Cmc07g0201711.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc07g0201711.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr07: 24071551 .. 24072696 (-)
Sequence length681
RNA-Seq ExpressionCmc07g0201711.1
SyntenyCmc07g0201711.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATATAAATGGAGCTTAAAAGAGCTCAAGCAAATGCACTCTCAAAATAATATATTATATCTTCCAAACATATTTCATATTTTTCTAATCTACCACAAAAAGAGGGAAAAAAAAAAAAACCGAACTTCTAAAATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAGTAATGTTCATGCAAGGATATCTCATTCCATCTACATTCATGGTAAGCTTTTTTTCCCTTCTTAATTTCGTTTCAATTGCACTCAATATCATGCCTTCGTTTCAATTCTTTCTCCTATACAAAGTGAGCTTAAGCTTACTAATAGCCAACATAACCTTTTTATGTTAAAGTTTTTGATCTAAATCTTTATTGTTATTGTATTTGTAGAAATCTCATTCTTGTATGTGTCTCAAACATACCCTTAATTAATAAGAGATATACATACAAATTTTTTTTTAAAGAGAACATAAAATGATAAAATGATTTTAATTATTCGATAGTTGATTTTGGTTAAAAATTTATTATTTCCTTTGGTTATTATAATTACATATTATTTTGGGGTTAATTTTGCTAATTGCACGTTATCTTTCCAAATGTAGGTATGAAGTCTGCAGAGATAAATAATGTTAATACAATTGCTCAACCACCAAGTACCCAAAATGATGAAGATGGTAGGGTTCTAAATAATAGGAAACTACTTTTGAAATTAAGAATATATTATATAATGACAATAAACTTTTCATCATTTTCTAATTGTAGGTATGAAGAACAATACAGCAACAAACAATACAATTATTGCTGCTCCACCACCAGCAAAAAATGAAGATGGTGTTTGGAATGGGAACTTTTGATGCTCAATAATATCTGTATACAATATTCTTATTATCAATTTGATTTACTTAATGTAACAAATTCACTTATAGCTTATTAATCATTCTTTGGCTTTAAAAGAAAAAAGAAATTAGGATATGGAGTATATCTGTTTCATATATTTTCATAATTACGTGAGAAATCATTATTTTAATTTATTGTATTGTCACTAGTTCGAATTTACTACTTCATTTTTCGTAGTAAGAAGAAGAAGTTTTGAAGCTCTACCCGCATATATGGTTGAAAGCATAAGTTACAATAATTGGTG

mRNA sequence

CTCATATAAATGGAGCTTAAAAGAGCTCAAGCAAATGCACTCTCAAAATAATATATTATATCTTCCAAACATATTTCATATTTTTCTAATCTACCACAAAAAGAGGGAAAAAAAAAAAAACCGAACTTCTAAAATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAGTAATGTTCATGCAAGGATATCTCATTCCATCTACATTCATGGTATGAAGTCTGCAGAGATAAATAATGTTAATACAATTGCTCAACCACCAAGTACCCAAAATGATGAAGATGGTATGAAGAACAATACAGCAACAAACAATACAATTATTGCTGCTCCACCACCAGCAAAAAATGAAGATGGTGTTTGGAATGGGAACTTTTGATGCTCAATAATATCTGTATACAATATTCTTATTATCAATTTGATTTACTTAATGTAACAAATTCACTTATAGCTTATTAATCATTCTTTGGCTTTAAAAGAAAAAAGAAATTAGGATATGGAGTATATCTGTTTCATATATTTTCATAATTACGTGAGAAATCATTATTTTAATTTATTGTATTGTCACTAGTTCGAATTTACTACTTCATTTTTCGTAGTAAGAAGAAGAAGTTTTGAAGCTCTACCCGCATATATGGTTGAAAGCATAAGTTACAATAATTGGTG

Coding sequence (CDS)

ATGCACTCTCAAAATAATATATTATATCTTCCAAACATATTTCATATTTTTCTAATCTACCACAAAAAGAGGGAAAAAAAAAAAAACCGAACTTCTAAAATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAGTAATGTTCATGCAAGGATATCTCATTCCATCTACATTCATGGTATGAAGTCTGCAGAGATAAATAATGTTAATACAATTGCTCAACCACCAAGTACCCAAAATGATGAAGATGGTATGAAGAACAATACAGCAACAAACAATACAATTATTGCTGCTCCACCACCAGCAAAAAATGAAGATGGTGTTTGGAATGGGAACTTTTGA

Protein sequence

MHSQNNILYLPNIFHIFLIYHKKREKKKNRTSKMASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKNNTATNNTIIAAPPPAKNEDGVWNGNF
Homology
[Close]
BLAST of Cmc07g0201711.1 vs. NCBI nr
Match: KAA0044640.1 (hypothetical protein E6C27_scaffold46G003950 [Cucumis melo var. makuwa] >TYK16948.1 hypothetical protein E5676_scaffold130G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 3.6e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 34  MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKN 93
           MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKN
Sbjct: 1   MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKN 60

Query: 94  NTATNNTIIAAPPPAKNEDGVWNGNF 120
           NTATNNTIIAAPPPAKNEDGVWNGNF
Sbjct: 61  NTATNNTIIAAPPPAKNEDGVWNGNF 86

[Close]
BLAST of Cmc07g0201711.1 vs. NCBI nr
Match: KGN53137.1 (hypothetical protein Csa_015300 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-27
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 34  MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKN 93
           MASIIWKLFLIITLILAS+ VHAR S S YIH M+ AE+ NV+TIAQPP+TQNDEDGMKN
Sbjct: 1   MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAEL-NVDTIAQPPNTQNDEDGMKN 60

Query: 94  NTATNNTIIAAPPPAKNEDGVWNGNF 120
           NT TNNT  AAPPPAK+EDGVW+GNF
Sbjct: 61  NTETNNTTTAAPPPAKHEDGVWDGNF 85

[Close]
BLAST of Cmc07g0201711.1 vs. ExPASy TrEMBL
Match: A0A5D3D0C9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00850 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.7e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 34  MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKN 93
           MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKN
Sbjct: 1   MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKN 60

Query: 94  NTATNNTIIAAPPPAKNEDGVWNGNF 120
           NTATNNTIIAAPPPAKNEDGVWNGNF
Sbjct: 61  NTATNNTIIAAPPPAKNEDGVWNGNF 86

[Close]
BLAST of Cmc07g0201711.1 vs. ExPASy TrEMBL
Match: A0A0A0KXJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022240 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 34  MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKN 93
           MASIIWKLFLIITLILAS+ VHAR S S YIH M+ AE+ NV+TIAQPP+TQNDEDGMKN
Sbjct: 1   MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAEL-NVDTIAQPPNTQNDEDGMKN 60

Query: 94  NTATNNTIIAAPPPAKNEDGVWNGNF 120
           NT TNNT  AAPPPAK+EDGVW+GNF
Sbjct: 61  NTETNNTTTAAPPPAKHEDGVWDGNF 85

The following BLAST results are available for this feature:
BLAST of Cmc07g0201711.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044640.13.6e-39100.00hypothetical protein E6C27_scaffold46G003950 [Cucumis melo var. makuwa] >TYK1694... [more]
KGN53137.12.4e-2780.23hypothetical protein Csa_015300 [Cucumis sativus][more]
BLAST of Cmc07g0201711.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc07g0201711.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D0C91.7e-39100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KXJ21.2e-2780.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022240 PE=4 SV=1[more]
BLAST of Cmc07g0201711.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..104

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc07g0201711Cmc07g0201711gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0201711.1-exonCmc07g0201711.1-exon-CMiso1.1chr07:24071551..24071929exon
Cmc07g0201711.1-exonCmc07g0201711.1-exon-CMiso1.1chr07:24072018..24072089exon
Cmc07g0201711.1-exonCmc07g0201711.1-exon-CMiso1.1chr07:24072467..24072696exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0201711.1-three_prime_utrCmc07g0201711.1-three_prime_utr-CMiso1.1chr07:24071551..24071837three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0201711.1-cdsCmc07g0201711.1-cds-CMiso1.1chr07:24071838..24071929CDS
Cmc07g0201711.1-cdsCmc07g0201711.1-cds-CMiso1.1chr07:24072018..24072089CDS
Cmc07g0201711.1-cdsCmc07g0201711.1-cds-CMiso1.1chr07:24072467..24072662CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc07g0201711.1-five_prime_utrCmc07g0201711.1-five_prime_utr-CMiso1.1chr07:24072663..24072696five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc07g0201711.1Cmc07g0201711.1-proteinpolypeptide