CmoCh01G003630.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G003630.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 1764434 .. 1767100 (+)
Sequence length	805
RNA-Seq Expression	CmoCh01G003630.1
Synteny	CmoCh01G003630.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAGAACGAACTCCTGACTTCATCTATCACTGGTACAGAAATCTACCATTTCGGAGCAATGGCTCTAAATCTCCATTGTTGCTGTTTATCAGCTCGTTTCATTTCTTTCCATTCAGAAGTTAGAGATTTTCGTTCCGGTTGTCTGAATCGCACTTCGAAACTGAGTGCAAATTCGCTGAAATTCTCTAGAATCCGTAGCTCTGCGAATTCTAACGATCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTTGATCCTTCCCTTAATCATCCTCGAGCTTGCCGATTTCATACTGCTCATTTTGGAGGTAACGCCCTAAGTTGTTTTTAGTTCTTCCGATTTCATTTCCGTTTTTCGTTTCTGTGATGTACAATTTGAGTGTGTTAAAAGCTTTAGTTTCTTCTCAGCGTTTGATTTGATTATGATATGTAGTCACCGTTTAGTCAGTTGTACATTGTGCTTCTTGATGGAAACTGGAAATTGCATACTCCAATGTATGATTTTGTTTGATTTTGTTTGCATTCCAAATAATCCTACCCTTAATAGTCATTCCATCTGTCCAATTCTTTGGCTTCACCAAGAGTTTGCTCTCATTCAGGACACAACTCCTCTAAACACCGCGTATTCGATAAAGCTCCACCACGAATCACATTGTGGATTACACAACGTAGACCATTCCTTAGCATACCCTTAGCGATCCTCCCCTCAAACACACTTGTTTGACATTTGAGGATTCATCCACAATCCTACATGACTATGTCTATTTGAGACTCATCACTTTGTTAGGTATTTGAGAATTTTACTAGACATGGCTAACTCAGGGGCATGGTTCTTATACCACTTATCATGGACATAATCTTTCTATCGTGTGATGCCATGATATACACTCGCTCATGGCTATTCTTGACGTGAACTCAAACCCCAACTCTTTCACCCTTTTTGTGGCTTCTTCGGACCTTAGGTGAGGTTTCGTTGTCCTCAATCAAGTTTTATTTCATGTTCAACGCAGCTTTCTTCGGACCTTATGTGATACTTTGTTCGCATTCCCAACCTTCTCTTCAATTGCGTTTTGGTACTTATTTCATAGTTTAAGTCCCTAGTTTTTACATACAAAATGCCATATTAGTCCTTAAATTTTTAAAAAGAACAATTTTGGTCCTTGTCAGGACCAAAAGGATTACTTTTTAAAATTTAGAGACTAAAATAGACATTTTAAAAGTCGAGAATCGTGTTGAAATAATAGGAACCAAAATGTAAACATCCAAAGTTAGTTGTGTTTTGTTCAACTTCATAGCCATTTTGCGTTTCCATTTGTACAATTTAAATGCGTTTATTTAAATCTTTGGTTGATGCTCAGCTCTTGATTTATCCATGATTTGTAATACTTGTGTTAGTTGTAATCAAGGTGCTGCTTGATGGACACTCTAAATTGAAGGTTTATAACCTATTCTCATCAATTTACTTTTGGTACTTCTTTTACTTCAAATACTTGTAGATATCTGTTCATGATGCAAACAAATTAAACTTATGTTGTGTTAGGTCTCCGTTACATTATATACAAAAATATCATGATCAGGGGTTAAATAGTTGTTCTTACGAAGTTAGAAGTAGAATATATGAAAGTTTAGGAACTTCCTAAACTGAAATAAGTTAAAATTCCCGAAAAAAAAATAGGTTTTGGATCAAAATTCTAGCTCTTTACCACTGATGACTTTTTTGGACTCTGCAAGTAAAAGCCATCTGCTTTCCCTTTTGGTTGAGTTGCTTTAAACAATAGCTTTAATCGCTTGGATTTTGAAAGCATTTACAACAACGAAACAAAGAACAAAAAACAATTAGGTATCAAACATGGCCTTAGAAATTGTGAATAATTCAAACCTTGTGTATAACCAAATTTATGCTGACCGATATCGATTGGATTATCGAAAGACTGAGATTGACTTTGAAACTCAAAAATGTTCTGTTGAATCACTCAAAACGAGAAGGTTTGAATAATTTTGAGGATTGGAAATAGACTACAATTCAATTTACTACTTCAAATCATTATTGATTTCTTTCTGAAAGTCCAAGTTCCAACTTCTCGAGTCACTACTTGATTCCTACCTTGATTTGCACGTATTTTCTTCTCAAAACCATAATCTATTCCTGTGTTATTCTTTCTTTATACAGGTGAAACAAAGCGTAAGTTTGAAAGTGTACACACAGGAGGAACAATGGACACTCCAGACTCTGGCAAAGTCTTACAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTTGATCCGGGATGTACCGCTGCTCCACACTCGTCCTACGACGACGTTTAATACCATAGATCGAACCGACAACCTTTCTCAAGGTCCCCTTCTTTCATGTAAGTCTTTAATTTCCTTTTCTTCATGAAATCATGTGTACATATTCATATCCTATCTGAAATGTTGGGTTGGGTAACTTTTTTTGGTCATCTTTGAGTTGGAAATTAACGGAATATAATTTTCCAAGTTATTAGTTTCTATTTATGTCTTACTATAATGTAAAATATATCATTCTCACATATACCTTTTAAAACCGTCCTTCTCAACTCTGTCTAAATTCGTTCTTTTTGATACAACAAATGGGGTATGAGAATTTGAACCTCCGACCTCAAAAGAATAAATAC

