Cmc06g0168791.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc06g0168791.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr06: 22805805 .. 22809091 (+)
Sequence length2080
RNA-Seq ExpressionCmc06g0168791.1
SyntenyCmc06g0168791.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAACGCACAAGTCTTTTGTTAAATAAACAAAATTACACATTCCAATCCATGGCTACACAAACCCAACAAAAAACAAAATAACTCAGATCAAAACCTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATTCCCACACAAGATATCATCTCTCGTCGATGGCTTGTAATTCAACGGGTTTAAGCTGTAAATGCAAATGTTTGACTGTCTTGATTTTATCGATATTTCTCCAGATGTGCTTCTGTATCCAGGAACGTTGCAAGACGACGATGAACTTCCCATTAAACTCGCTTGGCAGAACGACACCATTGCCGAATCCTCTGCACATCGGATTCCGTCCACCGAAGGTATTTCCAACTTGTACACTCCGTATTTGTTTGTTGTTCTGTTCACTGAGAACGCTATCTGCTCCGCCGTACGCGGCGTTTCTGCTTTTAATTTGCAGTCGATTCGAACTTCTGCACCTGTTTGTTTTCCCCCCATCATTTATAATAAACAAACACACTCAGTGCGCCACGACTATCAATTTTTTCAATCCCTCTTTCAATAATTCAATGCTTTTTTTAAATTAGTTTACTAAAATATATTCAAACCCAACCCATAATATCAAAGCTTAGAAAAGGGAAAACAAAAAGTTCAAACTCAAAATGATAAACCTACACAGCATAATTACAAAAACAGATGCTAGTTTTGACCATTTGAATTCTAGCTCATCTTGAAATTAGGACTTAAACTTTACCTTGACCTTACTCGAGTAAATATGTAGTGTGAAGAAATGGTATCGGGGATTACCTGATAAGAAGTAACTGTGTTTGGAGAAGGTGTTGTTGGAGCAGGTGTCACAATAAACAAGACCCATGACAGTAATCTGAGAATATATTGTTCTTGGCGGGTGAGAATGAGCAGCCTGAATTTCAAACAGAAAGGAACTTGGAACCAAGGAGGCTAAGACAAAGAGTAGAATAAGATTCATGGCTATATTACGGAAGATAAGAGAGAAGCCGCTTTTTTCTTCTTTGAAAGAAGTGCCTATCTAATGTTCAATGCATATCAGGATATGTAATGAAGGGTGGGAAGAGTAGTAATGTAAGTAACGAGCTTCACTGCTTCAGTAGTTGGTGGGTAAGGATATAACTGAAAGCGAAGTAAAAAAAGTGAAGGTCATTTAACATTTTCATAAGAAACAAAGACATGTGATAGTCTTTTGTCATTCTGCATGTGAACTTGATGTGTAGGAAAGAGAAGAAATTAGATTCTCTTGGCAGAATTATTGCTGATACTGCTCCTTGATTCGAGGGTCTAACCCAGCTAAACACTATTAATAGAGCTACCTATTTCAAAATAGGAGCCAACCAACACACGCGGAGTGAATCTCGTTGCATTGTTTTGGGAAGATTTACATCCATATCCTGTATTCTTTTTAGGTGTCAATTCTAAGTCTCTCTTGTAAAAAGTAAAGGCTGCTTTTACATCTCAATTGCTTGAAGGAGATACAGACAGCAATTTGCTTCAAGTCTTCAAGCTTCGATTGGTGCCAATTATGGGGTTGTAGTCTTAGCCAATGTCTATGGAGCCAAGGAAACATAACCAGGCAATGAGTATCAGAGGATGAAGAAATCACACCATTGAGATCGAATGAAACAGTATTTGGTTTGAACAACTAAACTTGACCCCAAGTTATTATTTAACAATTGCAGCAATCCCCAAAATGCACAGGTCCAAAAACGTGCATGATGGGGGAGAAAATATTGAGTGGTGGAGATTGAAAGCTGATCGAAGTATAGAATCTGAGCCACTAAAAAAAGGACTATGCAGCTCGTGATGTAGTGTGGGTTTAAGGGATGGCGATCCAGATTTTGGACCCAGTACCTTCTGCAGAAAAGTGATGTTAAAGTGTAAATTGGAGCAATCTGAGCGGTTGAGAATGCTTGTTGGTCGAGCCTCCTCCAGCAAAACAGGGCCCTATAATGCTTATGCAAATTGCCCCCAGCAGTACAAAGAAACTTTTCAAGTGTTGGAGCCTTTGAAGATTGAAAAATGACAGCAGGCTATTTGGTTGCAATATATGGTGATGGCTTATTTCATTGCTGCCCCGGTGCGTGATTCACCCTGTTGACTCGATTACGGTAAAAATGCTATAAATTATTTTAAGGCATGTTGGAATATATTGTCGTACATATAGAGTTTGTCTCGATGAATATTTCAGTACACCTCGTAGATGGGATAAAATTAAACCACCAAAATTGTGAATAAGTGTTTCTCACACGATTAAGGTTATTTACTTTATTTTTGAACCACAATGTAAGATGTTTGGATACTCACTGTACGACTATTTATCATTGCCAAATTCTCGAAATCTGGTGTTGGGAAATGAAAATTCATATCTGAGGTGGTTTGTTTTCGCAGGATTTTAATATTTTCTTAGAATGAGCATTTTAATTATTGTATTTGTTTTGCTGATATATAATAAGTCCAAACATTTGGAGCATGAGTTTTTGAGATTTTCATATCGAGAGGACCTTCTTTTAGTTATTCTACCCTTCTTTTTCTTTTCTTTTCTTTTTTTTCTCTCTCTTACTAGATGGATACTGCGTGCATGGTGTTGTCTATGGCATGTTGTCGGGACTGCATGTTCAAGCAAACCCTTTATATTACACATTTTTTTTCTAATACTATTGGTAGTGGGAAACTACTCACCATTTTCATTTGCAAGAGCCACATCCACTAAAAATATTATGATATACTATAGGGGTAAGACTAGTTGTCACTTGTCAGTTCTTAATTAGATTTGTATGCTATCAAAGCTAGTGCTCTCTTGCTCACTAGCCTACGACAATCTTTCTCTTAAGATGTTTTAAAACGTTTGTGAAAAATTTATCTAACTTGTTTCTTAAAATTGTTTCCTCTAAAACAGGGGTGAATGTTGCGAGATATGCTCATTTTGCCACAACTATCCAAATTTGTATTGGCAACTTGCTTGGAAGGTGAGAGCAAGTGAACACAAAGTTGTTTTATGAGCTAAGGAAGGTGTGATTATGACACATAGCATGTGGTTAATTTTGAAGATAATTTTTTTGTGATAAAATTTAAATTGGAACACAATTTCATTTGACCATAAAGGAAAGAAATAGTTACTAACACTACTCAAAATAATAATGAATATAAATAATGTGAAGTACAAATTTTGAATGAATATACTTTTAAATGAATTTATATGGTAAATATTTGATAT

mRNA sequence

TTAACGCACAAGTCTTTTGTTAAATAAACAAAATTACACATTCCAATCCATGGCTACACAAACCCAACAAAAAACAAAATAACTCAGATCAAAACCTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATTCCCACACAAGATATCATCTCTCGTCGATGGCTTGTAATTCAACGGGTTTAAGCTGTAAATGCAAATGTTTGACTGTCTTGATTTTATCGATATTTCTCCAGATGTGCTTCTGTATCCAGGAACGTTGCAAGACGACGATGAACTTCCCATTAAACTCGCTTGGCAGAACGACACCATTGCCGAATCCTCTGCACATCGGATTCCGTCCACCGAAGTGTGAAGAAATGGTATCGGGGATTACCTGATAAGAAGTAACTGTGTTTGGAGAAGGTGTTGTTGGAGCAGGTGTCACAATAAACAAGACCCATGACAGTAATCTGAGAATATATTGTTCTTGGCGGGTGAGAATGAGCAGCCTGAATTTCAAACAGAAAGGAACTTGGAACCAAGGAGGCTAAGACAAAGAGTAGAATAAGATTCATGGCTATATTACGGAAGATAAGAGAGAAGCCGCTTTTTTCTTCTTTGAAAGAAGTGCCTATCTAATGTTCAATGCATATCAGGATATGTAATGAAGGGTGGGAAGAGTAGTAATGTAAGTAACGAGCTTCACTGCTTCAGTAGTTGGTGGGTAAGGATATAACTGAAAGCGAAGTAAAAAAAGTGAAGGTCATTTAACATTTTCATAAGAAACAAAGACATGTGATAGTCTTTTGTCATTCTGCATGTGAACTTGATGTGTAGGAAAGAGAAGAAATTAGATTCTCTTGGCAGAATTATTGCTGATACTGCTCCTTGATTCGAGGGTCTAACCCAGCTAAACACTATTAATAGAGCTACCTATTTCAAAATAGGAGCCAACCAACACACGCGGAGTGAATCTCGTTGCATTGTTTTGGGAAGATTTACATCCATATCCTGTATTCTTTTTAGGTGTCAATTCTAAGTCTCTCTTGTAAAAAGTAAAGGCTGCTTTTACATCTCAATTGCTTGAAGGAGATACAGACAGCAATTTGCTTCAAGTCTTCAAGCTTCGATTGGTGCCAATTATGGGGTTGTAGTCTTAGCCAATGTCTATGGAGCCAAGGAAACATAACCAGGCAATGAGTATCAGAGGATGAAGAAATCACACCATTGAGATCGAATGAAACAGTATTTGGTTTGAACAACTAAACTTGACCCCAAGTTATTATTTAACAATTGCAGCAATCCCCAAAATGCACAGGTCCAAAAACGTGCATGATGGGGGAGAAAATATTGAGTGGTGGAGATTGAAAGCTGATCGAAGTATAGAATCTGAGCCACTAAAAAAAGGACTATGCAGCTCGTGATGTAGTGTGGGTTTAAGGGATGGCGATCCAGATTTTGGACCCAGTACCTTCTGCAGAAAAGTGATGTTAAAGTGTAAATTGGAGCAATCTGAGCGGTTGAGAATGCTTGTTGGTCGAGCCTCCTCCAGCAAAACAGGGCCCTATAATGCTTATGCAAATTGCCCCCAGCAGTACAAAGAAACTTTTCAAGTGTTGGAGCCTTTGAAGATTGAAAAATGACAGCAGGCTATTTGGTTGCAATATATGGTGATGGCTTATTTCATTGCTGCCCCGGTGCGTGATTCACCCTGTTGACTCGATTACGGGGTGAATGTTGCGAGATATGCTCATTTTGCCACAACTATCCAAATTTGTATTGGCAACTTGCTTGGAAGGTGAGAGCAAGTGAACACAAAGTTGTTTTATGAGCTAAGGAAGGTGTGATTATGACACATAGCATGTGGTTAATTTTGAAGATAATTTTTTTGTGATAAAATTTAAATTGGAACACAATTTCATTTGACCATAAAGGAAAGAAATAGTTACTAACACTACTCAAAATAATAATGAATATAAATAATGTGAAGTACAAATTTTGAATGAATATACTTTTAAATGAATTTATATGGTAAATATTTGATAT

Coding sequence (CDS)

ATGCAAATGTTTGACTGTCTTGATTTTATCGATATTTCTCCAGATGTGCTTCTGTATCCAGGAACGTTGCAAGACGACGATGAACTTCCCATTAAACTCGCTTGGCAGAACGACACCATTGCCGAATCCTCTGCACATCGGATTCCGTCCACCGAAGTGTGA

Protein sequence

MQMFDCLDFIDISPDVLLYPGTLQDDDELPIKLAWQNDTIAESSAHRIPSTEV
Homology
[Close]
BLAST of Cmc06g0168791.1 vs. NCBI nr
Match: KAG7017844.1 (hypothetical protein SDJN02_19710, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 1  MQMFDCLDFIDISPDVLLYPGTLQDDDELPIKLAWQNDTIAESSAHRIPSTE 53
          MQ FDCLD I+ISPDV+LYPGTLQ DDELPIKLAWQND I ESSAHRIPS E
Sbjct: 1  MQTFDCLDLIEISPDVVLYPGTLQADDELPIKLAWQNDAIEESSAHRIPSIE 52

[Close]
BLAST of Cmc06g0168791.1 vs. ExPASy TrEMBL
Match: A0A2N9HP17 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41365 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.2e-09
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 1  MQMFDCLDFIDISPDVLLYPGTLQDDDELPIKLAWQNDTIAESSAHRIPSTE 53
          MQ   CLD I IS DV+L PG L ++D L IKLAWQ DT AESSAH IPST+
Sbjct: 1  MQRLACLDLIAISSDVVLKPGILHEEDVLHIKLAWQEDTTAESSAHLIPSTD 52

The following BLAST results are available for this feature:
BLAST of Cmc06g0168791.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017844.13.2e-1684.62hypothetical protein SDJN02_19710, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cmc06g0168791.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc06g0168791.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9HP179.2e-0965.38Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41365 PE=4 SV=1[more]
BLAST of Cmc06g0168791.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc06g0168791Cmc06g0168791gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc06g0168791.1-exonCmc06g0168791.1-exon-CMiso1.1chr06:22805805..22806206exon
Cmc06g0168791.1-exonCmc06g0168791.1-exon-CMiso1.1chr06:22806626..22807985exon
Cmc06g0168791.1-exonCmc06g0168791.1-exon-CMiso1.1chr06:22808774..22809091exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc06g0168791.1-five_prime_utrCmc06g0168791.1-five_prime_utr-CMiso1.1chr06:22805805..22806049five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc06g0168791.1-cdsCmc06g0168791.1-cds-CMiso1.1chr06:22806050..22806206CDS
Cmc06g0168791.1-cdsCmc06g0168791.1-cds-CMiso1.1chr06:22806626..22806630CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc06g0168791.1-three_prime_utrCmc06g0168791.1-three_prime_utr-CMiso1.1chr06:22806631..22807985three_prime_UTR
Cmc06g0168791.1-three_prime_utrCmc06g0168791.1-three_prime_utr-CMiso1.1chr06:22808774..22809091three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc06g0168791.1Cmc06g0168791.1-proteinpolypeptide