Cmc04g0101081.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0101081.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 17284042 .. 17284593 (-)
Sequence length	552
RNA-Seq Expression	Cmc04g0101081.1
Synteny	Cmc04g0101081.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAAAAAGTTTTTCACTCAATCCTTTAGAGGAGGAGCAATCTGTTTTTGCTCTCAAAGAAGATGAAACACAGCTTTGGCACAAAAGAGTCGGTCACTATCATCATCAAGGGCTGCTGCAACTAACGGAGTTGGCACTTGATTTTCCCAAGCTTAGTGAAGAAATCTCAAGCTGCAAAGCGTGTCATTTTGGAAAGCAAAATAGGAAGTCATTTCCCAAGTCATCTTGGAGAGCCACTCAAAAATTGCAGCTCATTCACACAGATGTTGCAGGTCCTCAGAGAACACCTTCTTTAAAAGGTAGTCTATATTATATTGCCTTTATTGATGACTTCACCAGAATGTGCTGGATTGTTTTCTTGAAGTTTAAATCAGAGGTTGCTCATGTCTTTTGGAAGTTCAAGGCAAGAGTTGAAAATGAAAGTGGTTGCAAAATTCAAATGGTAAGATCTGACAATGGGAAAGAGTATGTTTCGGCAGAATTTGACAAGTTTTGTGAAGATTCAGGCATAAAACATCAACTTACAGCTCCTTACACTCCTCAATAA

mRNA sequence

ATGAAAGGAAAAAGTTTTTCACTCAATCCTTTAGAGGAGGAGCAATCTGTTTTTGCTCTCAAAGAAGATGAAACACAGCTTTGGCACAAAAGAGTCGGTCACTATCATCATCAAGGGCTGCTGCAACTAACGGAGTTGGCACTTGATTTTCCCAAGCTTAGTGAAGAAATCTCAAGCTGCAAAGCGTGTCATTTTGGAAAGCAAAATAGGAAGTCATTTCCCAAGTCATCTTGGAGAGCCACTCAAAAATTGCAGCTCATTCACACAGATGTTGCAGGTCCTCAGAGAACACCTTCTTTAAAAGGTAGTCTATATTATATTGCCTTTATTGATGACTTCACCAGAATGTGCTGGATTGTTTTCTTGAAGTTTAAATCAGAGGTTGCTCATGTCTTTTGGAAGTTCAAGGCAAGAGTTGAAAATGAAAGTGGTTGCAAAATTCAAATGGTAAGATCTGACAATGGGAAAGAGTATGTTTCGGCAGAATTTGACAAGTTTTGTGAAGATTCAGGCATAAAACATCAACTTACAGCTCCTTACACTCCTCAATAA

Coding sequence (CDS)

ATGAAAGGAAAAAGTTTTTCACTCAATCCTTTAGAGGAGGAGCAATCTGTTTTTGCTCTCAAAGAAGATGAAACACAGCTTTGGCACAAAAGAGTCGGTCACTATCATCATCAAGGGCTGCTGCAACTAACGGAGTTGGCACTTGATTTTCCCAAGCTTAGTGAAGAAATCTCAAGCTGCAAAGCGTGTCATTTTGGAAAGCAAAATAGGAAGTCATTTCCCAAGTCATCTTGGAGAGCCACTCAAAAATTGCAGCTCATTCACACAGATGTTGCAGGTCCTCAGAGAACACCTTCTTTAAAAGGTAGTCTATATTATATTGCCTTTATTGATGACTTCACCAGAATGTGCTGGATTGTTTTCTTGAAGTTTAAATCAGAGGTTGCTCATGTCTTTTGGAAGTTCAAGGCAAGAGTTGAAAATGAAAGTGGTTGCAAAATTCAAATGGTAAGATCTGACAATGGGAAAGAGTATGTTTCGGCAGAATTTGACAAGTTTTGTGAAGATTCAGGCATAAAACATCAACTTACAGCTCCTTACACTCCTCAATAA

Protein sequence

MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIVFLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPYTPQ

Homology

[Close]

BLAST of Cmc04g0101081.1 vs. NCBI nr
Match: TYJ95793.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04080.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07482.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23562.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK24808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 382.1 bits (980), Expect = 2.7e-102
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
           MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 436 MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 495

Query: 61  KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
           KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 496 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 555

Query: 121 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
           FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 556 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 615

Query: 181 TPQ 184
           TPQ
Sbjct: 616 TPQ 618

[Close]

BLAST of Cmc04g0101081.1 vs. NCBI nr
Match: TYK12368.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 382.1 bits (980), Expect = 2.7e-102
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
           MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 403 MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 462

Query: 61  KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
           KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 463 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 522

Query: 121 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
           FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 523 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 582

Query: 181 TPQ 184
           TPQ
Sbjct: 583 TPQ 585

[Close]

BLAST of Cmc04g0101081.1 vs. NCBI nr
Match: TYK21117.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 382.1 bits (980), Expect = 2.7e-102
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
           MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 552 MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 611

Query: 61  KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
           KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 612 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 671

Query: 121 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
           FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 672 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 731

Query: 181 TPQ 184
           TPQ
Sbjct: 732 TPQ 734

[Close]

BLAST of Cmc04g0101081.1 vs. NCBI nr
Match: KAA0025181.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 380.6 bits (976), Expect = 7.8e-102
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
           MKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 408 MKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 467

Query: 61  KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
           KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 468 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 527

Query: 121 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
           FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 528 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 587

Query: 181 TPQ 184
           TPQ
Sbjct: 588 TPQ 590

[Close]

BLAST of Cmc04g0101081.1 vs. NCBI nr
Match: KAA0035947.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 380.6 bits (976), Expect = 7.8e-102
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
           MKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 436 MKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 495

Query: 61  KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
           KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 496 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 555

Query: 121 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
           FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 556 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 615

Query: 181 TPQ 184
           TPQ
Sbjct: 616 TPQ 618

[Close]

BLAST of Cmc04g0101081.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.6e-35
Identity = 73/165 (44.24%), Postives = 98/165 (59.39%), Query Frame = 0


Query: 19  ALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQNRKSFPKSSW 78
           A  E    LWHKR+GH   +GL  L + +L        +  C  C FGKQ+R SF  SS 
Sbjct: 416 AQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSE 475

Query: 79  RATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIVFLKFKSEVAHVFWKFKAR 138
           R    L L+++DV GP    S+ G+ Y++ FIDD +R  W+  LK K +V  VF KF A 
Sbjct: 476 RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHAL 535

Query: 139 VENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPYTPQ 184
           VE E+G K++ +RSDNG EY S EF+++C   GI+H+ T P TPQ
Sbjct: 536 VERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 580

[Close]

BLAST of Cmc04g0101081.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 105.9 bits (263), Expect = 4.9e-22
Identity = 62/177 (35.03%), Postives = 93/177 (52.54%), Query Frame = 0


Query: 16  SVFALKEDETQLWHKRVGHYHHQGLLQL-------TELALDFPKLSEEISSCKACHFGKQ 75
           S+ A  ++  +LWH+R GH     LL++        +  L+  +LS EI  C+ C  GKQ
Sbjct: 406 SINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEI--CEPCLNGKQ 465

Query: 76  NRKSFP--KSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIVFLKFKS 135
            R  F   K      + L ++H+DV GP    +L    Y++ F+D FT  C    +K+KS
Sbjct: 466 ARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKS 525

Query: 136 EVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPYTPQ 184
           +V  +F  F A+ E     K+  +  DNG+EY+S E  +FC   GI + LT P+TPQ
Sbjct: 526 DVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQ 580

[Close]

BLAST of Cmc04g0101081.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-15
Identity = 53/159 (33.33%), Postives = 80/159 (50.31%), Query Frame = 0


Query: 28  WHKRVGHYHHQGLLQ-LTELALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQL 87
           WH R+GH     L   ++  +L     S +  SC  C   K N+  F +S+  +T+ L+ 
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 88  IHTDVAGPQRTPSLK--GSLYYIAFIDDFTRMCWIVFLKFKSEVAHVFWKFKARVENESG 147
           I++DV     +P L      YY+ F+D FTR  W+  LK KS+V   F  FK  +EN   
Sbjct: 527 IYSDV---WSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQ 586

Query: 148 CKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPYTPQ 184
            +I    SDNG E+V+    ++    GI H  + P+TP+
Sbjct: 587 TRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTPE 620

[Close]

BLAST of Cmc04g0101081.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.5e-15
Identity = 51/157 (32.48%), Postives = 79/157 (50.32%), Query Frame = 0


Query: 28  WHKRVGHYHHQGLLQ-LTELALDFPKLSEEISSCKACHFGKQNRKSFPKSSWRATQKLQL 87
           WH R+GH     L   ++  +L     S ++ SC  C   K ++  F  S+  +++ L+ 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 88  IHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIVFLKFKSEVAHVFWKFKARVENESGCK 147
           I++DV       S+    YY+ F+D FTR  W+  LK KS+V   F  FK+ VEN    +
Sbjct: 506 IYSDV-WSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 148 IQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPYTPQ 184
           I  + SDNG E+V      +    GI H  + P+TP+
Sbjct: 566 IGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPE 599

[Close]

BLAST of Cmc04g0101081.1 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.3e-102
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
           MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 436 MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 495

Query: 61  KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
           KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 496 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 555

Query: 121 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
           FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 556 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 615

Query: 181 TPQ 184
           TPQ
Sbjct: 616 TPQ 618

[Close]

BLAST of Cmc04g0101081.1 vs. ExPASy TrEMBL
Match: A0A5D3DBU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00950 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.3e-102
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
           MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 552 MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 611

Query: 61  KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
           KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 612 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 671

Query: 121 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
           FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 672 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 731

Query: 181 TPQ 184
           TPQ
Sbjct: 732 TPQ 734

[Close]

BLAST of Cmc04g0101081.1 vs. ExPASy TrEMBL
Match: A0A5D3CMK4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001480 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.3e-102
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
           MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 403 MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 462

Query: 61  KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
           KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 463 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 522

Query: 121 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
           FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 523 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 582

Query: 181 TPQ 184
           TPQ
Sbjct: 583 TPQ 585

[Close]

BLAST of Cmc04g0101081.1 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 3.8e-102
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
           MKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 436 MKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 495

Query: 61  KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
           KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 496 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 555

Query: 121 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
           FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 556 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 615

Query: 181 TPQ 184
           TPQ
Sbjct: 616 TPQ 618

[Close]

BLAST of Cmc04g0101081.1 vs. ExPASy TrEMBL
Match: A0A5D3BL45 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00490 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 3.8e-102
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1    MKGKSFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 60
            MKGKSFSLNPLEE+QSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC
Sbjct: 1055 MKGKSFSLNPLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSC 1114

Query: 61   KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIV 120
            KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWI 
Sbjct: 1115 KACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIF 1174

Query: 121  FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 180
            FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY
Sbjct: 1175 FLKFKSEVAHVFWKFKARVENESGCKIQMVRSDNGKEYVSAEFDKFCEDSGIKHQLTAPY 1234

Query: 181  TPQ 184
            TPQ
Sbjct: 1235 TPQ 1237

The following BLAST results are available for this feature:

BLAST of Cmc04g0101081.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ95793.1	2.7e-102	99.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK12368.1	2.7e-102	99.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21117.1	2.7e-102	99.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0025181.1	7.8e-102	98.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0035947.1	7.8e-102	98.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc04g0101081.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.6e-35	44.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.9e-22	35.03	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.4e-15	33.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.5e-15	32.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc04g0101081.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMJ1	1.3e-102	99.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DBU0	1.3e-102	99.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CMK4	1.3e-102	99.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E2V7	3.8e-102	98.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BL45	3.8e-102	98.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc04g0101081.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 7..68 e-value: 7.7E-11 score: 41.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 75..183 e-value: 1.2E-25 score: 91.9
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 81..182 e-value: 9.7E-19 score: 67.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 70..183 score: 17.218021
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 23..180
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 23..180
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 77..183

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0101081	Cmc04g0101081	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0101081.1-exon	Cmc04g0101081.1-exon-CMiso1.1chr04:17284042..17284593	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0101081.1-cds	Cmc04g0101081.1-cds-CMiso1.1chr04:17284042..17284593	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0101081.1	Cmc04g0101081.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008270	zinc ion binding