mRNA sequence

ATTAGAACGAACTCCTGACTTCATCTATCACTGGTACAGAAATCTACCATTTCGGAGCAATGGCTCTAAATCTCCATTGTTGCTGTTTATCAGCTCGTTTCATTTCTTTCCATTCAGAAGTTAGAGATTTTCGTTCCGGTTGTCTGAATCGCACTTCGAAACTGAGTGCAAATTCGCTGAAATTCTCTAGAATCCGTAGCTCTGCGAATTCTAACGATCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTTGATCCTTCCCTTAATCATCCTCGAGCTTGCCGATTTCATACTGCTCATTTTGGAGGTGAAACAAAGCGTAAGTTTGAAAGTGTACACACAGGAGGAACAATGGACACTCCAGACTCTGGCAAAGTCTTACAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTTGATCCGGGATGTACCGCTGCTCCACACTCGTCCTACGACGACGTTTAATACCATAGATCGAACCGACAACCTTTCTCAAGGTCCCCTTCTTTCATGTAAGTCTTTAATTTCCTTTTCTTCATGAAATCATGTGTACATATTCATATCCTATCTGAAATGTTGGGTTGGGTAACTTTTTTTGGTCATCTTTGAGTTGGAAATTAACGGAATATAATTTTCCAAGTTATTAGTTTCTATTTATGTCTTACTATAATGTAAAATATATCATTCTCACATATACCTTTTAAAACCGTCCTTCTCAACTCTGTCTAAATTCGTTCTTTTTGATACAACAAATGGGGTATGAGAATTTGAACCTCCGACCTCAAAAGAATAAATAC

Coding sequence (CDS)

ATGGCTCTAAATCTCCATTGTTGCTGTTTATCAGCTCGTTTCATTTCTTTCCATTCAGAAGTTAGAGATTTTCGTTCCGGTTGTCTGAATCGCACTTCGAAACTGAGTGCAAATTCGCTGAAATTCTCTAGAATCCGTAGCTCTGCGAATTCTAACGATCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTTGATCCTTCCCTTAATCATCCTCGAGCTTGCCGATTTCATACTGCTCATTTTGGAGGTGAAACAAAGCGTAAGTTTGAAAGTGTACACACAGGAGGAACAATGGACACTCCAGACTCTGGCAAAGTCTTACAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTTGATCCGGGATGTACCGCTGCTCCACACTCGTCCTACGACGACGTTTAA

Protein sequence

MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSEDPFDPGCTAAPHSSYDDV

Homology

[Close]

BLAST of CmoCh01G003630.1 vs. ExPASy TrEMBL
Match: A0A6J1G9P5 (uncharacterized protein LOC111452227 OS=Cucurbita moschata OX=3662 GN=LOC111452227 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 4.6e-76
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60
           MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC
Sbjct: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120

Query: 121 PFDPGCTAAPHSSYDDV 138
           PFDPGCTAAPHSSYDDV
Sbjct: 121 PFDPGCTAAPHSSYDDV 137

[Close]

BLAST of CmoCh01G003630.1 vs. ExPASy TrEMBL
Match: A0A6J1K626 (uncharacterized protein LOC111492645 OS=Cucurbita maxima OX=3661 GN=LOC111492645 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 132/137 (96.35%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60
           MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANS K  RIRSSANS++QLTLRTC
Sbjct: 12  MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSPKIYRIRSSANSSNQLTLRTC 71

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED
Sbjct: 72  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 131

Query: 121 PFDPGCTAAPHSSYDDV 138
           PFDPGCTAAPHSSYDDV
Sbjct: 132 PFDPGCTAAPHSSYDDV 148

[Close]

BLAST of CmoCh01G003630.1 vs. ExPASy TrEMBL
Match: A0A0A0L8V5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185090 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58
Identity = 112/136 (82.35%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60
           MA NLHC   SA FIS HS+    RS  LNRTSKLS+NS K   IR SANSN+QLTLRTC
Sbjct: 1   MAPNLHCYHSSAPFISLHSKFLVLRSDALNRTSKLSSNSPKILTIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHT+HFGGETKRKFESVH+GGTMDTPDSGKV QYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTSHFGGETKRKFESVHSGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTAAPHSSYDD 137
           PFDPGCTA+PHSSYDD
Sbjct: 121 PFDPGCTASPHSSYDD 136

[Close]

BLAST of CmoCh01G003630.1 vs. ExPASy TrEMBL
Match: A0A6J1CNX1 (uncharacterized protein LOC111013199 OS=Momordica charantia OX=3673 GN=LOC111013199 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.6e-58
Identity = 115/140 (82.14%), Postives = 119/140 (85.00%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISF----HSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLT 60
           MALNLHC C S RF+       SEV   RS  LNR SKLSA+S KF  IR+SANSN+QLT
Sbjct: 1   MALNLHCYCSSTRFLPLTPKAPSEV--LRSDRLNRASKLSADSTKFHTIRNSANSNNQLT 60

Query: 61  LRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCC 120
           LRTCRNCK QFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKV QYWHCC
Sbjct: 61  LRTCRNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVFQYWHCC 120

Query: 121 GSEDPFDPGCTAAPHSSYDD 137
           GSEDPFDPGCTAAPHSSYDD
Sbjct: 121 GSEDPFDPGCTAAPHSSYDD 138

[Close]

BLAST of CmoCh01G003630.1 vs. ExPASy TrEMBL
Match: A0A1S3C5F2 (uncharacterized protein LOC103496857 OS=Cucumis melo OX=3656 GN=LOC103496857 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.7e-54
Identity = 108/136 (79.41%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60
           MA NLHC   S  FIS HS     RS     TSK  +NSLKF  IR SANSN+QLTLRTC
Sbjct: 1   MAPNLHCYHSSPPFISLHSYPLVLRSHAPYPTSKHCSNSLKFLSIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120
           RNCK+QFDPSLNHPRACRFHTAHFGGETKRKFESVH GGTMDTPDSGKV QYWHCCGSED
Sbjct: 61  RNCKSQFDPSLNHPRACRFHTAHFGGETKRKFESVHLGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTAAPHSSYDD 137
           PFDPGCTA+PHSSYDD
Sbjct: 121 PFDPGCTASPHSSYDD 136

[Close]

BLAST of CmoCh01G003630.1 vs. NCBI nr
Match: XP_022948602.1 (uncharacterized protein LOC111452227 [Cucurbita moschata])

HSP 1 Score: 293.5 bits (750), Expect = 9.4e-76
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60
           MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC
Sbjct: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120

Query: 121 PFDPGCTAAPHSSYDDV 138
           PFDPGCTAAPHSSYDDV
Sbjct: 121 PFDPGCTAAPHSSYDDV 137

[Close]

BLAST of CmoCh01G003630.1 vs. NCBI nr
Match: KAG6606995.1 (hypothetical protein SDJN03_00337, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291.2 bits (744), Expect = 4.7e-75
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60
           MALNLHCCCLSARFIS HSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC
Sbjct: 1   MALNLHCCCLSARFISIHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120

Query: 121 PFDPGCTAAPHSSYDDV 138
           PFDPGCTAAPHSSYDDV
Sbjct: 121 PFDPGCTAAPHSSYDDV 137

[Close]

BLAST of CmoCh01G003630.1 vs. NCBI nr
Match: KAG7036697.1 (hypothetical protein SDJN02_00317 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.0 bits (741), Expect = 1.0e-74
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60
           MALNLHCCCLSARFIS HSEVRDFRSGCLNRTSKLSANSLKFSRIRSS+NSNDQLTLRTC
Sbjct: 1   MALNLHCCCLSARFISIHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSSNSNDQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120

Query: 121 PFDPGCTAAPHSSYDDV 138
           PFDPGCTAAPHSSYDDV
Sbjct: 121 PFDPGCTAAPHSSYDDV 137

[Close]

BLAST of CmoCh01G003630.1 vs. NCBI nr
Match: XP_022997797.1 (uncharacterized protein LOC111492645 [Cucurbita maxima])

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-72
Identity = 132/137 (96.35%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60
           MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANS K  RIRSSANS++QLTLRTC
Sbjct: 12  MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSPKIYRIRSSANSSNQLTLRTC 71

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED
Sbjct: 72  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 131

Query: 121 PFDPGCTAAPHSSYDDV 138
           PFDPGCTAAPHSSYDDV
Sbjct: 132 PFDPGCTAAPHSSYDDV 148

[Close]

BLAST of CmoCh01G003630.1 vs. NCBI nr
Match: XP_023522633.1 (uncharacterized protein LOC111786627 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 131/137 (95.62%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSLKFSRIRSSANSNDQLTLRTC 60
           MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANS K   IRSSANS++QLTLRTC
Sbjct: 1   MALNLHCCCLSARFISFHSEVRDFRSGCLNRTSKLSANSPKIYTIRSSANSSNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGTMDTPDSGKVLQYWHCCGSED 120

Query: 121 PFDPGCTAAPHSSYDDV 138
           PFDPGCTAAPHSSYDDV
Sbjct: 121 PFDPGCTAAPHSSYDDV 137

[Close]

BLAST of CmoCh01G003630.1 vs. TAIR 10
Match: AT5G38060.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-42
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 31  RTSKLSANSLKFSRIRSSANSNDQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKR 90
           +T KL  NS +F    ++++S+   TLRTC+NCK QFDP LN+PRACRFHTAHFGGETKR
Sbjct: 31  KTPKL--NSRQFFSQCTASSSDGPKTLRTCKNCKTQFDPLLNNPRACRFHTAHFGGETKR 90

Query: 91  KFESVHTGGTMDTPDSGKVLQYWHCCGSEDPFDPGCTAAPHSSYDD 137
           KFESV+TGGTMDTP+SGKVLQYWHCCGSEDPFD GCTA+PH++YDD
Sbjct: 91  KFESVYTGGTMDTPNSGKVLQYWHCCGSEDPFDSGCTASPHTTYDD 134

[Close]

BLAST of CmoCh01G003630.1 vs. TAIR 10
Match: AT5G38060.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-33
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 31  RTSKLSANSLKFSRIRSSANSNDQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKR 90
           +T KL  NS +F    ++++S+   TLRTC+NCK QFDP LN+PRACRFHTAHFG     
Sbjct: 31  KTPKL--NSRQFFSQCTASSSDGPKTLRTCKNCKTQFDPLLNNPRACRFHTAHFG----- 90

Query: 91  KFESVHTGGTMDTPDSGKVLQYWHCCGSEDPFDPGCTAAPHSSYDD 137
                  GGTMDTP+SGKVLQYWHCCGSEDPFD GCTA+PH++YDD
Sbjct: 91  -------GGTMDTPNSGKVLQYWHCCGSEDPFDSGCTASPHTTYDD 122

[Close]

BLAST of CmoCh01G003630.1 vs. TAIR 10
Match: AT1G65000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38060.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08
Identity = 28/83 (33.73%), Postives = 40/83 (48.19%), Query Frame = 0


Query: 58  RTCRNCKAQFDPSLNHPRACRFHTAHF----GGETKRKFESVHTGGTMDTPDSGKVLQYW 117
           + C+ CK  +    N   +CRFH + F      + KR +E       +   D     +++
Sbjct: 8   KLCQRCKQSYTDLSNETSSCRFHPSFFVCRRHDDQKRYYE-------LKPDDPPYAAKFY 67

Query: 118 HCCGSEDPFDPGCTAAPHSSYDD 137
            CCG+EDP  PGC   PH SYDD
Sbjct: 68  DCCGAEDPNAPGCVTNPHISYDD 83

The following BLAST results are available for this feature:

BLAST of CmoCh01G003630.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003630.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9P5	4.6e-76	100.00	uncharacterized protein LOC111452227 OS=Cucurbita moschata OX=3662 GN=LOC1114522...	[more]
A0A6J1K626	1.1e-72	96.35	uncharacterized protein LOC111492645 OS=Cucurbita maxima OX=3661 GN=LOC111492645...	[more]
A0A0A0L8V5	2.5e-58	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185090 PE=4 SV=1	[more]
A0A6J1CNX1	5.6e-58	82.14	uncharacterized protein LOC111013199 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A1S3C5F2	1.7e-54	79.41	uncharacterized protein LOC103496857 OS=Cucumis melo OX=3656 GN=LOC103496857 PE=...	[more]

BLAST of CmoCh01G003630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948602.1	9.4e-76	100.00	uncharacterized protein LOC111452227 [Cucurbita moschata]	[more]
KAG6606995.1	4.7e-75	99.27	hypothetical protein SDJN03_00337, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036697.1	1.0e-74	98.54	hypothetical protein SDJN02_00317 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022997797.1	2.2e-72	96.35	uncharacterized protein LOC111492645 [Cucurbita maxima]	[more]
XP_023522633.1	1.1e-71	95.62	uncharacterized protein LOC111786627 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh01G003630.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38060.1	1.1e-42	73.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G38060.2	2.8e-33	63.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G65000.1	1.8e-08	33.73	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35106:SF5	CARBOXYPEPTIDASE	coord: 29..136
None	No IPR available	PANTHER	PTHR35106	BNAA07G25190D PROTEIN	coord: 29..136

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G003630	CmoCh01G003630	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G003630.1:exon:1802	CmoCh01G003630.1:exon:1802	exon
CmoCh01G003630.1:exon:1803	CmoCh01G003630.1:exon:1803	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G003630.1:five_prime_utr	CmoCh01G003630.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G003630.1:cds	CmoCh01G003630.1:cds	CDS
CmoCh01G003630.1:cds	CmoCh01G003630.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G003630.1:three_prime_utr	CmoCh01G003630.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G003630.1	CmoCh01G003630.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane