Cmc02g0042911.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc02g0042911.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr02: 4860640 .. 4861494 (-)
Sequence length	855
RNA-Seq Expression	Cmc02g0042911.1
Synteny	Cmc02g0042911.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGAGATCTTTCATGTTTTCTAGGACTTCAAATTAAGCAAAAGAATGATGGCATTTTCATATCACAAGAAAAGTATGTCAGGAGTATGGTCAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCCAGCTGCAACACATGTTAAACTTACAAAAGACACTAAAGGTGCTAAAGTTGATCACAAACTTTACAGGAGTATAGCAGGCAGCCTATTATACTTAACAGCAAGTCGACCCGACATAGCTTATGCTATAGGAATACGTGCTCGTTATCAGGCGAATCCCCGCATCACTCACCTAGAAGCTGTTAAACGAATTCTTAAATATGTTCATGGGACCAGTGACTTTGGAATGATGTATTCCTATGATACCACTCCTACTATAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCCTAAAAGTACGTCTGGAGGTTGCTTTTTTTTGGAAAACAATTTAATCTCTTGGTTAAGTAAGAAGCAAAACTGTGTTTCTTTATCTACAGCTGAAGCTGAATATATGGCTGCAGGTAGTGGTTGTACACAATTGATTTGGATGGAAAACATGCTGCTTGAATATGGGTTCGATCAAGACACTATGACGTTGTATTGTGACAATATGAGTGCAATTGATATATCTAAGAATCCCGTTCAACATAGTCGAACTAAGCATATTGATATAAGACACCACTTTGTTCGAGAACTAGTTGAAGACAAAGTAATCAAGTTTGATCATATTCGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCTGGATGCTAGCTCATTCGAATACTTACATGCTGGTTTAGGTGTTTGTCGCACTTAA

mRNA sequence

ATGGTTGGAGATCTTTCATGTTTTCTAGGACTTCAAATTAAGCAAAAGAATGATGGCATTTTCATATCACAAGAAAAGTATGTCAGGAGTATGGTCAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCCAGCTGCAACACATGTTAAACTTACAAAAGACACTAAAGGTGCTAAAGTTGATCACAAACTTTACAGGAGTATAGCAGGCAGCCTATTATACTTAACAGCAAGTCGACCCGACATAGCTTATGCTATAGGAATACGTGCTCGTTATCAGGCGAATCCCCGCATCACTCACCTAGAAGCTGTTAAACGAATTCTTAAATATGTTCATGGGACCAGTGACTTTGGAATGATGTATTCCTATGATACCACTCCTACTATAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCCTAAAAGTACGTCTGGAGGTTGCTTTTTTTTGGAAAACAATTTAATCTCTTGGTTAAGTAAGAAGCAAAACTGTGTTTCTTTATCTACAGCTGAAGCTGAATATATGGCTGCAGGTAGTGGTTGTACACAATTGATTTGGATGGAAAACATGCTGCTTGAATATGGGTTCGATCAAGACACTATGACGTTGTATTGTGACAATATGAGTGCAATTGATATATCTAAGAATCCCGTTCAACATAGTCGAACTAAGCATATTGATATAAGACACCACTTTGTTCGAGAACTAGTTGAAGACAAAGTAATCAAGTTTGATCATATTCGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCTGGATGCTAGCTCATTCGAATACTTACATGCTGGTTTAGGTGTTTGTCGCACTTAA

Coding sequence (CDS)

ATGGTTGGAGATCTTTCATGTTTTCTAGGACTTCAAATTAAGCAAAAGAATGATGGCATTTTCATATCACAAGAAAAGTATGTCAGGAGTATGGTCAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCCAGCTGCAACACATGTTAAACTTACAAAAGACACTAAAGGTGCTAAAGTTGATCACAAACTTTACAGGAGTATAGCAGGCAGCCTATTATACTTAACAGCAAGTCGACCCGACATAGCTTATGCTATAGGAATACGTGCTCGTTATCAGGCGAATCCCCGCATCACTCACCTAGAAGCTGTTAAACGAATTCTTAAATATGTTCATGGGACCAGTGACTTTGGAATGATGTATTCCTATGATACCACTCCTACTATAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCCTAAAAGTACGTCTGGAGGTTGCTTTTTTTTGGAAAACAATTTAATCTCTTGGTTAAGTAAGAAGCAAAACTGTGTTTCTTTATCTACAGCTGAAGCTGAATATATGGCTGCAGGTAGTGGTTGTACACAATTGATTTGGATGGAAAACATGCTGCTTGAATATGGGTTCGATCAAGACACTATGACGTTGTATTGTGACAATATGAGTGCAATTGATATATCTAAGAATCCCGTTCAACATAGTCGAACTAAGCATATTGATATAAGACACCACTTTGTTCGAGAACTAGTTGAAGACAAAGTAATCAAGTTTGATCATATTCGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCTGGATGCTAGCTCATTCGAATACTTACATGCTGGTTTAGGTGTTTGTCGCACTTAA

Protein sequence

MVGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAKVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEYMAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCRT

Homology

[Close]

BLAST of Cmc02g0042911.1 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 518.5 bits (1334), Expect = 3.7e-143
Identity = 253/284 (89.08%), Postives = 266/284 (93.66%), Query Frame = 0


Query: 1   MVGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGA 60
           MVG+LSCFLGLQIK+KNDGIFISQEKY ++MVKKFGLEQARNKRTP ATHVKLTKDT+  
Sbjct: 1   MVGELSCFLGLQIKRKNDGIFISQEKYAKNMVKKFGLEQARNKRTPTATHVKLTKDTEDV 60

Query: 61  KVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 120
           + DHKLYRSI GSLLYLTASRP+IAY +GI A YQA+PRITHLEAVKRILKYVHGTSDFG
Sbjct: 61  E-DHKLYRSIVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFG 120

Query: 121 MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 180
           MMYSYDTTP +VGYCDADWAGSADD KSTSGGCFFL NNLISWLSKKQNCVSLST EAEY
Sbjct: 121 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 180

Query: 181 MAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVR 240
           +AAGSGCTQLIWM+NML EYGFDQDTMTLYCDN SAIDISKNPVQHSRTKHIDIRHHF+R
Sbjct: 181 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 240

Query: 241 ELVEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCRT 285
           ELVEDKVIK DHIRSNLQL DIFTKPLDASSFEYL AGLGVCRT
Sbjct: 241 ELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCRT 283

[Close]

BLAST of Cmc02g0042911.1 vs. NCBI nr
Match: TYJ97126.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 486.9 bits (1252), Expect = 1.2e-133
Identity = 246/275 (89.45%), Postives = 247/275 (89.82%), Query Frame = 0


Query: 10  GLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAKVDHKLYRS 69
           GLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAKVDHKLYRS
Sbjct: 60  GLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAKVDHKLYRS 119

Query: 70  IAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMYSYDTTP 129
           IAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMYSYDTTP
Sbjct: 120 IAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMYSYDTTP 179

Query: 130 TIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEYMAAGSGCTQ 189
           TIVGYCDADWAGSADDPK+                            EAEYMAAGSGCTQ
Sbjct: 180 TIVGYCDADWAGSADDPKT----------------------------EAEYMAAGSGCTQ 239

Query: 190 LIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKVIK 249
           LIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKVIK
Sbjct: 240 LIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKVIK 299

Query: 250 FDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCRT 285
           FDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCRT
Sbjct: 300 FDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCRT 306

[Close]

BLAST of Cmc02g0042911.1 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 466.5 bits (1199), Expect = 1.7e-127
Identity = 226/264 (85.61%), Postives = 243/264 (92.05%), Query Frame = 0


Query: 1   MVGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGA 60
           MVG+LSCFLG QIKQKND I ISQ+KY ++M KKFGLEQARNKRTPAATHVKLT+D  GA
Sbjct: 116 MVGELSCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGA 175

Query: 61  KVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 120
           +VDHKLYRSI  +LLYLTASRPDIAYA+GI ARYQA+PRI+HLEAVKRILKYVHGT+DFG
Sbjct: 176 EVDHKLYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFG 235

Query: 121 MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 180
           MMYSYDTTPT+VGYCDADWAG ADD KSTSGGCFFL NNLI WLSKKQNCVSLST EAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 181 MAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVR 240
           + AGSGCTQLIWMEN+L EYGFDQ T+TLY DNMSAIDISKNPVQHSR KHIDIRHHF+R
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

Query: 241 ELVEDKVIKFDHIRSNLQLADIFT 265
           ELVEDKVI+ DHIRSNLQLADIFT
Sbjct: 356 ELVEDKVIRLDHIRSNLQLADIFT 379

[Close]

BLAST of Cmc02g0042911.1 vs. NCBI nr
Match: KAA0066740.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27888.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 427.6 bits (1098), Expect = 8.7e-116
Identity = 216/280 (77.14%), Postives = 233/280 (83.21%), Query Frame = 0


Query: 1   MVGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGA 60
           MVG+L CFLGLQI+QKND IFISQ+KY R++VKKFGLEQARNKRTPA THVKLTKD +GA
Sbjct: 116 MVGELLCFLGLQIRQKNDDIFISQKKYARNIVKKFGLEQARNKRTPATTHVKLTKDIEGA 175

Query: 61  KVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 120
           +VDHKLYRSI GSLLYLTASRPDIAYA+GI ARYQ  PRITHLEA+KRILKYVH T DFG
Sbjct: 176 EVDHKLYRSIVGSLLYLTASRPDIAYAMGIYARYQVVPRITHLEAIKRILKYVHRTCDFG 235

Query: 121 MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 180
           MMYSYDTTPT+VGYCDADWAGS DD K                             EAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGSTDDRK----------------------------IEAEY 295

Query: 181 MAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVR 240
           +AAGSGCTQLIWM+N+L EYGFDQDTMTLYC+NMSAIDISKN VQHSRTKHIDIRHHF+R
Sbjct: 296 IAAGSGCTQLIWMKNVLHEYGFDQDTMTLYCNNMSAIDISKNLVQHSRTKHIDIRHHFIR 355

Query: 241 ELVEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLG 281
           E VE+KVIK DHIRSNLQLA+IFTKPLDASSFEYL AGLG
Sbjct: 356 EPVEEKVIKLDHIRSNLQLANIFTKPLDASSFEYLCAGLG 367

[Close]

BLAST of Cmc02g0042911.1 vs. NCBI nr
Match: AAO73521.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 421.4 bits (1082), Expect = 6.2e-114
Identity = 197/282 (69.86%), Postives = 237/282 (84.04%), Query Frame = 0


Query: 1    MVGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGA 60
            +VG+L+ FLGLQ+KQ  D IF+SQ +Y +++VKKFG+E A +KRTPA TH+KL+KD  G 
Sbjct: 1288 LVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGT 1347

Query: 61   KVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 120
             VD  LYRS+ GSLLYLTASRPDI YA+G+ ARYQANP+I+HL  VKRILKYV+GTSD+G
Sbjct: 1348 SVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYG 1407

Query: 121  MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 180
            +MY + + P +VGYCDADWAGSADD KSTSGGCF+L NNLISW SKKQNCVSLSTAEAEY
Sbjct: 1408 IMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEY 1467

Query: 181  MAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVR 240
            +AAGS C+QL+WM+ ML EY  +QD MTLYCDNMSAI+ISKNPVQHSRTKHIDIRHH++R
Sbjct: 1468 IAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIR 1527

Query: 241  ELVEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLGVC 283
            +LV+DKVI   H+ +  Q+ADIFTK LDA+ FE L   LG+C
Sbjct: 1528 DLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGIC 1569

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 9.8e-54
Identity = 114/281 (40.57%), Postives = 174/281 (61.92%), Query Frame = 0


Query: 2    VGDLSCFLGLQIKQKNDG--IFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKG 61
            +G     LG++I ++     +++SQEKY+  ++++F ++ A+   TP A H+KL+K    
Sbjct: 1038 LGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCP 1097

Query: 62   AKVDHK------LYRSIAGSLLY-LTASRPDIAYAIGIRARYQANPRITHLEAVKRILKY 121
              V+ K       Y S  GSL+Y +  +RPDIA+A+G+ +R+  NP   H EAVK IL+Y
Sbjct: 1098 TTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRY 1157

Query: 122  VHGTSDFGMMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVS 181
            + GT+   + +   + P + GY DAD AG  D+ KS++G  F      ISW SK Q CV+
Sbjct: 1158 LRGTTGDCLCFG-GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVA 1217

Query: 182  LSTAEAEYMAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHI 241
            LST EAEY+AA     ++IW++  L E G  Q    +YCD+ SAID+SKN + H+RTKHI
Sbjct: 1218 LSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHI 1277

Query: 242  DIRHHFVRELVEDKVIKFDHIRSNLQLADIFTKPLDASSFE 274
            D+R+H++RE+V+D+ +K   I +N   AD+ TK +  + FE
Sbjct: 1278 DVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.5e-49
Identity = 106/281 (37.72%), Postives = 159/281 (56.58%), Query Frame = 0


Query: 4    DLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAKVD 63
            DL  FLG++ K+   G+ +SQ +Y   ++ +  +  A+   TP AT  KLT  +     D
Sbjct: 1165 DLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPD 1224

Query: 64   HKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMY 123
               YR I GSL YL  +RPD++YA+   ++Y   P   H  A+KR+L+Y+ GT D G+  
Sbjct: 1225 PTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFL 1284

Query: 124  SYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEYMAA 183
                T ++  Y DADWAG  DD  ST+G   +L ++ ISW SKKQ  V  S+ EAEY + 
Sbjct: 1285 KKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSV 1344

Query: 184  GSGCTQLIWMENMLLEYGFD-QDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVREL 243
             +  ++L W+ ++L E G        +YCDN+ A  +  NPV HSR KHI + +HF+R  
Sbjct: 1345 ANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQ 1404

Query: 244  VEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCR 284
            V+   ++  H+ ++ QLAD  TKPL   +F+     +GV +
Sbjct: 1405 VQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIK 1445

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.1e-48
Identity = 105/281 (37.37%), Postives = 163/281 (58.01%), Query Frame = 0


Query: 4    DLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAKVD 63
            +L  FLG++ K+   G+ +SQ +Y+  ++ +  +  A+   TP A   KL+  +     D
Sbjct: 1182 ELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTD 1241

Query: 64   HKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMY 123
               YR I GSL YL  +RPDI+YA+   +++   P   HL+A+KRIL+Y+ GT + G+  
Sbjct: 1242 PTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFL 1301

Query: 124  SYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEYMAA 183
                T ++  Y DADWAG  DD  ST+G   +L ++ ISW SKKQ  V  S+ EAEY + 
Sbjct: 1302 KKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSV 1361

Query: 184  GSGCTQLIWMENMLLEYGFD-QDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVREL 243
             +  +++ W+ ++L E G        +YCDN+ A  +  NPV HSR KHI I +HF+R  
Sbjct: 1362 ANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQ 1421

Query: 244  VEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCR 284
            V+   ++  H+ ++ QLAD  TKPL  ++F+   + +GV R
Sbjct: 1422 VQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTR 1462

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-45
Identity = 104/286 (36.36%), Postives = 167/286 (58.39%), Query Frame = 0


Query: 2    VGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAK 61
            + ++  F+G++I+ + D I++SQ  YV+ ++ KF +E      TP  +  K+  +   + 
Sbjct: 1117 LNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPS--KINYELLNSD 1176

Query: 62   VD-HKLYRSIAGSLLY-LTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDF 121
             D +   RS+ G L+Y +  +RPD+  A+ I +RY +       + +KR+L+Y+ GT D 
Sbjct: 1177 EDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDM 1236

Query: 122  GMMYSYDTT--PTIVGYCDADWAGSADDPKSTSGGCF-FLENNLISWLSKKQNCVSLSTA 181
             +++  +      I+GY D+DWAGS  D KST+G  F   + NLI W +K+QN V+ S+ 
Sbjct: 1237 KLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASST 1296

Query: 182  EAEYMAAGSGCTQLIWMENMLLEYGFD-QDTMTLYCDNMSAIDISKNPVQHSRTKHIDIR 241
            EAEYMA      + +W++ +L       ++ + +Y DN   I I+ NP  H R KHIDI+
Sbjct: 1297 EAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIK 1356

Query: 242  HHFVRELVEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLGV 282
            +HF RE V++ VI  ++I +  QLADIFTKPL A+ F  L   LG+
Sbjct: 1357 YHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-30
Identity = 72/192 (37.50%), Postives = 106/192 (55.21%), Query Frame = 0


Query: 2   VGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAK 61
           +G +  FLG+QIK    G+F+SQ KY   ++   G+   +   TP    +KL      AK
Sbjct: 36  LGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAK 95

Query: 62  V-DHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 121
             D   +RSI G+L YLT +RPDI+YA+ I  +    P +   + +KR+L+YV GT   G
Sbjct: 96  YPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHG 155

Query: 122 MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 181
           +    ++   +  +CD+DWAG     +ST+G C FL  N+ISW +K+Q  VS S+ E EY
Sbjct: 156 LYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEY 215

Query: 182 MAAGSGCTQLIW 193
            A      +L W
Sbjct: 216 RALALTAAELTW 225

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.8e-143
Identity = 253/284 (89.08%), Postives = 266/284 (93.66%), Query Frame = 0


Query: 1   MVGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGA 60
           MVG+LSCFLGLQIK+KNDGIFISQEKY ++MVKKFGLEQARNKRTP ATHVKLTKDT+  
Sbjct: 1   MVGELSCFLGLQIKRKNDGIFISQEKYAKNMVKKFGLEQARNKRTPTATHVKLTKDTEDV 60

Query: 61  KVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 120
           + DHKLYRSI GSLLYLTASRP+IAY +GI A YQA+PRITHLEAVKRILKYVHGTSDFG
Sbjct: 61  E-DHKLYRSIVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFG 120

Query: 121 MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 180
           MMYSYDTTP +VGYCDADWAGSADD KSTSGGCFFL NNLISWLSKKQNCVSLST EAEY
Sbjct: 121 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 180

Query: 181 MAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVR 240
           +AAGSGCTQLIWM+NML EYGFDQDTMTLYCDN SAIDISKNPVQHSRTKHIDIRHHF+R
Sbjct: 181 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 240

Query: 241 ELVEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCRT 285
           ELVEDKVIK DHIRSNLQL DIFTKPLDASSFEYL AGLGVCRT
Sbjct: 241 ELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCRT 283

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy TrEMBL
Match: A0A5D3BDQ5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1605G00020 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 5.8e-134
Identity = 246/275 (89.45%), Postives = 247/275 (89.82%), Query Frame = 0


Query: 10  GLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAKVDHKLYRS 69
           GLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAKVDHKLYRS
Sbjct: 60  GLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAKVDHKLYRS 119

Query: 70  IAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMYSYDTTP 129
           IAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMYSYDTTP
Sbjct: 120 IAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMYSYDTTP 179

Query: 130 TIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEYMAAGSGCTQ 189
           TIVGYCDADWAGSADDPK+                            EAEYMAAGSGCTQ
Sbjct: 180 TIVGYCDADWAGSADDPKT----------------------------EAEYMAAGSGCTQ 239

Query: 190 LIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKVIK 249
           LIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKVIK
Sbjct: 240 LIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKVIK 299

Query: 250 FDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCRT 285
           FDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCRT
Sbjct: 300 FDHIRSNLQLADIFTKPLDASSFEYLHAGLGVCRT 306

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 8.1e-128
Identity = 226/264 (85.61%), Postives = 243/264 (92.05%), Query Frame = 0


Query: 1   MVGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGA 60
           MVG+LSCFLG QIKQKND I ISQ+KY ++M KKFGLEQARNKRTPAATHVKLT+D  GA
Sbjct: 116 MVGELSCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGA 175

Query: 61  KVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 120
           +VDHKLYRSI  +LLYLTASRPDIAYA+GI ARYQA+PRI+HLEAVKRILKYVHGT+DFG
Sbjct: 176 EVDHKLYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFG 235

Query: 121 MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 180
           MMYSYDTTPT+VGYCDADWAG ADD KSTSGGCFFL NNLI WLSKKQNCVSLST EAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 181 MAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVR 240
           + AGSGCTQLIWMEN+L EYGFDQ T+TLY DNMSAIDISKNPVQHSR KHIDIRHHF+R
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

Query: 241 ELVEDKVIKFDHIRSNLQLADIFT 265
           ELVEDKVI+ DHIRSNLQLADIFT
Sbjct: 356 ELVEDKVIRLDHIRSNLQLADIFT 379

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy TrEMBL
Match: A0A5D3DWS6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00720 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 4.2e-116
Identity = 216/280 (77.14%), Postives = 233/280 (83.21%), Query Frame = 0


Query: 1   MVGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGA 60
           MVG+L CFLGLQI+QKND IFISQ+KY R++VKKFGLEQARNKRTPA THVKLTKD +GA
Sbjct: 116 MVGELLCFLGLQIRQKNDDIFISQKKYARNIVKKFGLEQARNKRTPATTHVKLTKDIEGA 175

Query: 61  KVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 120
           +VDHKLYRSI GSLLYLTASRPDIAYA+GI ARYQ  PRITHLEA+KRILKYVH T DFG
Sbjct: 176 EVDHKLYRSIVGSLLYLTASRPDIAYAMGIYARYQVVPRITHLEAIKRILKYVHRTCDFG 235

Query: 121 MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 180
           MMYSYDTTPT+VGYCDADWAGS DD K                             EAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGSTDDRK----------------------------IEAEY 295

Query: 181 MAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVR 240
           +AAGSGCTQLIWM+N+L EYGFDQDTMTLYC+NMSAIDISKN VQHSRTKHIDIRHHF+R
Sbjct: 296 IAAGSGCTQLIWMKNVLHEYGFDQDTMTLYCNNMSAIDISKNLVQHSRTKHIDIRHHFIR 355

Query: 241 ELVEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLG 281
           E VE+KVIK DHIRSNLQLA+IFTKPLDASSFEYL AGLG
Sbjct: 356 EPVEEKVIKLDHIRSNLQLANIFTKPLDASSFEYLCAGLG 367

[Close]

BLAST of Cmc02g0042911.1 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 3.0e-114
Identity = 197/282 (69.86%), Postives = 237/282 (84.04%), Query Frame = 0


Query: 1    MVGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGA 60
            +VG+L+ FLGLQ+KQ  D IF+SQ +Y +++VKKFG+E A +KRTPA TH+KL+KD  G 
Sbjct: 1288 LVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGT 1347

Query: 61   KVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 120
             VD  LYRS+ GSLLYLTASRPDI YA+G+ ARYQANP+I+HL  VKRILKYV+GTSD+G
Sbjct: 1348 SVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYG 1407

Query: 121  MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 180
            +MY + + P +VGYCDADWAGSADD KSTSGGCF+L NNLISW SKKQNCVSLSTAEAEY
Sbjct: 1408 IMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEY 1467

Query: 181  MAAGSGCTQLIWMENMLLEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVR 240
            +AAGS C+QL+WM+ ML EY  +QD MTLYCDNMSAI+ISKNPVQHSRTKHIDIRHH++R
Sbjct: 1468 IAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIR 1527

Query: 241  ELVEDKVIKFDHIRSNLQLADIFTKPLDASSFEYLHAGLGVC 283
            +LV+DKVI   H+ +  Q+ADIFTK LDA+ FE L   LG+C
Sbjct: 1528 DLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGIC 1569

[Close]

BLAST of Cmc02g0042911.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-39
Identity = 92/241 (38.17%), Postives = 130/241 (53.94%), Query Frame = 0


Query: 2   VGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAK 61
           +G L  FLGL+I +   GI I Q KY   ++ + GL   +    P    V  +  + G  
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 62  VDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGM 121
           VD K YR + G L+YL  +R DI++A+   +++   PR+ H +AV +IL Y+ GT   G+
Sbjct: 373 VDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432

Query: 122 MYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEYM 181
            YS      +  + DA +    D  +ST+G C FL  +LISW SKKQ  VS S+AEAEY 
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYR 492

Query: 182 AAGSGCTQLIWMENMLLEYGFDQDTMT-LYCDNMSAIDISKNPVQHSRTKHIDIRHHFVR 241
           A      +++W+     E        T L+CDN +AI I+ N V H RTKHI+   H VR
Sbjct: 493 ALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVR 552

[Close]

BLAST of Cmc02g0042911.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-31
Identity = 72/192 (37.50%), Postives = 106/192 (55.21%), Query Frame = 0


Query: 2   VGDLSCFLGLQIKQKNDGIFISQEKYVRSMVKKFGLEQARNKRTPAATHVKLTKDTKGAK 61
           +G +  FLG+QIK    G+F+SQ KY   ++   G+   +   TP    +KL      AK
Sbjct: 36  LGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAK 95

Query: 62  V-DHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFG 121
             D   +RSI G+L YLT +RPDI+YA+ I  +    P +   + +KR+L+YV GT   G
Sbjct: 96  YPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHG 155

Query: 122 MMYSYDTTPTIVGYCDADWAGSADDPKSTSGGCFFLENNLISWLSKKQNCVSLSTAEAEY 181
           +    ++   +  +CD+DWAG     +ST+G C FL  N+ISW +K+Q  VS S+ E EY
Sbjct: 156 LYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEY 215

Query: 182 MAAGSGCTQLIW 193
            A      +L W
Sbjct: 216 RALALTAAELTW 225

[Close]

BLAST of Cmc02g0042911.1 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-09
Identity = 26/79 (32.91%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 75  LYLTASRPDIAYAIGIRARYQANPRITHLEAVKRILKYVHGTSDFGMMYSYDTTPTIVGY 134
           +YLT +RPD+ +A+   +++ +  R   ++AV ++L YV GT   G+ YS  +   +  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 135 CDADWAGSADDPKSTSGGC 154
            D+DWA   D  +S +G C
Sbjct: 61  ADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc02g0042911.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055610.1	3.7e-143	89.08	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [...	[more]
TYJ97126.1	1.2e-133	89.45	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK23188.1	1.7e-127	85.61	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066740.1	8.7e-116	77.14	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27888.1 gag-pol polyprotein [...	[more]
AAO73521.1	6.2e-114	69.86	gag-pol polyprotein [Glycine max]	[more]

BLAST of Cmc02g0042911.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.8e-54	40.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.5e-49	37.72	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.1e-48	37.37	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	2.2e-45	36.36	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	2.0e-30	37.50	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0042911.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLL1	1.8e-143	89.08	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G...	[more]
A0A5D3BDQ5	5.8e-134	89.45	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1605...	[more]
A0A5D3DI97	8.1e-128	85.61	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A5D3DWS6	4.2e-116	77.14	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G...	[more]
Q84VI4	3.0e-114	69.86	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]

BLAST of Cmc02g0042911.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.4e-39	38.17	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.4e-31	37.50	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	2.0e-09	32.91	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 142..282
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 142..282
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 132..267 e-value: 2.53088E-79 score: 234.67
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 7..236

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc02g0042911	Cmc02g0042911	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc02g0042911.1-exon	Cmc02g0042911.1-exon-CMiso1.1chr02:4860640..4861494	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc02g0042911.1-cds	Cmc02g0042911.1-cds-CMiso1.1chr02:4860640..4861494	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc02g0042911.1	Cmc02g0042911.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding