Cmc12g0322951.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc12g0322951.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDUF4219 domain-containing protein
LocationCMiso1.1chr12: 11463835 .. 11466109 (+)
Sequence length1575
RNA-Seq ExpressionCmc12g0322951.1
SyntenyCmc12g0322951.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCTTAGAACAGCTATATTAAGGTGAGGATCATATTCAAAATCAAATCTTTAACTTTTATGCTTGTTAAAATATAAACTTGATTTGAGTTGACAACACTTAGGCCTGGTCCAAATAGAAGCTCACTTTCTAGAAGTAGTAATTATTATAATATTCTAGAGAAATTAACTGTAGGAGATATTTAGGGTAAAAATATCTAGATAACATGATAAAGAAGTGTAATTGTAGAGAATATTCTAAAATGGCATTTGTAACCATTAGATCAAAAATGTGTTGGGCAAAATCTTAGCCATGCATTTAGGGGTGCTAACTAATATAAATAGAAGAGATGTCCTACCATGTGTATCAAGCCAAAAAATTAGAAGGGTCTAATAACTCAACTAACATTTTTCCTCAATTTTCTTTTCCAAATTTTCTAATCTCTAAAATTCAATTCCAACAAAGTGGTATTAGAGCTTAAGGATTCTTTTAAAGAATATGGCAAGCAATAGCAAGGTTCCATTCGTAGTCTCAATGCTCAACAAGTGCAACTATGATAATGAAGTATCAAGATGAAGACTCTTCTTGGCTCACAAGATGTGTGGAAGATGGTAGAAAAAGAATACATTGAACCAAAAAATGATGGTGGTTTTTCTCAAGCACAAAGGGATACTTTGAGAGATTTAGGAAAGGGAGACAAGAAGGCTCTTTATATAATCCATGAAGGATTAGATAATGATGCATTTGAAGAAGTTTCAAACGCAAAGACGGCGAAAGTAGCAAGGGAGATGCTTCGAACATTGTACGGCATCATAGATTGCCAACAAAAAGGTACGTCTTCAAACTCTAAAAGCAAAGTTGGAAACTTTGTATATGAAATAAGGGGAAGCCATCTTAGACTATTTTTCTAGAGTTTTAATTGTCACCAATCAACTTAAAAGAAATTATTGATGATGTTAAAACTATGGAAAAGATACTAAAATCTTTAGATTCAAAGTTTGGTCATATTGTTGCCATAATCGCAGAAAAAGACGAAGGTAGGAATCAAGAATCAATTGCTTAAGTTTTGAGTTAATTCAACTGGTGGATGAGTTAGTCTCAATAATACAGGCGAACAAGGACAAAAATGTGGTGAACATTGAAGATGAGAAAGAGGACAAGGACAAGGATATGGTTGGGGAGGCCCAGTGAAGACAACAATAAATACCAAAGAAGGATAGTAGAAACTCAACAAGAGGTCATGGGGAAAGCAACTCAAAATCAAGGTATAACAAATCATCTATAGTATATATAAAATGATGGAAGTAGAAACACTTTTTAGCCTCATTTTACCCTTTCAATATAACCTTCTTTAGTCTTGCTTTAGTGACAATTTTGTCATTCACATAGATTTAATGTTTGTGATCATTTTCATTACAAATTTTAATAACCATGTTATTTACTTTTAACTTTTTCTATCTTCTTATTAAAAAAAAATTAATTCCATAACTGATATTAGTTAATACTCTATGTTATTAGAGCCATAATGTACCTATTTTTGTTGAACTAATTCTTGTTTGGTTATTTTATTAACAAAACGGTTGAGTGAGAACTTTATTTGTATTCTTATGTTGTTTAATCCATTGATTTATTATTCTCCCTCCTTCCACTACCCACAACAATAGGAAAATAGTCATCCCTCTCAAAATTTTAAAATTTTATCTCCAATTAATTATGTCATTTAAATTTATCCAAATTCATTCACATTTCTCTCTCTCCCTTGATCTTCTATCTCCCAACTATTCAAATTCTCTTATCTCATATTAACTCTTTTATATCTCTTTCAACCTTTCAAATTCTTCATTTTCAAATCTTTGGGTATAAACATTCTATTCTTTTTTTTTCTTTCATTCATGTTCATAAATCACAACAAAATGCTAAGGGTGAAGAAGAAATCAAATCACTCTTCTCTATTCTCTTATAATTATTTTTTTTTTATTTTGTTGTCTATTTTTTTTATATAGAAGTATGCTTGTATATATTTCTTCATTTATAAGTTTCATTTTAGTACACAACAGAAGTTGGGAAAACTTGAACCACCAACTTCGTGGTTGACATGTACATATGGCTATGCTCTTTCTGTTTAATTCCTGTAATATTGAGAATCATTTTTAATGTGACCATGGGAATCTTGCTCATGTTTTTTTCTCCATTTATTTTTTTTATTAAAGCTATTTTATTAACGAAATAGTTGAGTGACTTATACTTTAATTTTGTTAAAACAATGTAAATATTGTTGGAATTTATTAAGTATGCA

mRNA sequence

GGGCTTAGAACAGCTATATTAAGTGGTATTAGAGCTTAAGGATTCTTTTAAAGAATATGGCAAGCAATAGCAAGGTTCCATTCGTAGTCTCAATGCTCAACAAGTGCAACTATGATAATGAAGTATCAAGATGAAGACTCTTCTTGGCTCACAAGATGTGTGGAAGATGGTAGAAAAAGAATACATTGAACCAAAAAATGATGGTGGTTTTTCTCAAGCACAAAGGGATACTTTGAGAGATTTAGGAAAGGGAGACAAGAAGGCTCTTTATATAATCCATGAAGGATTAGATAATGATGCATTTGAAGAAGTTTCAAACGCAAAGACGGCGAAAGTAGCAAGGGAGATGCTTCGAACATTGTACGGCATCATAGATTGCCAACAAAAAGGCGAACAAGGACAAAAATGTGGTGAACATTGAAGATGAGAAAGAGGACAAGGACAAGGATATGGTTGGGGAGGCCCAGTGAAGACAACAATAAATACCAAAGAAGGATAGTAGAAACTCAACAAGAGGTCATGGGGAAAGCAACTCAAAATCAAGGTATAACAAATCATCTATAGTATATATAAAATGATGGAAGTAGAAACACTTTTTAGCCTCATTTTACCCTTTCAATATAACCTTCTTTAGTCTTGCTTTAGTGACAATTTTGTCATTCACATAGATTTAATGTTTGTGATCATTTTCATTACAAATTTTAATAACCATGTTATTTACTTTTAACTTTTTCTATCTTCTTATTAAAAAAAAATTAATTCCATAACTGATATTAGTTAATACTCTATGTTATTAGAGCCATAATGTACCTATTTTTGTTGAACTAATTCTTGTTTGGTTATTTTATTAACAAAACGGTTGAGTGAGAACTTTATTTGTATTCTTATGTTGTTTAATCCATTGATTTATTATTCTCCCTCCTTCCACTACCCACAACAATAGGAAAATAGTCATCCCTCTCAAAATTTTAAAATTTTATCTCCAATTAATTATGTCATTTAAATTTATCCAAATTCATTCACATTTCTCTCTCTCCCTTGATCTTCTATCTCCCAACTATTCAAATTCTCTTATCTCATATTAACTCTTTTATATCTCTTTCAACCTTTCAAATTCTTCATTTTCAAATCTTTGGGTATAAACATTCTATTCTTTTTTTTTCTTTCATTCATGTTCATAAATCACAACAAAATGCTAAGGGTGAAGAAGAAATCAAATCACTCTTCTCTATTCTCTTATAATTATTTTTTTTTTATTTTGTTGTCTATTTTTTTTATATAGAAGTATGCTTGTATATATTTCTTCATTTATAAGTTTCATTTTAGTACACAACAGAAGTTGGGAAAACTTGAACCACCAACTTCGTGGTTGACATGTACATATGGCTATGCTCTTTCTGTTTAATTCCTGTAATATTGAGAATCATTTTTAATGTGACCATGGGAATCTTGCTCATGTTTTTTTCTCCATTTATTTTTTTTATTAAAGCTATTTTATTAACGAAATAGTTGAGTGACTTATACTTTAATTTTGTTAAAACAATGTAAATATTGTTGGAATTTATTAAGTATGCA

Coding sequence (CDS)

ATGAAGACTCTTCTTGGCTCACAAGATGTGTGGAAGATGGTAGAAAAAGAATACATTGAACCAAAAAATGATGGTGGTTTTTCTCAAGCACAAAGGGATACTTTGAGAGATTTAGGAAAGGGAGACAAGAAGGCTCTTTATATAATCCATGAAGGATTAGATAATGATGCATTTGAAGAAGTTTCAAACGCAAAGACGGCGAAAGTAGCAAGGGAGATGCTTCGAACATTGTACGGCATCATAGATTGCCAACAAAAAGGCGAACAAGGACAAAAATGTGGTGAACATTGA

Protein sequence

MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEEVSNAKTAKVAREMLRTLYGIIDCQQKGEQGQKCGEH
Homology
[Close]
BLAST of Cmc12g0322951.1 vs. NCBI nr
Match: XP_022558588.1 (uncharacterized protein LOC106430953, partial [Brassica napus])

HSP 1 Score: 101.3 bits (251), Expect = 4.8e-18
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 1   MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
           M  +LG+ DVW++VEK ++EP+NDGG SQ Q+D LRD  K DKKAL +IH+GLD D FE+
Sbjct: 40  MMAILGAHDVWEIVEKGFVEPENDGGLSQTQKDGLRDSRKRDKKALCLIHQGLDEDTFEK 99

Query: 61  VSNAKTAKVAREMLRTLY 79
           V+ AKT+K A E LRT Y
Sbjct: 100 VAGAKTSKEAWEKLRTSY 117

[Close]
BLAST of Cmc12g0322951.1 vs. NCBI nr
Match: XP_028556025.1 (uncharacterized protein LOC110109975 [Dendrobium catenatum])

HSP 1 Score: 101.3 bits (251), Expect = 4.8e-18
Identity = 47/78 (60.26%), Postives = 64/78 (82.05%), Query Frame = 0 

Query: 1   MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
           MK LLG+QDVW+M+EK Y EP+++   SQAQ+D+LRD  K DKKALY+I +GLD+D+FE+
Sbjct: 26  MKALLGAQDVWEMIEKGYNEPQDESSLSQAQKDSLRDSRKRDKKALYLIFQGLDDDSFEK 85

Query: 61  VSNAKTAKVAREMLRTLY 79
           +S+AK+AK A E L+T Y
Sbjct: 86  ISDAKSAKEAWEKLQTSY 103

[Close]
BLAST of Cmc12g0322951.1 vs. NCBI nr
Match: XP_013616937.1 (PREDICTED: uncharacterized protein LOC106323344, partial [Brassica oleracea var. oleracea])

HSP 1 Score: 101.3 bits (251), Expect = 4.8e-18
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 1   MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
           M  +LG+ DVW++VEK ++EP+NDGG SQ Q+D LRD  K DKKAL +IH+GLD D FE+
Sbjct: 40  MMAILGAHDVWEIVEKGFVEPENDGGLSQTQKDGLRDSRKRDKKALCLIHQGLDEDTFEK 99

Query: 61  VSNAKTAKVAREMLRTLY 79
           V+ AKT+K A E LRT Y
Sbjct: 100 VAGAKTSKEAWEKLRTSY 117

[Close]
BLAST of Cmc12g0322951.1 vs. NCBI nr
Match: XP_020272424.1 (uncharacterized protein LOC109847605 [Asparagus officinalis])

HSP 1 Score: 100.5 bits (249), Expect = 8.2e-18
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 1   MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
           M  +LG+ DVW++VEK +IEP+NDG  SQ Q+D+LRD  K DKKALY+I++GLD D FE+
Sbjct: 25  MTAILGAHDVWEIVEKCFIEPENDGSLSQTQKDSLRDSRKRDKKALYLIYQGLDEDTFEK 84

Query: 61  VSNAKTAKVAREMLRTLY 79
           V+ AKT K A E LRT Y
Sbjct: 85  VAGAKTTKEAWEKLRTSY 102

[Close]
BLAST of Cmc12g0322951.1 vs. NCBI nr
Match: XP_020688719.2 (uncharacterized protein LOC110104092 [Dendrobium catenatum])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 0 

Query: 1   MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
           MK LLG+QDVW+M+EK Y EP+++   SQAQ+D+LRD  K DKKALY+I +GLD+D+FE+
Sbjct: 26  MKALLGAQDVWEMIEKGYKEPQDESSLSQAQKDSLRDSRKRDKKALYLIFQGLDDDSFEK 85

Query: 61  VSNAKTAKVAREMLRTLY 79
           +S+ K+AK A E L+T Y
Sbjct: 86  LSDVKSAKEAWEKLQTSY 103

[Close]
BLAST of Cmc12g0322951.1 vs. ExPASy TrEMBL
Match: A0A0D2ZYH9 (DUF4219 domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 1   MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
           + T+LG+ DVW++VEK + EP+NDGG SQ Q+D LRD  K DKKAL +IH+GLD D FE+
Sbjct: 25  LMTILGAHDVWEIVEKGFNEPENDGGLSQTQKDGLRDSRKRDKKALCLIHQGLDEDTFEK 84

Query: 61  VSNAKTAKVAREMLRTLY 79
           V+ AKT+K A E L+T Y
Sbjct: 85  VAGAKTSKEAWEKLQTSY 102

[Close]
BLAST of Cmc12g0322951.1 vs. ExPASy TrEMBL
Match: A0A2I0W8B3 (DUF4219 domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca021744 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.6e-17
Identity = 46/78 (58.97%), Postives = 62/78 (79.49%), Query Frame = 0 

Query: 1   MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
           MK LLG QDVW+M+EK Y EP+++   SQAQ+D+LRD  K DKKALY+I +GLD+D+FE+
Sbjct: 26  MKALLGVQDVWEMIEKGYKEPQDESSLSQAQKDSLRDSRKRDKKALYLIFQGLDDDSFEK 85

Query: 61  VSNAKTAKVAREMLRTLY 79
           + +AK+AK A E L+T Y
Sbjct: 86  IFDAKSAKEAWEKLQTSY 103

[Close]
BLAST of Cmc12g0322951.1 vs. ExPASy TrEMBL
Match: A0A6J0M5U4 (uncharacterized protein LOC108839444 OS=Raphanus sativus OX=3726 GN=LOC108839444 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.7e-17
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0 

Query: 1   MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
           M  +LG+ DVW++VEK + EP+NDGG SQ Q+D LRD  K DKKAL +I++GLD D FE+
Sbjct: 25  MMAILGAHDVWEIVEKGFNEPENDGGLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEK 84

Query: 61  VSNAKTAKVAREMLRTLY 79
           V+ AKT+K A E LRT Y
Sbjct: 85  VAGAKTSKEAWEKLRTSY 102

[Close]
BLAST of Cmc12g0322951.1 vs. ExPASy TrEMBL
Match: A0A0D3E6W5 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.5e-17
Identity = 44/76 (57.89%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 3  TLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEEVS 62
          ++LG+ DVW++VEK ++EP+NDGG SQ Q+D LRD  K DKKAL +I++GLD D FE+V+
Sbjct: 2  SILGAHDVWEIVEKGFVEPENDGGLSQTQKDGLRDSRKRDKKALCLIYQGLDEDIFEKVA 61

Query: 63 NAKTAKVAREMLRTLY 79
           AKT+K A E L+T Y
Sbjct: 62 RAKTSKEAWEKLQTSY 77

[Close]
BLAST of Cmc12g0322951.1 vs. ExPASy TrEMBL
Match: A0A2K3KCW6 (Copia-type reverse transcriptase-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g061961 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.8e-17
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 0 

Query: 1  MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
          M TLLG+ DVW++VEK  + P+N+G  SQ Q+D+LRD  K DKKALY+I++GLD D FE+
Sbjct: 14 MVTLLGAHDVWEIVEKGLVIPENEGNLSQTQKDSLRDSRKRDKKALYLIYQGLDEDTFEK 73

Query: 61 VSNAKTAKVAREMLRTLY 79
          VS A TAK   E LRT Y
Sbjct: 74 VSGATTAKETWEKLRTSY 91

[Close]
BLAST of Cmc12g0322951.1 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-17
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 1  MKTLLGSQDVWKMVEKEYIEPKNDGGFSQAQRDTLRDLGKGDKKALYIIHEGLDNDAFEE 60
          MK +LG+ DVW++VEK +IEP+N+G  SQ Q+D LRD  K DKKAL +I++GLD D FE+
Sbjct: 25 MKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEK 84

Query: 61 VSNAKTAK 69
          V  A +AK
Sbjct: 85 VVEATSAK 92

The following BLAST results are available for this feature:
BLAST of Cmc12g0322951.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022558588.14.8e-1860.26uncharacterized protein LOC106430953, partial [Brassica napus][more]
XP_028556025.14.8e-1860.26uncharacterized protein LOC110109975 [Dendrobium catenatum][more]
XP_013616937.14.8e-1860.26PREDICTED: uncharacterized protein LOC106323344, partial [Brassica oleracea var.... [more]
XP_020272424.18.2e-1860.26uncharacterized protein LOC109847605 [Asparagus officinalis][more]
XP_020688719.22.4e-1758.97uncharacterized protein LOC110104092 [Dendrobium catenatum][more]
BLAST of Cmc12g0322951.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc12g0322951.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0D2ZYH92.0e-1758.97DUF4219 domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 P... [more]
A0A2I0W8B32.6e-1758.97DUF4219 domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0... [more]
A0A6J0M5U45.7e-1758.97uncharacterized protein LOC108839444 OS=Raphanus sativus OX=3726 GN=LOC108839444... [more]
A0A0D3E6W57.5e-1757.89Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A2K3KCW69.8e-1758.97Copia-type reverse transcriptase-like protein (Fragment) OS=Trifolium pratense O... [more]
BLAST of Cmc12g0322951.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48720.13.3e-1757.35unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B... [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc12g0322951Cmc12g0322951gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc12g0322951.1-exonCmc12g0322951.1-exon-CMiso1.1chr12:11463835..11463857exon
Cmc12g0322951.1-exonCmc12g0322951.1-exon-CMiso1.1chr12:11464279..11464644exon
Cmc12g0322951.1-exonCmc12g0322951.1-exon-CMiso1.1chr12:11464924..11466109exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc12g0322951.1-five_prime_utrCmc12g0322951.1-five_prime_utr-CMiso1.1chr12:11463835..11463857five_prime_UTR
Cmc12g0322951.1-five_prime_utrCmc12g0322951.1-five_prime_utr-CMiso1.1chr12:11464279..11464385five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc12g0322951.1-cdsCmc12g0322951.1-cds-CMiso1.1chr12:11464386..11464644CDS
Cmc12g0322951.1-cdsCmc12g0322951.1-cds-CMiso1.1chr12:11464924..11464955CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc12g0322951.1-three_prime_utrCmc12g0322951.1-three_prime_utr-CMiso1.1chr12:11464956..11466109three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc12g0322951.1Cmc12g0322951.1-proteinpolypeptide