CmoCh02G000120.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G000120.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 87992 .. 91241 (+)
Sequence length504
RNA-Seq ExpressionCmoCh02G000120.1
SyntenyCmoCh02G000120.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATACTCCTCTTCTCCTTCTACTTCTGGACTCCCATTAGAGGATGGTTACTGATCTTTGACCAATATTTCCTCCTAGTCTTCGTTTGTCTCCCCAAATATGTGTTTGGACACTTTTTCTACATTGTTAAAAAATAGCTGGTTTACCAACCAAAACCAAATGGTCAGTTTTTTATGCTGATTTTGTTCTAAAACTAACACCAACCAACCAATGTGCTACCTTTCCTCTTTTTTTTGGAAAAGCTACCCTTCTTTGTTGGTCTACTTGAAAAGTCAGGTTTTTATTCCCCCACCCCCCAAAAAATGCTGTTTGGCGTTTTTCTACTTCGTTCTTTTTCTTTGTTCTTTTTTCTTTTTTCTCTTTTGTGAGGGTGGGTAGGGGGAAGGGGTGCATGGATGTTATAAAGGGACACTGCACTCATTCACCATAGATGGTTTAAGACAGACAGGCAGTGCTCCTAACTTCCTTTATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATATGCCTTTTACCTGCCTATTGGTAGCCGTAACATGTTCAGCTGGTATACGAATTTCTAGGGTGGGGACATTTTGTGGGCTTTCACCGTTCTTATCTATCTGGGATTGTTCATGTTCCTTCCACAACTTTATTAGTTCTTGCATGCACTCGCCAACTTTATAAACCACAGACGAGACTTCAGGTTTTCCTGAAAAAAGGTTTTGCATTTATACAGGCAATAAGATCTAGTAGATATGACATTCTTATCTCAAAAATTTTACTAGTCAATATCAAGCATCATGCATCAGACACAGAGAACTATCAAGACAAGATGGGTTTCATGAAGCTGCTTTTTTCCCCCTTAAAGATAAATAATGCCATGTTTCTGTTTTTCTCTTTGGAAATAAAGCCATAAATCTGTTTTTATAATACATAAAATGCACTGAGGTGAAATTATATCTATGAGAAGAGAAGTTGTTTCTTGTTCAAAAAAACATCAAAGAAATGTGTTTCTAATTTTCTTTTTTTTTTAAAAAATCCTTATTCACAAATAGGACCTGTACTTCCATCTCTTATCGTTCCTCAAGAGTTGTTAAGAACTGCTCTAAATCGAAAATGCAAGAGCAATAAGTCCAAGTTAAAAAGGTACTTCTACGTCAACCAGGTGATAAAGAATGATAAACAAGTAGACTGCAAAGCTTATGGAGAGAGACTGCAAACTAGAATAATATATTTCGCAAAAGCTATCCACGAGGTAGCATGATTGCAGCAGTCACAGTTGAGAAGAATGTTACACCAAGTGGAACAGAATAATAAGACAGCATACCTTGTAATCTGCAAGATACAGGAAGAGGATCAGGACGTGGCTCAATAGTCAATCATTCTTAAATTAAAAAAGAAATATTTCTTCGCTTGACATTAAGGATAGCAAAAAAGTTTAAAAGCATTTTTCTGAACCAAGATTAGCAGTACTATGAAGAACATAGGTTAGTCAGCAAGGAAAAATTAAAGCTGAACATAAAATCATACGACATACCCTTCATTATCTTGAGCACGAGACCTAAACCGAGGTTCTCTATTTGCTACTTGAGGGCTTCCCCTTGAACGTTGCATCCTCCTCCGATGCTGAACGCCATAATTATAAACTTCTCTCTCTCTGTCTACAGTCCCTTCAACATCTGCACATCCCTCATCTGACTCTTTTTCATGACATCTACTACGCTTTTCTGGTCGATCCCCTTCAATGTCTGTATCCCTCTCTTTCTTCCTGTCTCTACCCTCTCTATCAGCATTTTTCCAGTTATCAAAATCCTTTAACTTTTTCTGATCTGGAATTGGATTGTCCTGCTCTAACATTCTCGCAGACACTTCACCTGACTCCTTTTCAAGGTGTGAAGTCTCCTTATCCATTCCATTCCATGATTCTCTCTTCTGATGGTCCTTATCCCTTTCACGAGGCCTTTCCTTGTCTTTTGAGGTATCTTTCCGGTCTCTCTCCCACCTTTCTGCATCTCTCTCTTCCTTAGACAAGTCTTTGGGCTCAACATTGTTGTTTGTTGCTTGAGTACTGCTCCTATGATCATTTCTTTCCTTATCCTTATCTCCCCAATCCCGCTGCTTTGTATCTTTCCTTTTCCTGTCCTTCTCCTTAAATTTATCCTCACCTTTTGAATCTATTTTGTTCTCGCCAACAGCCTCCCTTGTTTCAACATAATCTTTCTCATCAGTGGTCGGGGCTTCTTTTACAGCCTCAGCTGCACTCTGTGAACTGGTGCGTGAAACATGCCAGGATTCCGTGCTTCCAACTGGAGCTTCAGGATATCTCTTCCCCCTGTGATAATCTTTTGATTCTTTCCAGTTCAAGTGACTGGCTGCTGATCCATAAATCTCTTTTTCTGACTTCAAGTCGCCCTTGTAATCGTTATAACTATCTCTATCATATTTCATTTCCTTAATATCCTCCAATCTGCTTTCATATCTCATTTCCTTCTCCAACTTCACAGCTTGAGAATCCCTCCTTTCATCACCAAACAGCTCTCGAGCATCCACTCTTGCATCTCGGTTCTCAAACCTGTTATCCCCACCGTCCTTGGAGTCCCGCAGCTCCAGCCTGCTTTCCGAAGCAACAGAATGATCTACATGAGGATCATTAGAGGACGAGGGCATTCGAAAAATCGAGTGCAGGGGGGATCTTTTATCTCCATCACGGGATTCAGTGCGGGGTAGCTTCGACATTGGGGTGTCCTGACCCATCTCATAGGAAGGGCGATACTGCATTGGAATTGAAGAAGAGAGCTTGCGATAAGGGCTGGAATCATCGTGGGGATATTTGGAAGATGAAGAGTGCCCCCCATCGTCGTGGGACCTCTTCGGAGCACCACTCATACCGACGAGTCAGTGAGTAA

mRNA sequence

ATGGGATACTCCTCTTCTCCTTCTACTTCTGGACTCCCATTAGAGGATGGACCTGTACTTCCATCTCTTATCGTTCCTCAAGAGTTGTTAAGAACTGCTCTAAATCGAAAATGCAAGAGCAATAAGTCCAAGTTAAAAAGCTTGAGAATCCCTCCTTTCATCACCAAACAGCTCTCGAGCATCCACTCTTGCATCTCGGTTCTCAAACCTGTTATCCCCACCGTCCTTGGAGTCCCGCAGCTCCAGCCTGCTTTCCGAAGCAACAGAATGATCTACATGAGGATCATTAGAGGACGAGGGCATTCGAAAAATCGATGCGGGGTAGCTTCGACATTGGGGTGTCCTGACCCATCTCATAGGAAGGGCGATACTGCATTGGAATTGAAGAAGAGAGCTTGCGATAAGGGCTGGAATCATCGTGGGGATATTTGGAAGATGAAGAGTGCCCCCCATCGTCGTGGGACCTCTTCGGAGCACCACTCATACCGACGAGTCAGTGAGTAA

Coding sequence (CDS)

ATGGGATACTCCTCTTCTCCTTCTACTTCTGGACTCCCATTAGAGGATGGACCTGTACTTCCATCTCTTATCGTTCCTCAAGAGTTGTTAAGAACTGCTCTAAATCGAAAATGCAAGAGCAATAAGTCCAAGTTAAAAAGCTTGAGAATCCCTCCTTTCATCACCAAACAGCTCTCGAGCATCCACTCTTGCATCTCGGTTCTCAAACCTGTTATCCCCACCGTCCTTGGAGTCCCGCAGCTCCAGCCTGCTTTCCGAAGCAACAGAATGATCTACATGAGGATCATTAGAGGACGAGGGCATTCGAAAAATCGATGCGGGGTAGCTTCGACATTGGGGTGTCCTGACCCATCTCATAGGAAGGGCGATACTGCATTGGAATTGAAGAAGAGAGCTTGCGATAAGGGCTGGAATCATCGTGGGGATATTTGGAAGATGAAGAGTGCCCCCCATCGTCGTGGGACCTCTTCGGAGCACCACTCATACCGACGAGTCAGTGAGTAA

Protein sequence

MGYSSSPSTSGLPLEDGPVLPSLIVPQELLRTALNRKCKSNKSKLKSLRIPPFITKQLSSIHSCISVLKPVIPTVLGVPQLQPAFRSNRMIYMRIIRGRGHSKNRCGVASTLGCPDPSHRKGDTALELKKRACDKGWNHRGDIWKMKSAPHRRGTSSEHHSYRRVSE
Homology
The following BLAST results are available for this feature:
BLAST of CmoCh02G000120.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G000120.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G000120.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G000120.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..167

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh02G000120CmoCh02G000120gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G000120.1:exon:4948CmoCh02G000120.1:exon:4948exon
CmoCh02G000120.1:exon:4947CmoCh02G000120.1:exon:4947exon
CmoCh02G000120.1:exon:4946CmoCh02G000120.1:exon:4946exon
CmoCh02G000120.1:exon:4945CmoCh02G000120.1:exon:4945exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G000120.1:cdsCmoCh02G000120.1:cdsCDS
CmoCh02G000120.1:cdsCmoCh02G000120.1:cds_2CDS
CmoCh02G000120.1:cdsCmoCh02G000120.1:cds_3CDS
CmoCh02G000120.1:cdsCmoCh02G000120.1:cds_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh02G000120.1CmoCh02G000120.1-proteinpolypeptide