Cmc03g0081201.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc03g0081201.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr03: 26811510 .. 26811970 (+)
Sequence length	461
RNA-Seq Expression	Cmc03g0081201.1
Synteny	Cmc03g0081201.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATGATAATTATAGTCACTTCTCTCTTTACAAATTTGCATGTCAATATCATACTCAACACACACACACAACATATATGCTTAATTATGTCACCCACATAAACATTATTCATCTTTTCCTTTTCCTTTTTTTGCCTCTTCTAATGGTCGCAGCAAAAGTTGACGCTCAAATCCCAATTCCCCCCCTTTCCATCCATCCTTTTCCAATTACATACATGGTTCACACATTTCGTCGTTCGTCCCCACCAACCACACCAACACCACCGCTCCGCTCCCTTCCCTATGCCCTCACCAGCTCAATCAGCCCTCATCATCAGTCCCCCCTCGCCGGAAAACAGCAAAATGGAAACTGTTTGTAAGCTGATGATGATGGGGGTAGGTTTCGCGTTTCGGATATAGAAAGAAATGAATGGACTTGTGTGTCCGGGCGCCGTGGTTCGTCTCAGCTCCGAACTTTTCTG

mRNA sequence

TATATGATAATTATAGTCACTTCTCTCTTTACAAATTTGCATGTCAATATCATACTCAACACACACACACAACATATATGCTTAATTATGTCACCCACATAAACATTATTCATCTTTTCCTTTTCCTTTTTTTGCCTCTTCTAATGGTCGCAGCAAAAGTTGACGCTCAAATCCCAATTCCCCCCCTTTCCATCCATCCTTTTCCAATTACATACATGGTTCACACATTTCGTCGTTCGTCCCCACCAACCACACCAACACCACCGCTCCGCTCCCTTCCCTATGCCCTCACCAGCTCAATCAGCCCTCATCATCAGTCCCCCCTCGCCGGAAAACAGCAAAATGGAAACTGTTTGTAAGCTGATGATGATGGGGGTAGGTTTCGCGTTTCGGATATAGAAAGAAATGAATGGACTTGTGTGTCCGGGCGCCGTGGTTCGTCTCAGCTCCGAACTTTTCTG

Coding sequence (CDS)

ATGCTTAATTATGTCACCCACATAAACATTATTCATCTTTTCCTTTTCCTTTTTTTGCCTCTTCTAATGGTCGCAGCAAAAGTTGACGCTCAAATCCCAATTCCCCCCCTTTCCATCCATCCTTTTCCAATTACATACATGGTTCACACATTTCGTCGTTCGTCCCCACCAACCACACCAACACCACCGCTCCGCTCCCTTCCCTATGCCCTCACCAGCTCAATCAGCCCTCATCATCAGTCCCCCCTCGCCGGAAAACAGCAAAATGGAAACTGTTTGTAA

Protein sequence

MLNYVTHINIIHLFLFLFLPLLMVAAKVDAQIPIPPLSIHPFPITYMVHTFRRSSPPTTPTPPLRSLPYALTSSISPHHQSPLAGKQQNGNCL

Homology

The following BLAST results are available for this feature:

BLAST of Cmc03g0081201.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc03g0081201.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc03g0081201.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc03g0081201.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc03g0081201	Cmc03g0081201	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0081201.1-exon	Cmc03g0081201.1-exon-CMiso1.1chr03:26811510..26811970	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0081201.1-five_prime_utr	Cmc03g0081201.1-five_prime_utr-CMiso1.1chr03:26811510..26811586	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0081201.1-cds	Cmc03g0081201.1-cds-CMiso1.1chr03:26811587..26811868	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0081201.1-three_prime_utr	Cmc03g0081201.1-three_prime_utr-CMiso1.1chr03:26811869..26811970	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc03g0081201.1	Cmc03g0081201.1-protein	polypeptide