Cmc07g0185441.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0185441.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 3499777 .. 3500559 (+)
Sequence length	783
RNA-Seq Expression	Cmc07g0185441.1
Synteny	Cmc07g0185441.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGGTATGGGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAGATGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCTAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTATAAGTCCAACCCAGGGTTAGACCAATGGACGGCGGTTAAAATCATTCTCAAGTATCTTAGAAGAACGAGAGACTACATGTTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAATCGATAAGGATTCTAGAAAATCTACGTCGGGATTAGTGTTCACCCTAAATGGGGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATACGTCGCTGCTTATGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAATTCCTACATGATTTAGAAGTTGTTCCAAACATGAATTTGCCCATCACTCTATATTGTGATAACAGTGGAGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGGGAAACACATAGAGAGGAAGTATCACCTGATACGAGAGATTGTGCAACGAGGGGATGTGATCATCACCAAGATCGCTTCGGAGCACAACATTGCTGATCCATATACGAAGACTCTCACGGCTAAATTGTTCGAGGGTCATCTAGAAAGTTTAGATCTACGAGATATGTACATTAGGTAA

mRNA sequence

ATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGGTATGGGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAGATGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCTAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTATAAGTCCAACCCAGGGTTAGACCAATGGACGGCGGTTAAAATCATTCTCAAGTATCTTAGAAGAACGAGAGACTACATGTTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAATCGATAAGGATTCTAGAAAATCTACGTCGGGATTAGTGTTCACCCTAAATGGGGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATACGTCGCTGCTTATGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAATTCCTACATGATTTAGAAGTTGTTCCAAACATGAATTTGCCCATCACTCTATATTGTGATAACAGTGGAGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGGGAAACACATAGAGAGGAAGTATCACCTGATACGAGAGATTGTGCAACGAGGGGATGTGATCATCACCAAGATCGCTTCGGAGCACAACATTGCTGATCCATATACGAAGACTCTCACGGCTAAATTGTTCGAGGGTCATCTAGAAAGTTTAGATCTACGAGATATGTACATTAGGTAA

Coding sequence (CDS)

ATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGGTATGGGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAGATGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCTAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTATAAGTCCAACCCAGGGTTAGACCAATGGACGGCGGTTAAAATCATTCTCAAGTATCTTAGAAGAACGAGAGACTACATGTTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAATCGATAAGGATTCTAGAAAATCTACGTCGGGATTAGTGTTCACCCTAAATGGGGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATACGTCGCTGCTTATGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAATTCCTACATGATTTAGAAGTTGTTCCAAACATGAATTTGCCCATCACTCTATATTGTGATAACAGTGGAGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGGGAAACACATAGAGAGGAAGTATCACCTGATACGAGAGATTGTGCAACGAGGGGATGTGATCATCACCAAGATCGCTTCGGAGCACAACATTGCTGATCCATATACGAAGACTCTCACGGCTAAATTGTTCGAGGGTCATCTAGAAAGTTTAGATCTACGAGATATGTACATTAGGTAA

Protein sequence

MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVGIVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTSGLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTLTAKLFEGHLESLDLRDMYIR

Homology

[Close]

BLAST of Cmc07g0185441.1 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 500.0 bits (1286), Expect = 1.3e-137
Identity = 245/260 (94.23%), Postives = 251/260 (96.54%), Query Frame = 0


Query: 1    MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
            MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMYAMLCTR DICYAVG
Sbjct: 976  MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVG 1035

Query: 61   IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
            IVSRY+SNPGLD WTAVKI+LKYLRRTRDYM VYGAKDLILTGYTDSDFQ DKDSRKSTS
Sbjct: 1036 IVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS 1095

Query: 121  GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
            G VFTLNGGAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWLRKFLHDLEVVPNMNLPI
Sbjct: 1096 GSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPI 1155

Query: 181  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
            TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TKTL
Sbjct: 1156 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTL 1215

Query: 241  TAKLFEGHLESLDLRDMYIR 261
            TAK+FEGHLESL LRDMYIR
Sbjct: 1216 TAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc07g0185441.1 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 500.0 bits (1286), Expect = 1.3e-137
Identity = 245/260 (94.23%), Postives = 251/260 (96.54%), Query Frame = 0


Query: 1    MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
            MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMYAMLCTR DICYAVG
Sbjct: 850  MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVG 909

Query: 61   IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
            IVSRY+SNPGLD WTAVKI+LKYLRRTRDYM VYGAKDLILTGYTDSDFQ DKDSRKSTS
Sbjct: 910  IVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS 969

Query: 121  GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
            G VFTLNGGAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWLRKFLHDLEVVPNMNLPI
Sbjct: 970  GSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPI 1029

Query: 181  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
            TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TKTL
Sbjct: 1030 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTL 1089

Query: 241  TAKLFEGHLESLDLRDMYIR 261
            TAK+FEGHLESL LRDMYIR
Sbjct: 1090 TAKVFEGHLESLGLRDMYIR 1109

[Close]

BLAST of Cmc07g0185441.1 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 498.8 bits (1283), Expect = 2.8e-137
Identity = 245/260 (94.23%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1   MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
           MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMY MLCTR DICYAVG
Sbjct: 41  MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDICYAVG 100

Query: 61  IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
           IVSRY+SNPGLD WTAVKIILKYLRRTRDYM VYGAKDLILTGYTDSDFQ DKDSRKSTS
Sbjct: 101 IVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS 160

Query: 121 GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
           G VFTLNGGAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWLRKFLHDLEVVPNMNLPI
Sbjct: 161 GSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPI 220

Query: 181 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
           TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TKTL
Sbjct: 221 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTL 280

Query: 241 TAKLFEGHLESLDLRDMYIR 261
           TAK+FEGHLESL LRDMYIR
Sbjct: 281 TAKVFEGHLESLGLRDMYIR 300

[Close]

BLAST of Cmc07g0185441.1 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 494.2 bits (1271), Expect = 6.9e-136
Identity = 243/260 (93.46%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1    MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
            MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMYAMLCTR DICYAVG
Sbjct: 976  MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVG 1035

Query: 61   IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
            IVSRY+SNPGLD WTAVKIILKYLRRTRDYM VYGAKDLILTGYT+SDFQ DKDSRKSTS
Sbjct: 1036 IVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTNSDFQTDKDSRKSTS 1095

Query: 121  GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
              VFTLNGGAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWL+KFLHDLEVVPNMNLPI
Sbjct: 1096 RSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLKKFLHDLEVVPNMNLPI 1155

Query: 181  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
            TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TKTL
Sbjct: 1156 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTL 1215

Query: 241  TAKLFEGHLESLDLRDMYIR 261
            TAK+FEGHLESL LRDMYIR
Sbjct: 1216 TAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc07g0185441.1 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 493.4 bits (1269), Expect = 1.2e-135
Identity = 243/260 (93.46%), Postives = 248/260 (95.38%), Query Frame = 0


Query: 1   MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
           MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMYAMLCTR DICYAVG
Sbjct: 137 MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVG 196

Query: 61  IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
           IVSRY+SNPGLD WT VKIILKYLRRTRDYM VYGAKDLILTGYTDSDFQ DKDSRKSTS
Sbjct: 197 IVSRYQSNPGLDHWTTVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS 256

Query: 121 GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
           G VFTLN GAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWLRKFLHDLEVVPNMNLPI
Sbjct: 257 GSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPI 316

Query: 181 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
           TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TK L
Sbjct: 317 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKIL 376

Query: 241 TAKLFEGHLESLDLRDMYIR 261
           TAK+FEGHLESL LRDMYIR
Sbjct: 377 TAKVFEGHLESLGLRDMYIR 396

[Close]

BLAST of Cmc07g0185441.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.0e-57
Identity = 114/246 (46.34%), Postives = 156/246 (63.41%), Query Frame = 0


Query: 1    MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
            M+N+K    P    + LSK+ CP T +E  +M ++PY+S VGSLMYAM+CTR DI +AVG
Sbjct: 1075 MKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVG 1134

Query: 61   IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
            +VSR+  NPG + W AVK IL+YLR T      +G  D IL GYTD+D   D D+RKS++
Sbjct: 1135 VVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSST 1194

Query: 121  GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
            G +FT +GGA+ W+S  Q C+A ST EAEY+AA E  KE +WL++FL +L +        
Sbjct: 1195 GYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGL---HQKEY 1254

Query: 181  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
             +YCD+  A+  SK    H R KHI+ +YH IRE+V    + + KI++  N AD  TK +
Sbjct: 1255 VVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVV 1314

Query: 241  TAKLFE 247
                FE
Sbjct: 1315 PRNKFE 1317

[Close]

BLAST of Cmc07g0185441.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 153.7 bits (387), Expect = 2.9e-36
Identity = 86/225 (38.22%), Postives = 130/225 (57.78%), Query Frame = 0


Query: 36   PYASDVGSLMYAMLCTRLDICYAVGIVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYG 95
            P  S +G LMY MLCTR D+  AV I+SRY S    + W  +K +L+YL+ T D   ++ 
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 96   ---AKDLILTGYTDSDFQIDKDSRKSTSGLVFTL-NGGAVVWRSIKQGCIADSTMEAEYV 155
               A +  + GY DSD+   +  RKST+G +F + +   + W + +Q  +A S+ EAEY+
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299

Query: 156  AAYEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 215
            A +EA +EA+WL+  L  + +   +  PI +Y DN G ++ +  P  HKR KHI+ KYH 
Sbjct: 1300 ALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHF 1359

Query: 216  IREIVQRGDVIITKIASEHNIADPYTKTLTAKLFEGHLESLDLRD 257
             RE VQ   + +  I +E+ +AD +TK L A  F      ++LRD
Sbjct: 1360 AREQVQNNVICLEYIPTENQLADIFTKPLPAARF------VELRD 1396

[Close]

BLAST of Cmc07g0185441.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-27
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 32  MRRIPYASDVGSLMYAMLCTRLDICYAVGIVSRYKSNPGLDQWTAVKIILKYLRRTRDYM 91
           M+ +PY S VG++MY M+ TR D+  AVG++S++ S+P    W A+K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 92  FVY-GAKDLILTGYTDSDFQIDKDSRKSTSGLVFTLNGGAVVWRSIKQGCIADSTMEAEY 151
             +  A    L GY+D+D+  D +SR+STSG +F LNGG V WRS KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 152 VAAYEAAKEAVWL 164
           +A  EA +EAVWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc07g0185441.1 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-09
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 37  YASDVGSLMYAMLCTRLDICYAVGIVSRYKSNPGLDQWTAVKIILKYLRRTRDY-MFVYG 96
           + S VG+L Y  L TR DI YAV IV +    P L  +  +K +L+Y++ T  + ++++ 
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 97  AKDLILTGYTDSDFQIDKDSRKSTSGLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYE 156
              L +  + DSD+     +R+ST+G    L    + W + +Q  ++ S+ E EY A   
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

Query: 157 AAKEAVW 163
            A E  W
Sbjct: 220 TAAELTW 225

[Close]

BLAST of Cmc07g0185441.1 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 6.1e-138
Identity = 245/260 (94.23%), Postives = 251/260 (96.54%), Query Frame = 0


Query: 1    MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
            MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMYAMLCTR DICYAVG
Sbjct: 976  MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVG 1035

Query: 61   IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
            IVSRY+SNPGLD WTAVKI+LKYLRRTRDYM VYGAKDLILTGYTDSDFQ DKDSRKSTS
Sbjct: 1036 IVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS 1095

Query: 121  GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
            G VFTLNGGAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWLRKFLHDLEVVPNMNLPI
Sbjct: 1096 GSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPI 1155

Query: 181  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
            TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TKTL
Sbjct: 1156 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTL 1215

Query: 241  TAKLFEGHLESLDLRDMYIR 261
            TAK+FEGHLESL LRDMYIR
Sbjct: 1216 TAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc07g0185441.1 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 6.1e-138
Identity = 245/260 (94.23%), Postives = 251/260 (96.54%), Query Frame = 0


Query: 1    MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
            MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMYAMLCTR DICYAVG
Sbjct: 850  MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVG 909

Query: 61   IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
            IVSRY+SNPGLD WTAVKI+LKYLRRTRDYM VYGAKDLILTGYTDSDFQ DKDSRKSTS
Sbjct: 910  IVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS 969

Query: 121  GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
            G VFTLNGGAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWLRKFLHDLEVVPNMNLPI
Sbjct: 970  GSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPI 1029

Query: 181  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
            TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TKTL
Sbjct: 1030 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTL 1089

Query: 241  TAKLFEGHLESLDLRDMYIR 261
            TAK+FEGHLESL LRDMYIR
Sbjct: 1090 TAKVFEGHLESLGLRDMYIR 1109

[Close]

BLAST of Cmc07g0185441.1 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.4e-137
Identity = 245/260 (94.23%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1   MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
           MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMY MLCTR DICYAVG
Sbjct: 41  MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDICYAVG 100

Query: 61  IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
           IVSRY+SNPGLD WTAVKIILKYLRRTRDYM VYGAKDLILTGYTDSDFQ DKDSRKSTS
Sbjct: 101 IVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS 160

Query: 121 GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
           G VFTLNGGAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWLRKFLHDLEVVPNMNLPI
Sbjct: 161 GSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPI 220

Query: 181 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
           TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TKTL
Sbjct: 221 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTL 280

Query: 241 TAKLFEGHLESLDLRDMYIR 261
           TAK+FEGHLESL LRDMYIR
Sbjct: 281 TAKVFEGHLESLGLRDMYIR 300

[Close]

BLAST of Cmc07g0185441.1 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.3e-136
Identity = 243/260 (93.46%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1    MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
            MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMYAMLCTR DICYAVG
Sbjct: 976  MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVG 1035

Query: 61   IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
            IVSRY+SNPGLD WTAVKIILKYLRRTRDYM VYGAKDLILTGYT+SDFQ DKDSRKSTS
Sbjct: 1036 IVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTNSDFQTDKDSRKSTS 1095

Query: 121  GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
              VFTLNGGAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWL+KFLHDLEVVPNMNLPI
Sbjct: 1096 RSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLKKFLHDLEVVPNMNLPI 1155

Query: 181  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
            TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TKTL
Sbjct: 1156 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTL 1215

Query: 241  TAKLFEGHLESLDLRDMYIR 261
            TAK+FEGHLESL LRDMYIR
Sbjct: 1216 TAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc07g0185441.1 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 5.7e-136
Identity = 243/260 (93.46%), Postives = 248/260 (95.38%), Query Frame = 0


Query: 1   MQNSKKGLLPFRYGVHLSKEQCPKTPQEVEDMRRIPYASDVGSLMYAMLCTRLDICYAVG 60
           MQNSKKGLLPFR+GVHLSKEQ PKTPQEVEDMRRIPYAS VGSLMYAMLCTR DICYAVG
Sbjct: 137 MQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVG 196

Query: 61  IVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGAKDLILTGYTDSDFQIDKDSRKSTS 120
           IVSRY+SNPGLD WT VKIILKYLRRTRDYM VYGAKDLILTGYTDSDFQ DKDSRKSTS
Sbjct: 197 IVSRYQSNPGLDHWTTVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTS 256

Query: 121 GLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYEAAKEAVWLRKFLHDLEVVPNMNLPI 180
           G VFTLN GAVVWRSIKQGCIADSTMEAEYVAA EAAKEAVWLRKFLHDLEVVPNMNLPI
Sbjct: 257 GSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPI 316

Query: 181 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIITKIASEHNIADPYTKTL 240
           TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVI+TKIASEHNIADP+TK L
Sbjct: 317 TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKIL 376

Query: 241 TAKLFEGHLESLDLRDMYIR 261
           TAK+FEGHLESL LRDMYIR
Sbjct: 377 TAKVFEGHLESLGLRDMYIR 396

[Close]

BLAST of Cmc07g0185441.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 108.6 bits (270), Expect = 7.6e-24
Identity = 64/179 (35.75%), Postives = 100/179 (55.87%), Query Frame = 0


Query: 37  YASDVGSLMYAMLCTRLDICYAVGIVSRYKSNPGLDQWTAVKIILKYLRRTRDYMFVYGA 96
           Y   +G LMY  + TRLDI +AV  +S++   P L    AV  IL Y++ T      Y +
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 97  K-DLILTGYTDSDFQIDKDSRKSTSGLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYE 156
           + ++ L  ++D+ FQ  KD+R+ST+G    L    + W+S KQ  ++ S+ EAEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 157 AAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 215
           A  E +WL +F  +L++   ++ P  L+CDN+ A+  +     H+R KHIE   H +RE
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc07g0185441.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-10
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 37  YASDVGSLMYAMLCTRLDICYAVGIVSRYKSNPGLDQWTAVKIILKYLRRTRDY-MFVYG 96
           + S VG+L Y  L TR DI YAV IV +    P L  +  +K +L+Y++ T  + ++++ 
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 97  AKDLILTGYTDSDFQIDKDSRKSTSGLVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAYE 156
              L +  + DSD+     +R+ST+G    L    + W + +Q  ++ S+ E EY A   
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

Query: 157 AAKEAVW 163
            A E  W
Sbjct: 220 TAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc07g0185441.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	1.3e-137	94.23	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	1.3e-137	94.23	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	2.8e-137	94.23	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	6.9e-136	93.46	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061170.1	1.2e-135	93.46	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0185441.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.0e-57	46.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.9e-36	38.22	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	5.5e-27	47.37	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P92519	5.1e-09	31.50	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc07g0185441.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	6.1e-138	94.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	6.1e-138	94.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7TKM4	1.4e-137	94.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5A7T2V9	3.3e-136	93.46	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5A7V1F5	5.7e-136	93.46	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]

BLAST of Cmc07g0185441.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.6e-24	35.75	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.7e-10	31.50	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 114..217
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 114..217
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 102..243 e-value: 4.49189E-54 score: 169.571

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0185441	Cmc07g0185441	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0185441.1-exon	Cmc07g0185441.1-exon-CMiso1.1chr07:3499777..3500559	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0185441.1-cds	Cmc07g0185441.1-cds-CMiso1.1chr07:3499777..3500559	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0185441.1	Cmc07g0185441.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding