Cmc11g0293831.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc11g0293831.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr11: 10188915 .. 10189301 (+)
Sequence length	387
RNA-Seq Expression	Cmc11g0293831.1
Synteny	Cmc11g0293831.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACGTATTCCGTATGCCTCAGCTGCGGACAGCTTAATGTATGCTATACTCTGTACTAAGCTAGACATTTGTTATGTAGTGGAAATAGTCAGTAGGTATCAATCGAACCTAGGGTTAGACCATTTGACGGTGGTTAAAATTATTCTCAAGTATCTTAAAAGAACGAGAGACTACATGATTGTGTATGGAGCTAAGAATTTTACCCTTACAGGATACACTGACTCTGATTTCCAAATCGATAAGGATTCTAGGAAATCCACGTCGGGATTAGTGTTCATCCTGAATGACGGAGTTGTGGTATGGCATAGCATCAAGGAAGGATACATAGCGGACTCTACTATGGAGGTTGAGTATGTTGCTGCTTTTGAAGCAGAAAAGCAATAG

mRNA sequence

ATGAGACGTATTCCGTATGCCTCAGCTGCGGACAGCTTAATGTATGCTATACTCTGTACTAAGCTAGACATTTGTTATGTAGTGGAAATAGTCAGTAGGTATCAATCGAACCTAGGGTTAGACCATTTGACGGTGGTTAAAATTATTCTCAAGTATCTTAAAAGAACGAGAGACTACATGATTGTGTATGGAGCTAAGAATTTTACCCTTACAGGATACACTGACTCTGATTTCCAAATCGATAAGGATTCTAGGAAATCCACGTCGGGATTAGTGTTCATCCTGAATGACGGAGTTGTGGTATGGCATAGCATCAAGGAAGGATACATAGCGGACTCTACTATGGAGGTTGAGTATGTTGCTGCTTTTGAAGCAGAAAAGCAATAG

Coding sequence (CDS)

ATGAGACGTATTCCGTATGCCTCAGCTGCGGACAGCTTAATGTATGCTATACTCTGTACTAAGCTAGACATTTGTTATGTAGTGGAAATAGTCAGTAGGTATCAATCGAACCTAGGGTTAGACCATTTGACGGTGGTTAAAATTATTCTCAAGTATCTTAAAAGAACGAGAGACTACATGATTGTGTATGGAGCTAAGAATTTTACCCTTACAGGATACACTGACTCTGATTTCCAAATCGATAAGGATTCTAGGAAATCCACGTCGGGATTAGTGTTCATCCTGAATGACGGAGTTGTGGTATGGCATAGCATCAAGGAAGGATACATAGCGGACTCTACTATGGAGGTTGAGTATGTTGCTGCTTTTGAAGCAGAAAAGCAATAG

Protein sequence

MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYMIVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYVAAFEAEKQ

Homology

[Close]

BLAST of Cmc11g0293831.1 vs. NCBI nr
Match: KAA0043455.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
           MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM
Sbjct: 32  MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 91

Query: 61  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
           IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV
Sbjct: 92  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 151

Query: 121 AAFEAEKQ 129
           AAFEAEKQ
Sbjct: 152 AAFEAEKQ 159

[Close]

BLAST of Cmc11g0293831.1 vs. NCBI nr
Match: TYK24227.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 3.8e-63
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
           MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM
Sbjct: 32  MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 91

Query: 61  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
           IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDG VVWHSIKEGYIADSTMEVEYV
Sbjct: 92  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGAVVWHSIKEGYIADSTMEVEYV 151

Query: 121 AAFEAEKQ 129
           AAFEAEKQ
Sbjct: 152 AAFEAEKQ 159

[Close]

BLAST of Cmc11g0293831.1 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-47
Identity = 101/128 (78.91%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
           MRRIPYASA  SLMYA+LCT+ DICY V IVSRYQSN GLDH T VKIILKYL+RTRDYM
Sbjct: 168 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYM 227

Query: 61  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
           +VYGAK+  LTGYTDSDFQ DKDSRKSTSG VF LN+G VVW SIK+G IADSTME EYV
Sbjct: 228 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYV 287

Query: 121 AAFEAEKQ 129
           AA EA K+
Sbjct: 288 AACEAAKE 295

[Close]

BLAST of Cmc11g0293831.1 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 5.0e-47
Identity = 100/128 (78.12%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1    MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
            MRRIPYASA  SLMYA+LCT+ DICY V IVSRYQSN GLDH T VKI+LKYL+RTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 1066

Query: 61   IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
            +VYGAK+  LTGYTDSDFQ DKDSRKSTSG VF LN G VVW SIK+G IADSTME EYV
Sbjct: 1067 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  AAFEAEKQ 129
            AA EA K+
Sbjct: 1127 AACEAAKE 1134

[Close]

BLAST of Cmc11g0293831.1 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 5.0e-47
Identity = 100/128 (78.12%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1    MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
            MRRIPYASA  SLMYA+LCT+ DICY V IVSRYQSN GLDH T VKI+LKYL+RTRDYM
Sbjct: 881  MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 940

Query: 61   IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
            +VYGAK+  LTGYTDSDFQ DKDSRKSTSG VF LN G VVW SIK+G IADSTME EYV
Sbjct: 941  LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1000

Query: 121  AAFEAEKQ 129
            AA EA K+
Sbjct: 1001 AACEAAKE 1008

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.0e-23
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 1    MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
            M ++PY+SA  SLMYA++CT+ DI + V +VSR+  N G +H   VK IL+YL+ T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
            + +G  +  L GYTD+D   D D+RKS++G +F  + G + W S  +  +A ST E EY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  AAFEAEKQ 129
            AA E  K+
Sbjct: 1226 AATETGKE 1233

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-16
Identity = 48/129 (37.21%), Postives = 80/129 (62.02%), Query Frame = 0


Query: 1   MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
           M+ +PY SA  ++MY ++ T+ D+   V ++S++ S+    H   +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  IVY-GAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEY 120
           + +  A    L GY+D+D+  D +SR+STSG +F LN G V W S K+  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VAAFEAEKQ 129
           +A  EA ++
Sbjct: 121 MALSEATQE 129

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 75.1 bits (183), Expect = 6.4e-13
Identity = 46/129 (35.66%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 5    PYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYMIVYG 64
            P  S    LMY +LCT+ D+   V I+SRY S    +    +K +L+YLK T D  +++ 
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF- 1239

Query: 65   AKNFT----LTGYTDSDFQIDKDSRKSTSGLVFILND-GVVVWHSIKEGYIADSTMEVEY 124
             KN      + GY DSD+   +  RKST+G +F + D  ++ W++ ++  +A S+ E EY
Sbjct: 1240 KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEY 1299

Query: 125  VAAFEAEKQ 129
            +A FEA ++
Sbjct: 1300 MALFEAVRE 1307

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-07
Identity = 42/126 (33.33%), Postives = 63/126 (50.00%), Query Frame = 0


Query: 6    YASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYMIVYGA 65
            Y     SL Y +  T+ DI Y V  +S++      +HL  +K IL+YL  T ++ I    
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   KN-FTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEY--VAA 125
             N  +L  Y+D+D+  DKD   ST+G +  L    + W S K+  +  S+ E EY  VA 
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  FEAEKQ 129
              +E Q
Sbjct: 1365 TSSEMQ 1369

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.0e-07
Identity = 37/115 (32.17%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 6    YASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYMIVYGA 65
            Y     SL Y +  T+ D+ Y V  +S+Y      DH   +K +L+YL  T D+ I    
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   KN-FTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEY 120
             N  +L  Y+D+D+  D D   ST+G +  L    + W S K+  +  S+ E EY
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEY 1341

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy TrEMBL
Match: A0A5A7TPW9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00730 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.4e-64
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
           MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM
Sbjct: 32  MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 91

Query: 61  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
           IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV
Sbjct: 92  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 151

Query: 121 AAFEAEKQ 129
           AAFEAEKQ
Sbjct: 152 AAFEAEKQ 159

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy TrEMBL
Match: A0A5D3DKT2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00330 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
           MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM
Sbjct: 32  MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 91

Query: 61  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
           IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDG VVWHSIKEGYIADSTMEVEYV
Sbjct: 92  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGAVVWHSIKEGYIADSTMEVEYV 151

Query: 121 AAFEAEKQ 129
           AAFEAEKQ
Sbjct: 152 AAFEAEKQ 159

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.4e-48
Identity = 101/128 (78.91%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
           MRRIPYASA  SLMYA+LCT+ DICY V IVSRYQSN GLDH T VKIILKYL+RTRDYM
Sbjct: 168 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYM 227

Query: 61  IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
           +VYGAK+  LTGYTDSDFQ DKDSRKSTSG VF LN+G VVW SIK+G IADSTME EYV
Sbjct: 228 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYV 287

Query: 121 AAFEAEKQ 129
           AA EA K+
Sbjct: 288 AACEAAKE 295

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47
Identity = 100/128 (78.12%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1    MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
            MRRIPYASA  SLMYA+LCT+ DICY V IVSRYQSN GLDH T VKI+LKYL+RTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 1066

Query: 61   IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
            +VYGAK+  LTGYTDSDFQ DKDSRKSTSG VF LN G VVW SIK+G IADSTME EYV
Sbjct: 1067 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  AAFEAEKQ 129
            AA EA K+
Sbjct: 1127 AACEAAKE 1134

[Close]

BLAST of Cmc11g0293831.1 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47
Identity = 100/128 (78.12%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1    MRRIPYASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYM 60
            MRRIPYASA  SLMYA+LCT+ DICY V IVSRYQSN GLDH T VKI+LKYL+RTRDYM
Sbjct: 881  MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 940

Query: 61   IVYGAKNFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYV 120
            +VYGAK+  LTGYTDSDFQ DKDSRKSTSG VF LN G VVW SIK+G IADSTME EYV
Sbjct: 941  LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1000

Query: 121  AAFEAEKQ 129
            AA EA K+
Sbjct: 1001 AACEAAKE 1008

[Close]

BLAST of Cmc11g0293831.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09
Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 6   YASAADSLMYAILCTKLDICYVVEIVSRYQSNLGLDHLTVVKIILKYLKRTRDYMIVYGA 65
           Y      LMY +  T+LDI + V  +S++     L H   V  IL Y+K T    + Y +
Sbjct: 378 YRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  K-NFTLTGYTDSDFQIDKDSRKSTSGLVFILNDGVVVWHSIKEGYIADSTMEVEYVA 122
           +    L  ++D+ FQ  KD+R+ST+G    L   ++ W S K+  ++ S+ E EY A
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRA 493

The following BLAST results are available for this feature:

BLAST of Cmc11g0293831.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043455.1	1.3e-63	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK24227.1	3.8e-63	99.22	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061170.1	1.7e-47	78.91	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	5.0e-47	78.13	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	5.0e-47	78.13	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0293831.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.0e-23	42.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	2.8e-16	37.21	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	6.4e-13	35.66	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	6.9e-07	33.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	9.0e-07	32.17	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc11g0293831.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPW9	6.4e-64	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G007...	[more]
A0A5D3DKT2	1.9e-63	99.22	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00330...	[more]
A0A5A7V1F5	8.4e-48	78.91	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
A0A5A7TZD0	2.4e-47	78.13	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	2.4e-47	78.13	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Cmc11g0293831.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.4e-09	32.48	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 120..128
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 13..92
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 13..92
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 71..128 e-value: 7.30343E-19 score: 74.8121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc11g0293831	Cmc11g0293831	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0293831.1-exon	Cmc11g0293831.1-exon-CMiso1.1chr11:10188915..10189301	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc11g0293831.1-cds	Cmc11g0293831.1-cds-CMiso1.1chr11:10188915..10189301	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc11g0293831.1	Cmc11g0293831.1-protein	polypeptide