Cmc05g0137501.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc05g0137501.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr05: 21028536 .. 21029126 (-)
Sequence length	591
RNA-Seq Expression	Cmc05g0137501.1
Synteny	Cmc05g0137501.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTTTGCATTGACAACAAAGAGCTGAACAAGGTGACAGTCAAGAACCGCTACCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTACAAGGAGCCACAGTCTTTTCTCAGATCGACCTGCGATCAGGCTACCACCAATTGAGGATCAGGGATAGTGATATTTCTAAGACCGCTTTCCATTTCAGATATGGGCATTACGAGTTCATTGTGATGTCTTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAAAGTGTTTAAGGATTTCTTAGACACGTTTGTTATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGTACACCAAGTTCTCCAAGTGTGAGTTCTGGTTGAAGAAGGTGACTTTTCTCAATCATGTGGTTTCCAGTGAGAGAGTTTATGTGGACCCAGCAAAGATCGAAGTTGTTACCAGTTGGCCTCGACCGTCTACATTAGTGGGGTTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAAGAGGTTCGTGGAAGACTTCTCTCGTATAG

mRNA sequence

ATGCGCCTTTGCATTGACAACAAAGAGCTGAACAAGGTGACAGTCAAGAACCGCTACCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTACAAGGAGCCACAGTCTTTTCTCAGATCGACCTGCGATCAGGCTACCACCAATTGAGGATCAGGGATAGTGATATTTCTAAGACCGCTTTCCATTTCAGATATGGGCATTACGAGTTCATTGTGATGTCTTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAAAGTGTTTAAGGATTTCTTAGACACGTTTGTTATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGTACACCAAGTTCTCCAAGTGTGAGTTCTGGTTGAAGAAGGTGACTTTTCTCAATCATGTGGTTTCCAGTGAGAGAGTTTATGTGGACCCAGCAAAGATCGAAGTTGTTACCAGTTGGCCTCGACCGTCTACATTAGTGGGGTTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAAGAGGTTCGTGGAAGACTTCTCTCGTATAG

Coding sequence (CDS)

ATGCGCCTTTGCATTGACAACAAAGAGCTGAACAAGGTGACAGTCAAGAACCGCTACCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTACAAGGAGCCACAGTCTTTTCTCAGATCGACCTGCGATCAGGCTACCACCAATTGAGGATCAGGGATAGTGATATTTCTAAGACCGCTTTCCATTTCAGATATGGGCATTACGAGTTCATTGTGATGTCTTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAAAGTGTTTAAGGATTTCTTAGACACGTTTGTTATAGTTTTCATTGACGACATTTTGATTTACTCCAAGACTGAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGTACACCAAGTTCTCCAAGTGTGAGTTCTGGTTGAAGAAGGTGACTTTTCTCAATCATGTGGTTTCCAGTGAGAGAGTTTATGTGGACCCAGCAAAGATCGAAGTTGTTACCAGTTGGCCTCGACCGTCTACATTAGTGGGGTTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAAGAGGTTCGTGGAAGACTTCTCTCGTATAG

Protein sequence

MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTAFHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEEHLHQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTLVGFVVSWVWQVTTRGSWKTSLV

Homology

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BLAST of Cmc05g0137501.1 vs. NCBI nr
Match: KAA0040880.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 372.1 bits (954), Expect = 3.0e-99
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
           MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA
Sbjct: 431 MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 490

Query: 61  FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEEHLHQV 120
           F FRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEEHLHQV
Sbjct: 491 FRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEEHLHQV 550

Query: 121 LETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTLVGFVVS 180
           LETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTLVGFVVS
Sbjct: 551 LETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTLVGFVVS 610

Query: 181 WVWQ 185
           WVWQ
Sbjct: 611 WVWQ 614

[Close]

BLAST of Cmc05g0137501.1 vs. NCBI nr
Match: KAA0045284.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 164/191 (85.86%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
           MRLCID +ELNKVTVKNRYPLPRIDDLFDQLQGATVFS+IDLRSGYHQLR+RDSDI KTA
Sbjct: 589 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRVRDSDIPKTA 648

Query: 61  FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT----EEH 120
           F  RYG+YEFIVMSFGLTNAPAVFMDLMN VFKDFLD+F+IVFIDDILIYSKT    EEH
Sbjct: 649 FRSRYGYYEFIVMSFGLTNAPAVFMDLMNMVFKDFLDSFIIVFIDDILIYSKTEAEHEEH 708

Query: 121 LHQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTLVG 180
           LHQVLETLR+NKLY KFSKCEFWLKKVTFL HVVSSE V VDPAKIE VT+WPR   L  
Sbjct: 709 LHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRRLRLAR 768

Query: 181 FVVSWVWQVTT 188
           FVVSWVWQVTT
Sbjct: 769 FVVSWVWQVTT 779

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BLAST of Cmc05g0137501.1 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 316.2 bits (809), Expect = 1.9e-82
Identity = 158/178 (88.76%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
           MRLCID +ELNKVTVKNRYPLPRIDDLFDQLQGATVFS+IDLRSGYHQLRIRDSDI KTA
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT----EEH 120
           F  RYGHYEFIVMSFGLTNAPAVFMDLMN+VFKDFLD+FVIVFIDDILIYSKT    EEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTL 175
           LHQVLETLRANKLY KFSKCEFWL+KVTFL HVVSSE V VDPAKIE VT+WPRPST+
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTV 778

[Close]

BLAST of Cmc05g0137501.1 vs. NCBI nr
Match: KAA0058812.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 3.3e-82
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
           MRLCID +ELNKVT+KNRYPLPRIDDLFDQLQGATVFS+IDLRSGYHQLRIRD DI KTA
Sbjct: 528 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 587

Query: 61  FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT----EEH 120
           FH RYGHYEF+VMSFGLTNAPAVFMDLMN+VFKDF+D+FVIVFIDDILIYSKT    EEH
Sbjct: 588 FHSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEH 647

Query: 121 LHQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTL 175
           LHQVLETLRANKLY KFSKCEFWL+KVTFL HVVSSE V VDPAKIE VT+WPRPST+
Sbjct: 648 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTV 705

[Close]

BLAST of Cmc05g0137501.1 vs. NCBI nr
Match: KAA0063946.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 4.3e-82
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1    MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
            MRLCID +ELNKVTVKNRYPLPRIDDLFDQLQGATVFS+IDLRSGYHQLRIRDSDI KTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT----EEH 120
            F  RYGHYEF+VMSFGLTNAPAVFMDLMN+VFKDFLD+FVIVFIDDILIYSKT    EEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTL 175
            LHQVLETLRANKLY KFSKCEFWL+KVTFL HVVSSE V VDPAKIE VT+WPRPST+
Sbjct: 987  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTV 1044

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-32
Identity = 67/175 (38.29%), Postives = 110/175 (62.86%), Query Frame = 0


Query: 2   RLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTAF 61
           R+ ID ++LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    +SKTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  HFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT-EEHLHQ- 121
             ++GHYE++ M FGL NAPA F   MN + +  L+   +V++DDI+++S + +EHL   
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 --VLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPS 173
             V E L    L  +  KCEF  ++ TFL HV++ + +  +P KIE +  +P P+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPT 437

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.3e-32
Identity = 66/125 (52.80%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 1   MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
           +R+CID + L KVT+KN+YP+PR+DDLFD+L  AT F+++DLRSGY Q+RI   D  KT 
Sbjct: 6   LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61  FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEEHLHQV 120
              RYG +EF VM FGLTNA A F +LMN V  ++LD FV+V++DD+++Y+     LH+ 
Sbjct: 66  CVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEH 125

Query: 121 LETLR 126
           ++ LR
Sbjct: 126 IKHLR 130

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.6e-32
Identity = 67/175 (38.29%), Postives = 109/175 (62.29%), Query Frame = 0


Query: 2   RLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTAF 61
           R+ ID ++LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  ISKTAF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  HFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT-EEHLHQ- 121
             + GHYE++ M FGL NAPA F   MN + +  L+   +V++DDI+I+S +  EHL+  
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 --VLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPS 173
             V   L    L  +  KCEF  K+  FL H+V+ + +  +P K++ + S+P P+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPT 436

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-30
Identity = 71/177 (40.11%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 2   RLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTAF 61
           RLC+D + LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  HFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEE----HL 121
               G YE+ VM FGL NAP+ F   M   F+D    FV V++DDILI+S++ E    HL
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 766

Query: 122 HQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTL 175
             VLE L+   L  K  KC+F  ++  FL + +  +++     K   +  +P P T+
Sbjct: 767 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 821

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-30
Identity = 71/177 (40.11%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 2   RLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTAF 61
           RLC+D + LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  HFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEE----HL 121
               G YE+ VM FGL NAP+ F   M   F+D    FV V++DDILI+S++ E    HL
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 792

Query: 122 HQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTL 175
             VLE L+   L  K  KC+F  ++  FL + +  +++     K   +  +P P T+
Sbjct: 793 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 847

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy TrEMBL
Match: A0A5A7TC11 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00390 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.4e-99
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
           MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA
Sbjct: 431 MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 490

Query: 61  FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEEHLHQV 120
           F FRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEEHLHQV
Sbjct: 491 FRFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKTEEHLHQV 550

Query: 121 LETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTLVGFVVS 180
           LETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTLVGFVVS
Sbjct: 551 LETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTLVGFVVS 610

Query: 181 WVWQ 185
           WVWQ
Sbjct: 611 WVWQ 614

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy TrEMBL
Match: A0A5A7TQ85 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00410 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.9e-86
Identity = 164/191 (85.86%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
           MRLCID +ELNKVTVKNRYPLPRIDDLFDQLQGATVFS+IDLRSGYHQLR+RDSDI KTA
Sbjct: 589 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRVRDSDIPKTA 648

Query: 61  FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT----EEH 120
           F  RYG+YEFIVMSFGLTNAPAVFMDLMN VFKDFLD+F+IVFIDDILIYSKT    EEH
Sbjct: 649 FRSRYGYYEFIVMSFGLTNAPAVFMDLMNMVFKDFLDSFIIVFIDDILIYSKTEAEHEEH 708

Query: 121 LHQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTLVG 180
           LHQVLETLR+NKLY KFSKCEFWLKKVTFL HVVSSE V VDPAKIE VT+WPR   L  
Sbjct: 709 LHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRRLRLAR 768

Query: 181 FVVSWVWQVTT 188
           FVVSWVWQVTT
Sbjct: 769 FVVSWVWQVTT 779

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.4e-83
Identity = 158/178 (88.76%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
           MRLCID +ELNKVTVKNRYPLPRIDDLFDQLQGATVFS+IDLRSGYHQLRIRDSDI KTA
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT----EEH 120
           F  RYGHYEFIVMSFGLTNAPAVFMDLMN+VFKDFLD+FVIVFIDDILIYSKT    EEH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTL 175
           LHQVLETLRANKLY KFSKCEFWL+KVTFL HVVSSE V VDPAKIE VT+WPRPST+
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTV 778

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy TrEMBL
Match: A0A5A7USG7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002890 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.6e-82
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
           MRLCID +ELNKVT+KNRYPLPRIDDLFDQLQGATVFS+IDLRSGYHQLRIRD DI KTA
Sbjct: 528 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 587

Query: 61  FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT----EEH 120
           FH RYGHYEF+VMSFGLTNAPAVFMDLMN+VFKDF+D+FVIVFIDDILIYSKT    EEH
Sbjct: 588 FHSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEH 647

Query: 121 LHQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTL 175
           LHQVLETLRANKLY KFSKCEFWL+KVTFL HVVSSE V VDPAKIE VT+WPRPST+
Sbjct: 648 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTV 705

[Close]

BLAST of Cmc05g0137501.1 vs. ExPASy TrEMBL
Match: A0A5A7VBY3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00920 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.1e-82
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1    MRLCIDNKELNKVTVKNRYPLPRIDDLFDQLQGATVFSQIDLRSGYHQLRIRDSDISKTA 60
            MRLCID +ELNKVTVKNRYPLPRIDDLFDQLQGATVFS+IDLRSGYHQLRIRDSDI KTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FHFRYGHYEFIVMSFGLTNAPAVFMDLMNKVFKDFLDTFVIVFIDDILIYSKT----EEH 120
            F  RYGHYEF+VMSFGLTNAPAVFMDLMN+VFKDFLD+FVIVFIDDILIYSKT    EEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLRANKLYTKFSKCEFWLKKVTFLNHVVSSERVYVDPAKIEVVTSWPRPSTL 175
            LHQVLETLRANKLY KFSKCEFWL+KVTFL HVVSSE V VDPAKIE VT+WPRPST+
Sbjct: 987  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTV 1044

[Close]

BLAST of Cmc05g0137501.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-05
Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 0


Query: 116 HLHQVLETLRANKLYTKFSKCEFWLKKVTFL--NHVVSSERVYVDPAKIEVVTSWPRP 172
           HL  VL+    ++ Y    KC F   ++ +L   H++S E V  DPAK+E +  WP P
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

The following BLAST results are available for this feature:

BLAST of Cmc05g0137501.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040880.1	3.0e-99	99.46	pol protein [Cucumis melo var. makuwa]	[more]
KAA0045284.1	1.4e-85	85.86	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK01306.1	1.9e-82	88.76	pol protein [Cucumis melo var. makuwa]	[more]
KAA0058812.1	3.3e-82	87.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063946.1	4.3e-82	88.20	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0137501.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.5e-32	38.29	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P31843	4.3e-32	52.80	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P20825	5.6e-32	38.29	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	2.3e-30	40.11	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.3e-30	40.11	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc05g0137501.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TC11	1.4e-99	99.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7TQ85	6.9e-86	85.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5D3BSV9	9.4e-83	88.76	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]
A0A5A7USG7	1.6e-82	87.08	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A5A7VBY3	2.1e-82	88.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]

BLAST of Cmc05g0137501.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.0e-05	36.21	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..146 e-value: 5.2E-20 score: 71.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..150 e-value: 4.0E-59 score: 201.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 4.0E-59 score: 201.5
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..174
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..174
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..150 e-value: 8.65106E-75 score: 220.93
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..174

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc05g0137501	Cmc05g0137501	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0137501.1-exon	Cmc05g0137501.1-exon-CMiso1.1chr05:21028536..21029126	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc05g0137501.1-cds	Cmc05g0137501.1-cds-CMiso1.1chr05:21028536..21029126	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc05g0137501.1	Cmc05g0137501.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding