104

[Close]

BLAST of CmoCh02G000290.1 vs. ExPASy Swiss-Prot
Match: O64538 (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSR+ADSS          S    R     H     +++ F   R+  A  VP 
Sbjct: 1   MKPLIRRLSRIADSS----------SCNRNRSGDIHHPTSTYSSSVFLVKRATVASSVPS 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPV VG++ ERF VSAELLNHPVFV LL +SAQEYGY QKGVL IPC+V VFE+V+E+
Sbjct: 61  GHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVVES 120

Query: 121 IRIGDQESRDLQSILSSLSNPD 143
           +R G  +  D   +++SLS  D
Sbjct: 121 LRSGIAD--DTSELIASLSGED 130

[Close]

BLAST of CmoCh02G000290.1 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-10
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 58  VPQGHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERV 117
           VP+GH PVYVG+   R+ V    L HP F +LL+++ +E+G++    L IPC  LVF+ +
Sbjct: 43  VPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTL 102

Query: 118 LEAIR 123
              IR
Sbjct: 103 TSMIR 107

[Close]

BLAST of CmoCh02G000290.1 vs. ExPASy TrEMBL
Match: A0A6J1G7V1 (auxin-responsive protein SAUR71-like OS=Cucurbita moschata OX=3662 GN=LOC111451539 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.0e-74
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ
Sbjct: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA
Sbjct: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120

Query: 121 IRIGDQESRDLQSILSSLSNPDFLSFS 148
           IRIGDQESRDLQSILSSLSNPDFLSFS
Sbjct: 121 IRIGDQESRDLQSILSSLSNPDFLSFS 147

[Close]

BLAST of CmoCh02G000290.1 vs. ExPASy TrEMBL
Match: A0A6J1I1P2 (auxin-responsive protein SAUR71-like OS=Cucurbita maxima OX=3661 GN=LOC111469701 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.4e-68
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ
Sbjct: 1   MKQLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERF+VSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA
Sbjct: 61  GHVPVYVGDEMERFSVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120

Query: 121 IRIGDQESRDLQSILSSLS 140
           IRIGDQESRDLQSILSSLS
Sbjct: 121 IRIGDQESRDLQSILSSLS 139

[Close]

BLAST of CmoCh02G000290.1 vs. ExPASy TrEMBL
Match: A0A6J1JC90 (auxin-responsive protein SAUR71-like OS=Cucurbita maxima OX=3661 GN=LOC111483728 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.2e-60
Identity = 128/145 (88.28%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADSSQS YCLL + S+AAARRPGRAHSFRAAAA+KFRRSR EGA+PVPQ
Sbjct: 1   MKQLIRRLSRVADSSQSSYCLLRTDSSAAARRPGRAHSFRAAAASKFRRSRPEGAMPVPQ 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA
Sbjct: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120

Query: 121 IRIGDQESRDLQSILSSLSNPDFLS 146
           IRIGD++S  LQ +LSSLS  DFLS
Sbjct: 121 IRIGDEDSIYLQDLLSSLSG-DFLS 144

[Close]

BLAST of CmoCh02G000290.1 vs. ExPASy TrEMBL
Match: A0A6J1FV00 (auxin-responsive protein SAUR71-like OS=Cucurbita moschata OX=3662 GN=LOC111448690 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.9e-60
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADSSQS YCLL + S+AAARRPGRAHSFRAAAA+KFRRSR EGA+PVPQ
Sbjct: 1   MKQLIRRLSRVADSSQSSYCLLRTDSSAAARRPGRAHSFRAAAASKFRRSRPEGAMPVPQ 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA
Sbjct: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120

Query: 121 IRIGDQESRDLQSILSSLSNPDFLS 146
           IRIGD++S  LQ +LSSLS  D+LS
Sbjct: 121 IRIGDEDSIYLQDLLSSLSG-DYLS 144

[Close]

BLAST of CmoCh02G000290.1 vs. ExPASy TrEMBL
Match: A0A5A7UFB2 (Auxin-responsive protein SAUR71 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004690 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 125/144 (86.81%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADSSQSHYCLL +      +RP RAHSFRAAAANKFRRSRS+GAVPVPQ
Sbjct: 1   MKQLIRRLSRVADSSQSHYCLLRTPD----QRPARAHSFRAAAANKFRRSRSDGAVPVPQ 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA
Sbjct: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120

Query: 121 IRIGDQESRDLQSILSSLSNPDFL 145
           IRIGD +SRDL  +LSSLS  DFL
Sbjct: 121 IRIGDPDSRDLHDLLSSLSG-DFL 139

[Close]

BLAST of CmoCh02G000290.1 vs. NCBI nr
Match: XP_022947780.1 (auxin-responsive protein SAUR71-like [Cucurbita moschata] >KAG7034850.1 Auxin-responsive protein SAUR72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.6 bits (732), Expect = 1.2e-73
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ
Sbjct: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA
Sbjct: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120

Query: 121 IRIGDQESRDLQSILSSLSNPDFLSFS 148
           IRIGDQESRDLQSILSSLSNPDFLSFS
Sbjct: 121 IRIGDQESRDLQSILSSLSNPDFLSFS 147

[Close]

BLAST of CmoCh02G000290.1 vs. NCBI nr
Match: XP_022970846.1 (auxin-responsive protein SAUR71-like [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 1.7e-67
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ
Sbjct: 1   MKQLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERF+VSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA
Sbjct: 61  GHVPVYVGDEMERFSVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120

Query: 121 IRIGDQESRDLQSILSSLS 140
           IRIGDQESRDLQSILSSLS
Sbjct: 121 IRIGDQESRDLQSILSSLS 139

[Close]

BLAST of CmoCh02G000290.1 vs. NCBI nr
Match: XP_023532512.1 (auxin-responsive protein SAUR71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHS-AAAARRPGRAHSFRAAAANKFRRSRSEGAVPVP 60
           MKHLIRRLSRVADSSQSHYCLLHSHS AAAARRPGRAHSFRAAAANKFRRSRSEGAVPVP
Sbjct: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVP 60

Query: 61  QGHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLE 120
           QGHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLE
Sbjct: 61  QGHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLE 120

Query: 121 AIRIGDQESRDLQSILSSLS 140
           AIRIGDQESRDLQSILSSLS
Sbjct: 121 AIRIGDQESRDLQSILSSLS 140

[Close]

BLAST of CmoCh02G000290.1 vs. NCBI nr
Match: XP_038901919.1 (auxin-responsive protein SAUR71 [Benincasa hispida])

HSP 1 Score: 248.1 bits (632), Expect = 4.9e-62
Identity = 130/144 (90.28%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADSSQSHYCLL    A AA+RPGRAHSFRAAAANKFRRSRSEGAVPVPQ
Sbjct: 1   MKQLIRRLSRVADSSQSHYCLLRPTDAVAAQRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA
Sbjct: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120

Query: 121 IRIGDQESRDLQSILSSLSNPDFL 145
           IRIGD +SRDL  +LSSLS  DFL
Sbjct: 121 IRIGDHDSRDLNDLLSSLSG-DFL 143

[Close]

BLAST of CmoCh02G000290.1 vs. NCBI nr
Match: XP_022985780.1 (auxin-responsive protein SAUR71-like [Cucurbita maxima] >XP_023512929.1 auxin-responsive protein SAUR71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.5 bits (615), Expect = 4.6e-60
Identity = 128/145 (88.28%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADSSQS YCLL + S+AAARRPGRAHSFRAAAA+KFRRSR EGA+PVPQ
Sbjct: 1   MKQLIRRLSRVADSSQSSYCLLRTDSSAAARRPGRAHSFRAAAASKFRRSRPEGAMPVPQ 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA
Sbjct: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120

Query: 121 IRIGDQESRDLQSILSSLSNPDFLS 146
           IRIGD++S  LQ +LSSLS  DFLS
Sbjct: 121 IRIGDEDSIYLQDLLSSLSG-DFLS 144

[Close]

BLAST of CmoCh02G000290.1 vs. TAIR 10
Match: AT3G12830.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 147.5 bits (371), Expect = 8.3e-36
Identity = 83/135 (61.48%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADS+Q  Y LL S S   +R   R+ SF  ++    RRS+ + +  VP+
Sbjct: 1   MKQLIRRLSRVADSAQ--YSLLRSDSQRPSR---RSESFLRSSVT--RRSKKQTS-SVPE 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVGDEMERF VSAELLNHPVF+ LL +SAQEYGYEQKGVL+IPCHVLVFER++E+
Sbjct: 61  GHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIMES 120

Query: 121 IRIGDQESRDLQSIL 136
           +R+G     D+Q ++
Sbjct: 121 LRLGLPVPIDVQDLI 127

[Close]

BLAST of CmoCh02G000290.1 vs. TAIR 10
Match: AT1G16510.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-33
Identity = 82/145 (56.55%), Postives = 101/145 (69.66%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MKHLIRRLSRVADSS S + +  S S+   R   R H    A    +    +     VP 
Sbjct: 1   MKHLIRRLSRVADSS-SEFSIRRSTSSFRNR---RGHHRLHAPPPPWSICPARRVNTVPA 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVG+EMERF VSAEL+NHP+FV LL +SAQEYGY QKGVL IPCHV+VFERV+E 
Sbjct: 61  GHVPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFERVVET 120

Query: 121 IRIGDQE-SRDLQSILSSLSNPDFL 145
           +R+G  E S DL+++++SL + D L
Sbjct: 121 LRLGGFEGSGDLENLVASLLSGDEL 141

[Close]

BLAST of CmoCh02G000290.1 vs. TAIR 10
Match: AT1G56150.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-32
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSRVADS+Q  Y LL S S     +  +  S+                  VP+
Sbjct: 1   MKQLIRRLSRVADSTQ--YSLLRSESQRGRTKKEKHKSW------------------VPE 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPVYVG EMERF V+AELLNHPVFV LL++SAQEYGYEQ+GVLRIPCHVLVFER+LE+
Sbjct: 61  GHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERILES 104

Query: 121 IRIG 125
           +R+G
Sbjct: 121 LRLG 104

[Close]

BLAST of CmoCh02G000290.1 vs. TAIR 10
Match: AT1G79130.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 120.9 bits (302), Expect = 8.4e-28
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 1   MKHLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSEGAVPVPQ 60
           MK LIRRLSR+ADSS          S    R     H     +++ F   R+  A  VP 
Sbjct: 1   MKPLIRRLSRIADSS----------SCNRNRSGDIHHPTSTYSSSVFLVKRATVASSVPS 60

Query: 61  GHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQKGVLRIPCHVLVFERVLEA 120
           GHVPV VG++ ERF VSAELLNHPVFV LL +SAQEYGY QKGVL IPC+V VFE+V+E+
Sbjct: 61  GHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVVES 120

Query: 121 IRIGDQESRDLQSILSSLSNPD 143
           +R G  +  D   +++SLS  D
Sbjct: 121 LRSGIAD--DTSELIASLSGED 130

[Close]

BLAST of CmoCh02G000290.1 vs. TAIR 10
Match: AT5G10990.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 45  NKFRRSRSEGAVP--VPQGHVPVYVGDEMERFAVSAELLNHPVFVTLLEKSAQEYGYEQK 104
           NK R S    +VP  VP GHV VYVG    RF V A  LNHP+ + LL K+ +E+G+  +
Sbjct: 26  NKARMSSVRRSVPSDVPSGHVAVYVGRSCRRFVVLATYLNHPILMNLLVKAEEEFGFANQ 85

Query: 105 GVLRIPCHVLVFERVLEAIRIGDQESR 130
           G L IPC   VFE   E+IR   + SR
Sbjct: 86  GPLVIPCEESVFE---ESIRFITRSSR 109

The following BLAST results are available for this feature:

BLAST of CmoCh02G000290.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTV3	1.2e-34	61.48	Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 S...	[more]
Q9SA49	4.2e-32	56.55	Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 S...	[more]
Q9SGU2	2.7e-31	60.48	Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 S...	[more]
O64538	1.2e-26	51.41	Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 S...	[more]
O65695	5.9e-10	43.08	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]

BLAST of CmoCh02G000290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7V1	6.0e-74	100.00	auxin-responsive protein SAUR71-like OS=Cucurbita moschata OX=3662 GN=LOC1114515...	[more]
A0A6J1I1P2	8.4e-68	98.56	auxin-responsive protein SAUR71-like OS=Cucurbita maxima OX=3661 GN=LOC111469701...	[more]
A0A6J1JC90	2.2e-60	88.28	auxin-responsive protein SAUR71-like OS=Cucurbita maxima OX=3661 GN=LOC111483728...	[more]
A0A6J1FV00	4.9e-60	87.59	auxin-responsive protein SAUR71-like OS=Cucurbita moschata OX=3662 GN=LOC1114486...	[more]
A0A5A7UFB2	1.2e-58	86.81	Auxin-responsive protein SAUR71 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of CmoCh02G000290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947780.1	1.2e-73	100.00	auxin-responsive protein SAUR71-like [Cucurbita moschata] >KAG7034850.1 Auxin-re...	[more]
XP_022970846.1	1.7e-67	98.56	auxin-responsive protein SAUR71-like [Cucurbita maxima]	[more]
XP_023532512.1	2.3e-67	99.29	auxin-responsive protein SAUR71-like [Cucurbita pepo subsp. pepo]	[more]
XP_038901919.1	4.9e-62	90.28	auxin-responsive protein SAUR71 [Benincasa hispida]	[more]
XP_022985780.1	4.6e-60	88.28	auxin-responsive protein SAUR71-like [Cucurbita maxima] >XP_023512929.1 auxin-re...	[more]

BLAST of CmoCh02G000290.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12830.1	8.3e-36	61.48	SAUR-like auxin-responsive protein family	[more]
AT1G16510.1	3.0e-33	56.55	SAUR-like auxin-responsive protein family	[more]
AT1G56150.1	1.9e-32	60.48	SAUR-like auxin-responsive protein family	[more]
AT1G79130.1	8.4e-28	51.41	SAUR-like auxin-responsive protein family	[more]
AT5G10990.1	2.6e-13	47.13	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 38..120 e-value: 7.8E-29 score: 99.7
None	No IPR available	PANTHER	PTHR31374:SF165	AUXIN-RESPONSIVE PROTEIN SAUR72	coord: 2..140
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 2..140

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G000290	CmoCh02G000290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G000290.1:exon:4930	CmoCh02G000290.1:exon:4930	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G000290.1:cds	CmoCh02G000290.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G000290.1	CmoCh02G000290.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin