Cmc11g0312201.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0312201.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr11: 31993209 .. 31995564 (+)
Sequence length	2356
RNA-Seq Expression	Cmc11g0312201.1
Synteny	Cmc11g0312201.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTAAAGGCTATTACCCCTTTAGTCCCTTTATCTTCATTCTAATTCTGGCAGTTAATTAAATTTGTAAATGTCTGCTTTCATTCTAATAAAAATTTTCATTTAGATTTCTTATACCAATGCTACCTAAATCATTTAACAATGATCCATAATTACTATTTTTTTCTTTATACAATTTGAAGATATATTCCTTTCAAAGGTTAAAATTGTAATATTACTCGTACATTAATAAGATTGAGGACGAATAGTATTTAATTCCAAGGCACCAACAAAATGAATGAACCAATGTCACCACAACAAAAAAAAATGATGAAAATAGTTCCAAGAGAATTGAAAATTGGGAAATTGATGGATTGCTTTACTAACATTTTTTTTTTCATCTCATTTTGAATTAAAAAAACCCTCTAATAACATTGTTTTTTTCTATTTCTATTTAAACCAGAAAAAAAAAAGGTGCTAAAGATTGATTTCCATGAACAAGATTAAATTTTGACCGACTGTTGTTCCCTATCACACATTTCTATTTTCAAATAAAACTTTCACCCAAATATTTTATAGCACAAGACAAATTGTCCCAAAAGCATTGTTGATTAAAAATAAAAAGAATACCAAGAAAAGTAATTATGAACCAAAATTAAAATAAGAAACAACTCAACTCAAATTAAATTAAATTACATCATTTTTTTTAAAAGCCCACTATCAATTCATAGCAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGGGGTTTTGAAGGGTCACCATCAGAAATTGGTTCTACCAAATCACAATGCTTAATTATTAAGCAAATTTCCAACTTCCAATTTAACTAAACAACTTATTATTATCATTATTATTGTAAATAATCTCTATCCATTTTTTAGTCTAAAAAAAAATCATATTTTTAATGCATTTTCTTTTCACTTTCCTACATATTTTCTGAGCAGCCAAACACAATCCATAACTCAAAAAAAAAAAAAATCTAATATTTAATAATAATAATAATAGAGAAAGAAAAAAAGGCATATTTCTCTAAAGTTGATGAAAGATGGGACCATACCTATATATTCCATTGCAAAATAAAACCTACTCTTTTTTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTGGGAATTTACGCTCTCATTTTGAGTCTCAAGAAAAATAATAAAAAAAAAAGGAGTGGGAAAATATCAAAACATCCTTTTTTTTTTAATATTCTGAAGTTCTAATTTGGACTCCAAAGACTCCATAAACGAGAATTGAATAACCCTAGCACGTCCGGCCATACCTTCCGGGCCAAACCCTTATGGATGTTCGGTGGAGGCGATGGGATAACCACCAAAGCCCCCCTTGACTCCACCGCCTCCTCTTCACTCCGCGGCGCCTCTCCGCTCTTCTCCTCTACTTCCACAGCGGCACTTCCTGATGTTGCCGGAGCGGCAGAAGAACCTTCATCAATCTGCAGAGGATGAGTTTCGGGCACCGGCAAAAGCGGTGGGGAAACAATATTCAAAGACTTATCCAGAGACCGGCGGCCGATTTTGTCCTTCCTCTTCCCTTTAACGTTCTTGCTGGATTTCTCCCCCTTGGCTAATTGCTCCTCAAATGCCTCAATGGCTTGATGAATCAGCTCCCCATTTGGAGACGAGTTCCATCGGTCCCAGTAACTCATGTAACAATCAAAGCAAGTAAGAGAAGGCGGCGCGTGAACACACGCGCTACGAGAGCCGGCGCGTGGAGTATCGGATTTCTTGGAAACTCTCTTGGAAAATTTCTTTCCGGAAACGGAAGAAGATGGTGATGAGGTTTCCATGGATCTCCTCATCATGAAGGCTAAAACCTCCCGGTCATCGACAGTGAGAACAGAGACGAGAGCAAAAATCGCTACCGGAAGATAGTTCAAGACATCAAAAAAGTTCCCATCGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGATGGATGAACTTTTCCTTTGTTCTTTATTTTCATATTGGACACTTTTGTGGTTCTTGGACAAAAAACGCAAATGGGTATTCGTATCTGTGCTTTTTTACGTTGTAAGGTTCTTGATAATGGTGGGATTTTAGAGATGGAAACAAGAGAGCGAGAGAGAGAGAGAGAGAGGGTTTTTGATTTTGTTCGTTCAGATATTAATTTACTTGGAAATTAAGGCAGAAGAAGAGAGACTGAGTGAAGGGTACAATCGGAAAAAGCTCACATGTCATTTTTTTTTTCTCTTTTACTTTTTTTATACGTTTAAAAAGTACTTAATTCAACTCGCAAATAAAGTTTAGATAACGAAGTTCTTTGCTTTCTTTAATTTTATTAGCTAATGAACTTATTGGGTACA

mRNA sequence

TCTAAAGGCTATTACCCCTTTAGTCCCTTTATCTTCATTCTAATTCTGGCAGTTAATTAAATTTGTAAATGTCTGCTTTCATTCTAATAAAAATTTTCATTTAGATTTCTTATACCAATGCTACCTAAATCATTTAACAATGATCCATAATTACTATTTTTTTCTTTATACAATTTGAAGATATATTCCTTTCAAAGGTTAAAATTGTAATATTACTCGTACATTAATAAGATTGAGGACGAATAGTATTTAATTCCAAGGCACCAACAAAATGAATGAACCAATGTCACCACAACAAAAAAAAATGATGAAAATAGTTCCAAGAGAATTGAAAATTGGGAAATTGATGGATTGCTTTACTAACATTTTTTTTTTCATCTCATTTTGAATTAAAAAAACCCTCTAATAACATTGTTTTTTTCTATTTCTATTTAAACCAGAAAAAAAAAAGGTGCTAAAGATTGATTTCCATGAACAAGATTAAATTTTGACCGACTGTTGTTCCCTATCACACATTTCTATTTTCAAATAAAACTTTCACCCAAATATTTTATAGCACAAGACAAATTGTCCCAAAAGCATTGTTGATTAAAAATAAAAAGAATACCAAGAAAAGTAATTATGAACCAAAATTAAAATAAGAAACAACTCAACTCAAATTAAATTAAATTACATCATTTTTTTTAAAAGCCCACTATCAATTCATAGCAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGGGGTTTTGAAGGGTCACCATCAGAAATTGGTTCTACCAAATCACAATGCTTAATTATTAAGCAAATTTCCAACTTCCAATTTAACTAAACAACTTATTATTATCATTATTATTGTAAATAATCTCTATCCATTTTTTAGTCTAAAAAAAAATCATATTTTTAATGCATTTTCTTTTCACTTTCCTACATATTTTCTGAGCAGCCAAACACAATCCATAACTCAAAAAAAAAAAAAATCTAATATTTAATAATAATAATAATAGAGAAAGAAAAAAAGGCATATTTCTCTAAAGTTGATGAAAGATGGGACCATACCTATATATTCCATTGCAAAATAAAACCTACTCTTTTTTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTGGGAATTTACGCTCTCATTTTGAGTCTCAAGAAAAATAATAAAAAAAAAAGGAGTGGGAAAATATCAAAACATCCTTTTTTTTTTAATATTCTGAAGTTCTAATTTGGACTCCAAAGACTCCATAAACGAGAATTGAATAACCCTAGCACGTCCGGCCATACCTTCCGGGCCAAACCCTTATGGATGTTCGGTGGAGGCGATGGGATAACCACCAAAGCCCCCCTTGACTCCACCGCCTCCTCTTCACTCCGCGGCGCCTCTCCGCTCTTCTCCTCTACTTCCACAGCGGCACTTCCTGATGTTGCCGGAGCGGCAGAAGAACCTTCATCAATCTGCAGAGGATGAGTTTCGGGCACCGGCAAAAGCGGTGGGGAAACAATATTCAAAGACTTATCCAGAGACCGGCGGCCGATTTTGTCCTTCCTCTTCCCTTTAACGTTCTTGCTGGATTTCTCCCCCTTGGCTAATTGCTCCTCAAATGCCTCAATGGCTTGATGAATCAGCTCCCCATTTGGAGACGAGTTCCATCGGTCCCAGTAACTCATGTAACAATCAAAGCAAGTAAGAGAAGGCGGCGCGTGAACACACGCGCTACGAGAGCCGGCGCGTGGAGTATCGGATTTCTTGGAAACTCTCTTGGAAAATTTCTTTCCGGAAACGGAAGAAGATGGTGATGAGGTTTCCATGGATCTCCTCATCATGAAGGCTAAAACCTCCCGGTCATCGACAGTGAGAACAGAGACGAGAGCAAAAATCGCTACCGGAAGATAGTTCAAGACATCAAAAAAGTTCCCATCGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGATGGATGAACTTTTCCTTTGTTCTTTATTTTCATATTGGACACTTTTGTGGTTCTTGGACAAAAAACGCAAATGGGTATTCGTATCTGTGCTTTTTTACGTTGTAAGGTTCTTGATAATGGTGGGATTTTAGAGATGGAAACAAGAGAGCGAGAGAGAGAGAGAGAGAGGGTTTTTGATTTTGTTCGTTCAGATATTAATTTACTTGGAAATTAAGGCAGAAGAAGAGAGACTGAGTGAAGGGTACAATCGGAAAAAGCTCACATGTCATTTTTTTTTTCTCTTTTACTTTTTTTATACGTTTAAAAAGTACTTAATTCAACTCGCAAATAAAGTTTAGATAACGAAGTTCTTTGCTTTCTTTAATTTTATTAGCTAATGAACTTATTGGGTACA

Coding sequence (CDS)

ATGTTCGGTGGAGGCGATGGGATAACCACCAAAGCCCCCCTTGACTCCACCGCCTCCTCTTCACTCCGCGGCGCCTCTCCGCTCTTCTCCTCTACTTCCACAGCGGCACTTCCTGATGTTGCCGGAGCGGCAGAAGAACCTTCATCAATCTGCAGAGGATGA

Protein sequence

MFGGGDGITTKAPLDSTASSSLRGASPLFSSTSTAALPDVAGAAEEPSSICRG

Homology

The following BLAST results are available for this feature:

BLAST of Cmc11g0312201.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc11g0312201.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc11g0312201.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc11g0312201.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..37

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0312201	Cmc11g0312201	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312201.1-exon	Cmc11g0312201.1-exon-CMiso1.1chr11:31993209..31995564	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312201.1-five_prime_utr	Cmc11g0312201.1-five_prime_utr-CMiso1.1chr11:31993209..31994523	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312201.1-cds	Cmc11g0312201.1-cds-CMiso1.1chr11:31994524..31994685	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312201.1-three_prime_utr	Cmc11g0312201.1-three_prime_utr-CMiso1.1chr11:31994686..31995564	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0312201.1	Cmc11g0312201.1-protein	polypeptide