Cmc04g0110671.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0110671.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr04: 29924110 .. 29924802 (-)
Sequence length	594
RNA-Seq Expression	Cmc04g0110671.1
Synteny	Cmc04g0110671.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACACGAGTCTGATCTTGTGTGTCGCAAAAGCACACGAATGGACAAGCGAACATTCGCAATTCTATGCCACTTACTTAGGACTGTATCTGGTCTTTCATCGACAGAGATTGTCGATGTCGAGGAAATGGTTGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCAGTGAGACAGTATCTCGATATTTTAACATCGTATTGTTCGTTGTGGTTCGACTGTATGAGGTGTTTATAAAGAGATCTGCTCCGGTAACAAACAACTACAATGATCAACGTTGGAAATGTTTCGAGGTGGCAATGATAGAAGTTTACTGTATTTGACCTTTACGTACGTCGCACTTATTTCAGTATGTTTATTTCAACCTGCAGAATTGCTTTGGTGCGTTAGACAAGACGTATATAAAGGTCAACGTCCCTGCAGGAGATCGGTCTACATTCAGAACGTGTAAGGGGGATATTGCCACAAACGTTCTGGGGGTGTGCGACACGAAAGGTGATTTCGTTTATGTCCTCGCCGGTTGGAAAGGATCCGCAGCAGACTCGCGGATTCTACGTGATGCCCTTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTATTTTTTCCAAAACAACGATGCTTCCTACTTACGTATTCAAAGCGCTTAA

mRNA sequence

ATGATACACGAGTCTGATCTTGTGTGTCGCAAAAGCACACGAATGGACAAGCGAACATTCGCAATTCTATGCCACTTACTTAGGACTGTATCTGGTCTTTCATCGACAGAGATTGTCGATGTCGAGGAAATGGTTGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCAGTGAGACAGTATCTCGATATTTTAACATCGTATTGTTCGTTGTGGTTCGACTGTATGAGGTGTTTATAAAGAGATCTGCTCCGTATGTTTATTTCAACCTGCAGAATTGCTTTGGTGCGTTAGACAAGACGTATATAAAGGTCAACGTCCCTGCAGGAGATCGGTCTACATTCAGAACGTGTAAGGGGGATATTGCCACAAACGTTCTGGGGGTGTGCGACACGAAAGGTGATTTCGTTTATGTCCTCGCCGGTTGGAAAGGATCCGCAGCAGACTCGCGGATTCTACGTGATGCCCTTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTATTTTTTCCAAAACAACGATGCTTCCTACTTACGTATTCAAAGCGCTTAA

Coding sequence (CDS)

ATGATACACGAGTCTGATCTTGTGTGTCGCAAAAGCACACGAATGGACAAGCGAACATTCGCAATTCTATGCCACTTACTTAGGACTGTATCTGGTCTTTCATCGACAGAGATTGTCGATGTCGAGGAAATGGTTGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCAGTGAGACAGTATCTCGATATTTTAACATCGTATTGTTCGTTGTGGTTCGACTGTATGAGGTGTTTATAAAGAGATCTGCTCCGTATGTTTATTTCAACCTGCAGAATTGCTTTGGTGCGTTAGACAAGACGTATATAAAGGTCAACGTCCCTGCAGGAGATCGGTCTACATTCAGAACGTGTAAGGGGGATATTGCCACAAACGTTCTGGGGGTGTGCGACACGAAAGGTGATTTCGTTTATGTCCTCGCCGGTTGGAAAGGATCCGCAGCAGACTCGCGGATTCTACGTGATGCCCTTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTATTTTTTCCAAAACAACGATGCTTCCTACTTACGTATTCAAAGCGCTTAA

Protein sequence

MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGISYFFQNNDASYLRIQSA

Homology

[Close]

BLAST of Cmc04g0110671.1 vs. NCBI nr
Match: TYK14046.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.0 bits (798), Expect = 3.7e-81
Identity = 156/185 (84.32%), Postives = 165/185 (89.19%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESD+VCR+S RMD+RTF ILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDIVCRQSMRMDRRTFTILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALDKTYIKVNVPA 120
           IQREFVRS ETVSR+FNIVL  VV+LYE  IKR  P +Y NLQNC GALD TYIKVNVP 
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVVQLYEELIKRPVPRLYLNLQNCLGALDGTYIKVNVPV 145

Query: 121 GDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGI 180
           GDRSTFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDALSQENGLQVPKG 
Sbjct: 146 GDRSTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSQENGLQVPKGQ 205

Query: 181 SYFFQ 186
            Y  Q
Sbjct: 206 RYHLQ 210

[Close]

BLAST of Cmc04g0110671.1 vs. NCBI nr
Match: KAA0047370.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 1.1e-77
Identity = 150/175 (85.71%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESD+VCR+S RMD+RTF ILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDIVCRQSMRMDRRTFTILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALDKTYIKVNVPA 120
           IQREFVRS ETVSR+FNIVL  VV+LYE  IKR  P +Y NLQNC GALD TYIKVNVP 
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVVQLYEELIKRPVPRLYLNLQNCLGALDGTYIKVNVPV 145

Query: 121 GDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQ 176
           GDRSTFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDALSQENGLQ
Sbjct: 146 GDRSTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSQENGLQ 200

[Close]

BLAST of Cmc04g0110671.1 vs. NCBI nr
Match: KAA0036923.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.5e-77
Identity = 155/191 (81.15%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALDKTYIKVNVPA 120
           IQREFVRS ETVSR+FNIVL  V+RLYE  +KR  P       NC GALD TYIKVNVPA
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVP-------NCLGALDGTYIKVNVPA 145

Query: 121 GDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGI 180
           GDR TFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDA+SQENGLQVPKG 
Sbjct: 146 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGY 205

Query: 181 SYFFQNNDASY 192
            Y     DA Y
Sbjct: 206 YYLC---DAGY 206

[Close]

BLAST of Cmc04g0110671.1 vs. NCBI nr
Match: KAA0037743.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.5e-77
Identity = 155/198 (78.28%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHD+KNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDLKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYV-------YFNLQNCFGALDKTY 120
           IQREFVRS ETVSR+FNIVL  V+RLYE  IKR  P         +   +NC GALD+TY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDRTY 145

Query: 121 IKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENG 180
           IKVNVPAGDR TFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDA+SQENG
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENG 205

Query: 181 LQVPKGISYFFQNNDASY 192
           LQVPKG  Y     DA Y
Sbjct: 206 LQVPKGYYYLC---DAGY 220

[Close]

BLAST of Cmc04g0110671.1 vs. NCBI nr
Match: KAA0042501.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 3.2e-77
Identity = 155/191 (81.15%), Postives = 163/191 (85.34%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALDKTYIKVNVPA 120
           IQREFVRS ETVSRYFNIVL  V+RLYE  IKR  P       NC GALD TYIKVNVPA
Sbjct: 86  IQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPVP-------NCLGALDGTYIKVNVPA 145

Query: 121 GDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGI 180
           GDR TFRT KG+IATNVLGVCDTKGDFVYVL GW+GSAADSRILRDA+S+ENGLQVPKG 
Sbjct: 146 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSRILRDAISRENGLQVPKGY 205

Query: 181 SYFFQNNDASY 192
            Y     DA Y
Sbjct: 206 YYLC---DAGY 206

[Close]

BLAST of Cmc04g0110671.1 vs. ExPASy TrEMBL
Match: A0A5D3CUG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00180 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.8e-81
Identity = 156/185 (84.32%), Postives = 165/185 (89.19%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESD+VCR+S RMD+RTF ILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDIVCRQSMRMDRRTFTILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALDKTYIKVNVPA 120
           IQREFVRS ETVSR+FNIVL  VV+LYE  IKR  P +Y NLQNC GALD TYIKVNVP 
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVVQLYEELIKRPVPRLYLNLQNCLGALDGTYIKVNVPV 145

Query: 121 GDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGI 180
           GDRSTFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDALSQENGLQVPKG 
Sbjct: 146 GDRSTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSQENGLQVPKGQ 205

Query: 181 SYFFQ 186
            Y  Q
Sbjct: 206 RYHLQ 210

[Close]

BLAST of Cmc04g0110671.1 vs. ExPASy TrEMBL
Match: A0A5A7TW41 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00210 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 5.4e-78
Identity = 150/175 (85.71%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESD+VCR+S RMD+RTF ILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDIVCRQSMRMDRRTFTILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALDKTYIKVNVPA 120
           IQREFVRS ETVSR+FNIVL  VV+LYE  IKR  P +Y NLQNC GALD TYIKVNVP 
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVVQLYEELIKRPVPRLYLNLQNCLGALDGTYIKVNVPV 145

Query: 121 GDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQ 176
           GDRSTFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDALSQENGLQ
Sbjct: 146 GDRSTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSQENGLQ 200

[Close]

BLAST of Cmc04g0110671.1 vs. ExPASy TrEMBL
Match: A0A5A7T1V5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00150 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 155/191 (81.15%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALDKTYIKVNVPA 120
           IQREFVRS ETVSR+FNIVL  V+RLYE  +KR  P       NC GALD TYIKVNVPA
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVP-------NCLGALDGTYIKVNVPA 145

Query: 121 GDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGI 180
           GDR TFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDA+SQENGLQVPKG 
Sbjct: 146 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGY 205

Query: 181 SYFFQNNDASY 192
            Y     DA Y
Sbjct: 206 YYLC---DAGY 206

[Close]

BLAST of Cmc04g0110671.1 vs. ExPASy TrEMBL
Match: A0A5A7T441 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00390 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 155/198 (78.28%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHD+KNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDLKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYV-------YFNLQNCFGALDKTY 120
           IQREFVRS ETVSR+FNIVL  V+RLYE  IKR  P         +   +NC GALD+TY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDRTY 145

Query: 121 IKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENG 180
           IKVNVPAGDR TFRT KG+IATNVLGVCDTKGDFVYVLAGW+GSAADSRILRDA+SQENG
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENG 205

Query: 181 LQVPKGISYFFQNNDASY 192
           LQVPKG  Y     DA Y
Sbjct: 206 LQVPKGYYYLC---DAGY 220

[Close]

BLAST of Cmc04g0110671.1 vs. ExPASy TrEMBL
Match: A0A5A7TLQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00550 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77
Identity = 155/191 (81.15%), Postives = 163/191 (85.34%), Query Frame = 0


Query: 1   MIHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGALDKTYIKVNVPA 120
           IQREFVRS ETVSRYFNIVL  V+RLYE  IKR  P       NC GALD TYIKVNVPA
Sbjct: 86  IQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPVP-------NCLGALDGTYIKVNVPA 145

Query: 121 GDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKGI 180
           GDR TFRT KG+IATNVLGVCDTKGDFVYVL GW+GSAADSRILRDA+S+ENGLQVPKG 
Sbjct: 146 GDRPTFRTRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSRILRDAISRENGLQVPKGY 205

Query: 181 SYFFQNNDASY 192
            Y     DA Y
Sbjct: 206 YYLC---DAGY 206

[Close]

BLAST of Cmc04g0110671.1 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-27
Identity = 68/187 (36.36%), Postives = 102/187 (54.55%), Query Frame = 0


Query: 9   CRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 68
           C ++ RMDK  F  LC LL+T   L  T  + +E  +A+FL ++ H+++ R +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 69  SETVSRYFNIVLFVVVRLYEVF---------IKRSAPYVYFNLQNCFGALDKTYIKVNVP 128
            ET+SR+FN VL  V+ + + F         ++   PY     ++C G +D  +I V V 
Sbjct: 102 GETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDDPY----FKDCVGVVDSFHIPVMVG 161

Query: 129 AGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKG 187
             ++  FR   G +  NVL        F YVLAGW+GSA+D ++L  AL++ N LQVP+G
Sbjct: 162 VDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQG 221

[Close]

BLAST of Cmc04g0110671.1 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-14
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 93  RSAPYVYFNLQNCFGALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLA 152
           R +  +Y   ++C GA+D T+I   V      +FR  KGDI+ N+L  C+   +F+YVL+
Sbjct: 13  RESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLS 72

Query: 153 GWKGSAADSRILRDALSQ-ENGLQVPK 179
           GW+GSA DS++L DAL++  N L VP+
Sbjct: 73  GWEGSAHDSKVLNDALTRNSNRLPVPE 99

[Close]

BLAST of Cmc04g0110671.1 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 52/196 (26.53%), Postives = 86/196 (43.88%), Query Frame = 0


Query: 2   IHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           + +    C +  RM    F  LC++L+T   L  T  + +EE VAMFL +  H+   R +
Sbjct: 59  LQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDV 118

Query: 62  QREFVRSSETVSRYFNIVLFVV-------------VRLYEVFIKRSAPYVYFNLQNCF-G 121
              F R+ ETV R F  VL                  LY +  +      Y+   + F G
Sbjct: 119 GLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVG 178

Query: 122 ALDKTYIKVNVPAGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDA 181
           A+D T++ V V    +  +     + + N++ +CD K  F Y+  G  GS  D+ +L+ A
Sbjct: 179 AMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIA 238

Query: 182 LSQENGLQVPKGISYF 184
              ++   +P    Y+
Sbjct: 239 QQSDSEFPLPPSEKYY 254

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BLAST of Cmc04g0110671.1 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-11
Identity = 53/184 (28.80%), Postives = 80/184 (43.48%), Query Frame = 0


Query: 2   IHESDLVCRKSTRMDKRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFVRSSETVSRYFNIVLFVVVRLYEVFIKRSAPYVYFNLQNCFGAL--DKTYIKVNVP 121
              F  + ET+ R F+ VL  + RL   +I+   P     L+     L  D  Y      
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIR---PRKVEELRAISNRLQDDTRYWPF--- 136

Query: 122 AGDRSTFRTCKGDIATNVLGVCDTKGDFVYVLAGWKGSAADSRILRDALSQENGLQVPKG 181
                      G  + NVL +CD    F Y   G  GS  D+R+L  A+S +    VP  
Sbjct: 137 ------LMDLLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVPPD 188

Query: 182 ISYF 184
             Y+
Sbjct: 197 SKYY 188

The following BLAST results are available for this feature:

BLAST of Cmc04g0110671.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14046.1	3.7e-81	84.32	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047370.1	1.1e-77	85.71	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036923.1	2.5e-77	81.15	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037743.1	2.5e-77	78.28	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042501.1	3.2e-77	81.15	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0110671.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0110671.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CUG9	1.8e-81	84.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TW41	5.4e-78	85.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T1V5	1.2e-77	81.15	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T441	1.2e-77	78.28	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TLQ0	1.6e-77	81.15	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc04g0110671.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	5.6e-27	36.36	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	4.1e-14	42.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G43722.1	1.2e-13	26.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	4.3e-11	28.80	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 110..167 e-value: 1.9E-6 score: 27.6
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..184
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..184

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0110671	Cmc04g0110671	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0110671.1-exon	Cmc04g0110671.1-exon-CMiso1.1chr04:29924110..29924415	exon
Cmc04g0110671.1-exon	Cmc04g0110671.1-exon-CMiso1.1chr04:29924515..29924802	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0110671.1-cds	Cmc04g0110671.1-cds-CMiso1.1chr04:29924110..29924415	CDS
Cmc04g0110671.1-cds	Cmc04g0110671.1-cds-CMiso1.1chr04:29924515..29924802	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0110671.1	Cmc04g0110671.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding