Cmc03g0063281.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc03g0063281.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr03: 3745956 .. 3748343 (-)
Sequence length1343
RNA-Seq ExpressionCmc03g0063281.1
SyntenyCmc03g0063281.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAGGACTAACAAAATTTTCCCAAAATCTTCTCATGGTAATTTTGTTTTCCGAAGAAAATCCCAAAAGAAAAAAGGGAAGAAAGAAGAAGAAGAAGAAGAAGTACTGTTGAGGTCACTCTTTCAAAAAACAAACCCAAAAACCTGTAAATTTATGTTTAGAGTTTGCACAAATATATACTTCTGTAAGATTGATTATCTCTACACATTTCTACTATTTCAACATGGCTGTGATTGAAAGCAGCATCTATTAAGCAATCTCAGTAATGCATCAGCTTTTCTTCTAGCTTTCAATGATCCATCAGCTGCCAAGCTTTGAAGTGAAGGAATACTTCTTGGATTTATCAACAAACGCCTTGCTACTTCTTCTCCTCCATCCTTACACAGCCCCAATAACAATGTAAGTGAACTGTCTTTCCCTTTTGGAGATCCAAATCTTAAAAGATCAATAAGCAATGACACTAAAACTCTACTCTTTCTTATCTCTTGCAGCCCTTCTGAGCAACCTAAAACCAAGGAGAGCGCCTGCAACGCATCGTCTGTTATGCCTGCTTTGTCGTCTGTCAGTAACTCAATCAGCAATGGCACTGCCCCAGCTACTACAATACAAGCTTTATTGGCATTGTAAAGTGCTAGGTTGCAAAGCGCTGTGGCAGCGTCTCGTTTCCCGGCTGAATTGCCTTCTTTAAGTAGCCTCACCAATGCTGGTATGGCTTTTGGACTCGCCCCTATTGTTATTTTGAACTCGTCCACCATTGTTAAGCTATATATTGTTGCTGCAGCATTTTCTCTTGCTTCCATTGTTTTACCTGATTCTAAGATGTGTGTTATGTTGTCTATTGCCCCTGCTGCTACTATGAGGATCTTGTTGTTGTTGAAGATTGCTAGGTTGAACAATGCTGTCACTGCGTTTTCTTCAATCCTTGGATCGCCGGATTTCAACAATGTTACTAGAAACGGTATCGCTCCTGCTTCGGCAATCATTCTTCGGTTATCCATTCCAGTTTTCGCTAGTAACCGGAGTTCATATGCAGCTTGTCTTTGAATATCTGGCGACCCGGTTGCAAGTTTTCCCACAAGAAACTCGGCTGTCATTTTAACAGCATCGGAGGCTGCTTTGGATGCGGAAATGTGATCGACCGGTTCCTCGGAAAGGTATTTTTTGCTGTTGCTTCTCTCCAACCCAAAGGAAGAATATGGTTTTGTAGGTTCATTCATATTAATGTTGTTCTCTTGACACCACTGTTGCATCAAACTTTTGAGTGCATAATTTGGTATGAGGGCCATATGAATTAGCCTCTGATTACTCTTGGGACAAACATGATGTCCTGAGTCAATCCATTGGGCTATCGAATAACGATCGTAAGTATGCCCGGACGATATAATTACAGGGTCTCTCATGAAATCCAGTGAAATGGGACAACGAAAATCGTCTGGAATTTGAACCAATGAATTAGAAGAAGATGAATGATCTAAATGTTTGTTTGAGTGTTGAAACTTTAAGTTGTATTTTCCCCCATCATTTTCATTTTCTTTCTTACTAAAGATCACTGTTTTGGCATGCTTAACCAGAGAAATGAGATTGTTTATATTAGAAACCACAATGATTCCACCTGTTCCTGCTTGTTTAAGAGCTTCAGCCTCTAGTTTTGATATTTCTTCATCACAATCCATCATGTTTCTCAACCCAACACTGCTGAAAATCTCTTTGATTTTCCCCACTTCTCCCAGACCTTTATTCTTGTAGTTTCTCTCCTTGTTGCTCATTAGTTGAAGAAGCTCATCTCTTCTCTGAACCTCTCGAGCATTAACCGAAAACTCGAATCGTTTAGCTTGACTATGAAGAAGCTCCACTTGTTCTCTCGTATCATCTGTTAACTTAAGCAAACTAAGAGGTAAAATGTCAAGTACTCTTCCAATCTCCTTCACAAACTGATAAAACTGATTTGAAATGGACTCGGTCTGTAATAAACTCCATAAACAACTTCCTTCCTCACAGCTTTGAGTCAAAATCTTAACTCTTCTGATTACAGAAAAGATTTCAGTGAGACAAAGAATTGAAGATGGAGGAAGGGGAGAATTTGATTCTTGAACTTCTTCAAATAAGAAAGCAAGAAGCTTGATTCTTCTTCTCATGGTTGAGATGGTTTTAGCATGTATAAAAGGAGCCTTCTCTTCAAAAGCAACTTCATTGGATAAGAGAATTAGTGATTCTAGCAGAGACCCAGAAGGGAAAAGGCTTGAAGAAGCTGCCATCATTGAGGAAAGAGCAACATCCATGGCCATTTTTCACTAAATGAATAGACTTTGTTCATAGTTTTTATCAACATTACATTAAGTCAGACATAGATTACTAGGAAGAAAATTTCAAAACTCCTTCAAAAACTTG

mRNA sequence

AATAGGACTAACAAAATTTTCCCAAAATCTTCTCATGGTAATTTTGTTTTCCGAAGAAAATCCCAAAAGAAAAAAGGGAAGAAAGAAGAAGAAGAAGAAGAAGTACTGTTGAGGTCACTCTTTCAAAAAACAAACCCAAAAACCTGTAAATTTATGTTTAGAGTTTGCACAAATATATACTTCTGTAAGATTGATTATCTCTACACATTTCTACTATTTCAACATGGCTGTGATTGAAAGCAGCATCTATTAAGCAATCTCAGTAATGCATCAGCTTTTCTTCTAGCTTTCAATGATCCATCAGCTGCCAAGCTTTGAAGTGAAGGAATACTTCTTGGATTTATCAACAAACGCCTTGCTACTTCTTCTCCTCCATCCTTACACAGCCCCAATAACAATCCCTTCTGAGCAACCTAAAACCAAGGAGAGCGCCTGCAACGCATCGTCTGTTATGCCTGCTTTGTCGTCTGTCAGTAACTCAATCAGCAATGGCACTGCCCCAGCTACTACAATACAAGCTTTATTGGCATTGTAAAGTGCTAGGTTGCAAAGCGCTGTGGCAGCGTCTCGTTTCCCGGCTGAATTGCCTTCTTTAAGTAGCCTCACCAATGCTGGTATGGCTTTTGGACTCGCCCCTATTGTTATTTTGAACTCGTCCACCATTGTTAAGCTATATATTGTTGCTGCAGCATTTTCTCTTGCTTCCATTGTTTTACCTGATTCTAAGATGTGTGTTATGTTGTCTATTGCCCCTGCTGCTACTATGAGGATCTTGTTGTTGTTGAAGATTGCTAGGTTGAACAATGCTGTCACTGCGTTTTCTTCAATCCTTGGATCGCCGGATTTCAACAATGTTACTAGAAACGCTTGTCTTTGAATATCTGGCGACCCGGTTGCAAGTTTTCCCACAAGAAACTCGGCTGTCATTTTAACAGCATCGGAGGCTGCTTTGGATGCGGAAATGTGATCGACCGGTTCCTCGGAAAGAAAAGATTTCAGTGAGACAAAGAATTGAAGATGGAGGAAGGGGAGAATTTGATTCTTGAACTTCTTCAAATAAGAAAGCAAGAAGCTTGATTCTTCTTCTCATGGTTGAGATGGTTTTAGCATGTATAAAAGGAGCCTTCTCTTCAAAAGCAACTTCATTGGATAAGAGAATTAGTGATTCTAGCAGAGACCCAGAAGGGAAAAGGCTTGAAGAAGCTGCCATCATTGAGGAAAGAGCAACATCCATGGCCATTTTTCACTAAATGAATAGACTTTGTTCATAGTTTTTATCAACATTACATTAAGTCAGACATAGATTACTAGGAAGAAAATTTCAAAACTCCTTCAAAAACTTG

Coding sequence (CDS)

ATGGCTTTTGGACTCGCCCCTATTGTTATTTTGAACTCGTCCACCATTGTTAAGCTATATATTGTTGCTGCAGCATTTTCTCTTGCTTCCATTGTTTTACCTGATTCTAAGATGTGTGTTATGTTGTCTATTGCCCCTGCTGCTACTATGAGGATCTTGTTGTTGTTGAAGATTGCTAGGTTGAACAATGCTGTCACTGCGTTTTCTTCAATCCTTGGATCGCCGGATTTCAACAATGTTACTAGAAACGCTTGTCTTTGA

Protein sequence

MAFGLAPIVILNSSTIVKLYIVAAAFSLASIVLPDSKMCVMLSIAPAATMRILLLLKIARLNNAVTAFSSILGSPDFNNVTRNACL
Homology
[Close]
BLAST of Cmc03g0063281.1 vs. NCBI nr
Match: PON79010.1 (hypothetical protein PanWU01x14_015110 [Parasponia andersonii])

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-09
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 1   MAFGLAPIVILNSSTIVKLYIVAAAFSLASIVLPDSKMCVMLSIAPAATMRILLLLKIAR 60
           +A G API  L SS + +L I AAAF LAS+VLPDS+  + LS+APAA +R LLLLK+ R
Sbjct: 86  IALGRAPIATLQSSIMDRLNIAAAAFFLASMVLPDSRTPMTLSMAPAAMIRSLLLLKMER 145

Query: 61  LNNAVTAFSSILGS 75
           L++AVTAFS ILGS
Sbjct: 146 LSSAVTAFSWILGS 159

[Close]
BLAST of Cmc03g0063281.1 vs. NCBI nr
Match: PON86564.1 (hypothetical protein TorRG33x02_176120 [Trema orientale])

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-09
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 1   MAFGLAPIVILNSSTIVKLYIVAAAFSLASIVLPDSKMCVMLSIAPAATMRILLLLKIAR 60
           +A G API  L SS + +L I AAAFSLAS+V PDS+  + LS+APAA +R LLLLK+ R
Sbjct: 86  IALGRAPIATLQSSIMDRLKIAAAAFSLASMVPPDSRTPMTLSMAPAAMIRTLLLLKMER 145

Query: 61  LNNAVTAFSSILGS 75
           L++AVTAFS ILGS
Sbjct: 146 LSSAVTAFSWILGS 159

[Close]
BLAST of Cmc03g0063281.1 vs. ExPASy TrEMBL
Match: A0A2P5E0E6 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_015110 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 1   MAFGLAPIVILNSSTIVKLYIVAAAFSLASIVLPDSKMCVMLSIAPAATMRILLLLKIAR 60
           +A G API  L SS + +L I AAAF LAS+VLPDS+  + LS+APAA +R LLLLK+ R
Sbjct: 86  IALGRAPIATLQSSIMDRLNIAAAAFFLASMVLPDSRTPMTLSMAPAAMIRSLLLLKMER 145

Query: 61  LNNAVTAFSSILGS 75
           L++AVTAFS ILGS
Sbjct: 146 LSSAVTAFSWILGS 159

[Close]
BLAST of Cmc03g0063281.1 vs. ExPASy TrEMBL
Match: A0A2P5ELY7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_176120 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 1   MAFGLAPIVILNSSTIVKLYIVAAAFSLASIVLPDSKMCVMLSIAPAATMRILLLLKIAR 60
           +A G API  L SS + +L I AAAFSLAS+V PDS+  + LS+APAA +R LLLLK+ R
Sbjct: 86  IALGRAPIATLQSSIMDRLKIAAAAFSLASMVPPDSRTPMTLSMAPAAMIRTLLLLKMER 145

Query: 61  LNNAVTAFSSILGS 75
           L++AVTAFS ILGS
Sbjct: 146 LSSAVTAFSWILGS 159

The following BLAST results are available for this feature:
BLAST of Cmc03g0063281.1 vs. NCBI nr
Match NameE-valueIdentityDescription
PON79010.18.1e-0962.16hypothetical protein PanWU01x14_015110 [Parasponia andersonii][more]
PON86564.18.1e-0962.16hypothetical protein TorRG33x02_176120 [Trema orientale][more]
BLAST of Cmc03g0063281.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc03g0063281.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5E0E63.9e-0962.16Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_015110 PE... [more]
A0A2P5ELY73.9e-0962.16Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_176120 PE=4 SV... [more]
BLAST of Cmc03g0063281.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc03g0063281Cmc03g0063281gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc03g0063281.1-exonCmc03g0063281.1-exon-CMiso1.1chr03:3745956..3746311exon
Cmc03g0063281.1-exonCmc03g0063281.1-exon-CMiso1.1chr03:3747190..3747310exon
Cmc03g0063281.1-exonCmc03g0063281.1-exon-CMiso1.1chr03:3747386..3747852exon
Cmc03g0063281.1-exonCmc03g0063281.1-exon-CMiso1.1chr03:3747945..3748343exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc03g0063281.1-three_prime_utrCmc03g0063281.1-three_prime_utr-CMiso1.1chr03:3745956..3746311three_prime_UTR
Cmc03g0063281.1-three_prime_utrCmc03g0063281.1-three_prime_utr-CMiso1.1chr03:3747190..3747299three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc03g0063281.1-cdsCmc03g0063281.1-cds-CMiso1.1chr03:3747300..3747310CDS
Cmc03g0063281.1-cdsCmc03g0063281.1-cds-CMiso1.1chr03:3747386..3747635CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc03g0063281.1-five_prime_utrCmc03g0063281.1-five_prime_utr-CMiso1.1chr03:3747636..3747852five_prime_UTR
Cmc03g0063281.1-five_prime_utrCmc03g0063281.1-five_prime_utr-CMiso1.1chr03:3747945..3748343five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc03g0063281.1Cmc03g0063281.1-proteinpolypeptide