Cmc02g0039411.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc02g0039411.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	RNA-dependent RNA polymerase
Location	CMiso1.1chr02: 1416054 .. 1423852 (+)
Sequence length	2914
RNA-Seq Expression	Cmc02g0039411.1
Synteny	Cmc02g0039411.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTTCAAACCTGGACTGAATGATACTCTTGCACTGAACTTACTTCCTCGCCTTCCTCTTCTTCTCCCGAATCTGAAGACAAATTCTATGTGTTCATAATTTAGGTATCGTTCTCAACGTACAAAATCTTTAATCCACTGCATAAAAATAATGCCAATGAAGACAATCCATCTCAGAAGTACAAAATTGAACTCTAATTCAACAAGTTTGCCTCACTCAGAATGTTAAACCTAAGCATTCAATAGTCTCACTCCATAAATTTGTTTCCATTTTACAGTTCACTCGCAGTTTCCTTTAATTGATTTTCCGATTATTTGGTAATCGCAGTTGTTGCCCGCTTACGGTAGAGACACTGTACTGCTAGGTTTGTAGGGGAAGTGTCTTCTCGATGTGAAAGGTGCCGAAGACTTTGGTCTTCTTCATAAAGACGCTTTTGAGCTCAGTGTGATACTTAGCCGTTGGATTGTGTACTTTGCATATCTTTTGACAGAGGAAAGAATCTTTAGGACAATGGGAAGTTGGGGAAGCTTTCGATTGACTTGACTTTGGAAAGGGTTAGTAAATGAGTTTGGATTGTCGTATTCTATTGATGAACATACCGAACAGTGTCCGCGGGAGGATAAAAGCAACTGTTTTTCAAAATGGGTTTTACTAAAGTAAACTGATTTGCACTTGGGGAGAAGAAATTTGCATTGTTTTGCTTTAGCTTTCACAATGGCTGATCATTTCTTGGAAGTCTCTCTTCCACCTTCGGTTGAGCATTTTCTTCTTCAGATATGTGAGCTACATGATCAGCCACTGCCGGATGCTGAAGTGCGATGGGCGTTAGCTTCAGTGGGGGAAGTAGCTGCTCTTGATGCTCTCCATAAGATCTCCTGTAGCTCCCCTGTAAGGAACCTTAGCGGTTTTATTCTGCATATGGTTCGTAAGGATTCTTGTGCTTCTCCTCAGAACAAGATGGTTCGTGTTTCTCCTCATCAGAGTCCTTCTTCCTGTTGCCGTGTTTCTCAGCTTCAGAGTCCTTCGACTTGCTCTGTTTCTTTGCATCAAAGTCTTTCAACTTTCTCTGTTAGTAGCGGCCAAGGTTCTTTGTTTTCCCTTTCTAGTGCTTCTGTTTTCGCTCTTCTGAAATAAGCATGTTTTAGCATGATTTTATTTGTTTGGTCCCCAGATATTGGAATATTGTGCCAGTTGTTTATATTGATTACTTTTTGTAGGGCTAGGAACTGCTGAGAATGCAAGCTTTCAGCCGCCAACTCCAGAAAAGTCCGGAAGCTTTTCATCTTCGGTTTCGGACAGAGCAAGGATTTCGCAATTTGTGGCTTTGGGAGAACTTGAGTTTAGGAAGGCATTTTTATTATTGAGTTACATTGGGGGGTACATAATTTCTTTCAGTTAAATTTGTTGTTGTGCTATTTTATATTGCTCTATGATGTAAATGACAATTTCACCCCTTAATTCCTGTAGAGAAAGCCTTGAAAGGGTCACAACAGCAGAGCAAATTCAAAGTCTAAGCCAATTAGCGATGGAAAAATTTGAGGACGAAGTTTGGAAAATATTTGGTAAAAAATACATTACTAATGAAGAACGACGAGTGGTAAATTTGATCATCATTCCTACTGCTGTATGATTATTTTCTTTTATGCCACAACAGCATGAGGAGATAAAAGTACAAACTGCCTTTCTTTCTAAAAGAGGTGCTTCTAGCTTTCAAAACAGATACCTCGATTGGGTGCTAAATGATCAATGAACCAACTACTAAAATGAAGTCAGAAGGTTCTGGCTTTTAATTGACTGCATGAAATTCCACTTTTAAAAATCAATGTTGTGTGTGTGTCTTGTTTGAGGGATTCCAAAATTTCATTGATAAATGTAATGAATAGATCACCTATGATAAATTACAAGGATTGCGAATTGCGTGATAAATGTTGTGGAAGTCTTGAATGTCAGACAAATCAAAGGCCATGGTCTTGCTTTCCTTCTATCTCTAAATTTTTCAAAATTTCAATTGGGTAAGGCATGGATCCCCCATGTCATTTTTCCCTCTGTTACCTTTCTTAGAACTTTGGAGTCCCCACTTCTGTGGGCCTTGGCCTCCCTCCTTATACTTCGTTTTCAATTTTAATTGTGCATTCTGAAAGAGAAGTTTCACATTTTCGTTGATCTTTATTTGTCACTACTTTCATTTTTCCTACATGATTGGAGTTATTGAGCTTGAGCTCATCCTTCATCGGAGAATCTTAGATGCAAACCAAGCACAAATCCTCAGCCAAACATTAGAGTTGATGATTTTATAAGGCTATTTTGAATAATAAACCAGCTTCCATTTCATTAAATGAACGTTTGAACGAATGGTTGGGTCTATAAAATAAAAAAAAGAAAAGCCTTAATACAATCTACTCTGAGATGTTGTGATTTTATTGGTAGATTGCATTATTGAATAAGAGACCATGGCTACTTTATGGGAACCAGGTTGAACGGTATTGATTTTGTAATTATCAGAACCTAATTTTGATGAACGTTTTGTTTTGTGAGTCGTTAGTTGGTTAGGCTGGGAACTTGTTTCTGTGACTCATTCTGAGGAGACACTTTTCTTTTTTATGTACTCTCTAGCTCTCTTAGTCTCTCCCTCCCTGTTACTCATTGTTGGTTCACTTTAAAATTTCAGCTTCCTCCTAGAACAATTCAAATCCGCGATTCTATGATCAAAGTTGAAATAGATCCAGATCTTGTAAATTTTGAAACAGAGAATTCACTGGAGTTAGTAGGGACCAGGTATCCAACATTTTATTTTCTTTTTCCCTATTTTGCTTTTGGCATGCTATTGGAGTTAAATGCCAATTTCCTTCTAATTTGCATTACGTACATACCAAGGGAAAAATGGAATGCTCAACTCTTGTTTCTGATGAAAGTATCTTAACTTGAGGGGGTATGGAATCTTTGGTATGGGGACCAATTATAGTGTATTAATTACTAGAGAGTTGAAATTTCTTTATATTAGTTCTAGGGACCTGATCTTCTTATGAGAGAAGATGATAATTTTGTTATTATTTTGTATTAGAAGTTATAATAGTTACTGCATCTGCAGATTTAACCATTGGAAAAGGAAATTTATGTTTTTGAGGATCCTTAAAAGAAATAAAAAAGAAAAAGGAATTTGATTCTGTGCAAAGGATTACTATTATTGTTGTCATAATTAATTATTTGATTTTATTTTCTTTAACAAAATGCTTCTTGGGCTTTTATGTTGGTCATATCAACCAATGGTGGTTTCTAGTCTCTTTGAGGTCTTCTTGCAAGTTTCCCTGCAACGGCCTTTTACTTGTATTTACCTTCAAAGAGTTTCTGTTAATGTGGCATTTTTCTTTCTCTAATCATCTGTCAGTAATCCCCCGAAGAGGACATTTCTTTCAAGAAATTTAATAGCACTCTTGAACTATGGAGGTGTTCCAAGAGAGTACTTCATGACTATCCTTGTGGATGCTTTAAAAGATGTTCAGGGTGTTTTCTCCAGTAAGCGTGCAGCTTTAAGAGGTATTAATCGTATTGAGCTGGTTTTTTTTCATCTCTTTCAAAATACTCTCACTTATTTATTGTTGATGCTCTCTCTCGGTCTCGGTTGATCTCTTGCAGTTTCCATTAACAATGGTGAAATGGATGACTTTCTGGTTGCAAGAATGATTTTAGCTGGCATTCCTCTTGATGAATCATATTTGCAATATCGCCTATCTGTGCTATTGAAGGAGGAGAAAAAGAGCTTGAAAAGTGGAAGACTTCACGTGCCTGAATGTTATTATTTAATGGGGACAGTCGATCCCACCTGTACACTTGAAAGCGGCGAAGTCTGTGTTATCCTGTATGTATTACATGCATGATATTTCAATTAGTCTTACTTAATTCCATGGAAGCATTGAGTGAAAACGTTATAATTTGTTCACAATTCAGTTTCGTAGCTACTGGATGAGAAGTGGAATGAGGATAAATATACAAGTACAGGAGGAGAACTGATTGTCATGGTTCTCACAATAGTTAGACGTAGACCCATTCCACTTTCTTACGATGTTCAAAAGATTTAAAAAATATTATTAAAGTTCATATAAATCATAATATCTTAATGCTATTCAATCTACTGAGAAACAAACATCTGATAAAGACTCATGGTAATTTACTTGTGTTACTTAAAATCCCTAGTTTTGTTTTGTTTTGTTCCCCCCCCCCCCCCCCCCCCCCCCTTTCGCACATGTAAATTGGTATTAACGTGTTCTATTTTCTCCCTCCAACTAGTGAAAATGGACAAATCAACGGGAAGGTTCTTGTTTATCGCAATCCTGGTCTACATTTTGGTGATATCCATGTTTTAACAGCTAAATATGTGGAGGAGTTGGTTCCTGTTGTTGGAAATGCGAAATATGCTATATTCTTTTCCAGTAAGGGTCCCCGTTCAGTAGCTGATGAAATAGCGGGTGGTGATTTTGACGGCGATATGTACTGGGTTTCCAGAAATTCGCAGGTTATTTCACATTCAAAATTCTGGCCTCAAAGTTCTATTACCTGAGTTTGGTTTCCTCAACTTACAAATGTCTATTGGCTATTAGTTCAATGGTTTCATGGATGTTCTATTTATTGGGTATGTTTTGTCATATTTTCTGCTCAGACTTTGGTTAAAAACTGTTCTGCCTTCACTTATTATGGAGTGAATGTACACATTTTAGCTTGATGTTCACGCAATCACGCATGCCTTTTAAGCTTATGAGCTATGCTTAATTAGTTCTATGGTTTTTTTGTCAGTATTTTCTATTCATGTCTTTGTTCAAACTATAATTTCTAGAAAAAAATTTATTTTCACATTCATTATAATTATTGAGTCCCTGCCTACCCATATACTGATTTCTTTATTTTCTATTTCTTCTTTGAGTTTTTTCAGTTGTTAGAGTATTTCAGACCATGTGAACCATGGAGGCCAAGTCCTTCAACGGAAGTAGTTACAAATAGAAAGCCGAAAGAATTTTCTGTCGAGGAATTGGAGAATGAGCTATTTAAACTATTCTTGTCTACTAGGTTTCAGCCAAGGTATGTGATGTTGTATTTGTCCATTTTTTTGGTCTGTCAAAATTTTTTTGTTATTTTTTTAAGCGGGGTGGTGTGTTATTTCATACTTTGACTAAGATGGAGTTTTCCAATAATTTTTCTCTGGTATGCTCAGTTATGCAAAGAGTGTTGCAGCTGATAACTGGTTGGCATTGATGGATCAGTTTCTAATGTTGGGTGAAGAGCGTAAAGAAGAAAGAAATCGTATAAGGGCAAAGATTCTGCAGTTGATCAATATATATTATGATGCTTTAGATGCACCTAAAAAAGGTGGGAAGAAGGTCAGTTCTACCTACATAGGGTTTGCTGTCTCTTCTTTATAATAATGTGAATTGTGTGTAATACTATTTATGTTCTCCAAAGATTTCCTAGGAAACAATACACGATTCGGAATTAGTTATTAAGCAAGTCATTAACTAGGAGCCTGGGGGGTTCATCATGGTTGGTTGGCACTTATTTCTTGAAGTACCCAACATGGAACTTGTTCTAATCTGCCTTGGTAGTCACAACTGATCTGATTTCTTTTGTTCTAATACTATATTCTGATTTTTATTTTTACAAGGGAAACAAGGTGATAAAAATGGGACAGTGAGATTGAAATTCATAAATACAAATAGAAACACAAATATATTGTTTTTTCAAAGAAATTTATAGAAGGTTGCTCATGCAGACGCTTCATCCTCTTCCAAGACTGTGTTAGGATCCCGTATATTAGAACACAGCAAAACACCTAGATAACTAGTAGGAGCCTAGGGCACTCTTCTAACCTTCAAAAAGGGGCATAATGTAAGGTACTAGATAAGAATATATTAGTATGATATTAGTAGTAAGGAGTATTAGGTTAATTAGATAGGAAGTTAGTTACATACCTAATCTTCTTGTAAATAGGGGGGGTGAGTGAGGGAGGCATATGTTGAGTGGTTTAAGGCTTGGGTTCACTCAAGAGGGAGGTTCTAAGTACCTTGAACTTGATTTATCTTGTATTTCTTCATAGTTATATTTCAATATATCCAAATCTTATTTGGAAGAATCCTAGCACATCTCTTCAAGCATGGAACAAACACTTCCCACTCCATTAGAGAGAGCTTTCTTGTCATCTCTCTATGAAATGAGAGAAAACCATTGGTTCATCGGTAAAGAAAGTGTTTTTCCACCTGAAATGTACCTCCCTCTCCCGTGTTCTTGCAACATCCCTAGATTCAAGGCTTTGTTTTGTATTGGTGTATATATATAGCATAAGGCACATTGCTCTTTGTTCTATGGTTGTTGATGTGTTTGAACGAATTAAGGGTTTTCATGTGTATTAGTTACTGAATAATTCCTTCTGTCGAGTAACATTATTTTTCTTCCCACCTGATGATAGATTGAAGTTCCAAAACACCTAAAGGCAGGAACTTTACCTCATTTCATGGAAAGGGGAAAAAATTCATATGTTTCAACTTCAATTCTTGGACAAATTTTTGACACCGTTAACATGTATCAAGAAGAAGTGCCAAACATTGGTCAGTGATTTAATATCCTATAATTACCATGTTAAAGTTCACTTAACAACAAGGGAACAGATTCTCTTTCAAGGCTCCTAATGCATCTGTATTACGTTGATAATTCAGAGGTTCAGAAACTTCCTTGCTTTGAAGAGGAAGTGCCCGAATATATCTTCATGAAGTGGAAGTTTCTCTATGAGTTGTACAGAAAAGACATGGTGGACGCCATGCAGCTTGATCCCGATGCCAAAAACATAGCTGCTGAAGCCACAATTAAGAAGTACAAGGAGGTAACTTCGTAATCCAGTGATCAACAATTTCTACAAACTGATTAATTGTTGTGGTAGCTTATCGGTTAAAATACCTATCTCAAAAGTTTGTTTAATTTTAGTTCTTATATTTTCAATTGTCTAATTTTAGGCACCGTACTTTTCATAAATTTTAAATTTGGTTCATGAGAGTTATTTTTATCGAAATTGATTAAATAATAACAAAAATTTTCAGTAAGGAAATGCACTTTGAATATATTTTCAAATTTTATAGTAAAACCACCCTAGACAACAATTCCTTTTTTTTTTAAAAAAAGAACAATAAACCATCATTAGAAACTAAATTTGGACTAAAATTGAACAAAGTAGAATCTACTGCATCATAAGTAAATGAGGTTGAAAAAGAAAGGGTTTGGAGATATTGGAATACTGTCATATCTTGGCTTTCTAGATCAGTAACTTAATAAAAAACATCTGTTGCTGTATCATGATTGTTCTTTATTTTTGGGATATAGATATTGTATGGTGCTGAAGAACTCGAGGGGAGCCCGAGGTCGAATGATGATGTATACCAGGAGGCTCTTGCAATTTATCAAGTTACATATGACCATGCCATGAGCCACAGTGTGCGCAATTGCGTCTTTGCATGGAAAGTTGCAGGTTCGGCTCTCTTCAAGCTCTATGCTATAAAACATTCTGAAAGAAGCTTTCTTTGTCTTCCTTCAGTTATGCGTGAGATTTTTAGTTAAATTATGTAATATAATATTACAAGCACAAGTGTATATCAAGATGTAAATAATCTAATGTAAAATCTTATCAGGGGGTTCTCATATAAACGTATAATCTAACCTAAATATTTAATATGTTCTATCTTATTATCCCTTGGTGATATGTCTCTAAATACTAGTTTTTCTCTCCCCACGAGTATGTGTGCACATAACGGGAAAAAATAATTC

mRNA sequence

CATTTTTCAAACCTGGACTGAATGATACTCTTGCACTGAACTTACTTCCTCGCCTTCCTCTTCTTCTCCCGAATCTGAAGACAAATTCTATGTGTTCATAATTTAGTTGTTGCCCGCTTACGGTAGAGACACTGTACTGCTAGGTTTGTAGGGGAAGTGTCTTCTCGATGTGAAAGGTGCCGAAGACTTTGGTCTTCTTCATAAAGACGCTTTTGAGCTCAGTGTGATACTTAGCCGTTGGATTGTGTACTTTGCATATCTTTTGACAGAGGAAAGAATCTTTAGGACAATGGGAAGTTGGGGAAGCTTTCGATTGACTTGACTTTGGAAAGGGTTAGTAAATGAGTTTGGATTGTCGTATTCTATTGATGAACATACCGAACAGTGTCCGCGGGAGGATAAAAGCAACTGTTTTTCAAAATGGGTTTTACTAAAGTAAACTGATTTGCACTTGGGGAGAAGAAATTTGCATTGTTTTGCTTTAGCTTTCACAATGGCTGATCATTTCTTGGAAGTCTCTCTTCCACCTTCGGTTGAGCATTTTCTTCTTCAGATATGTGAGCTACATGATCAGCCACTGCCGGATGCTGAAGTGCGATGGGCGTTAGCTTCAGTGGGGGAAGTAGCTGCTCTTGATGCTCTCCATAAGATCTCCTGTAGCTCCCCTGTAAGGAACCTTAGCGGTTTTATTCTGCATATGGTTCGTAAGGATTCTTGTGCTTCTCCTCAGAACAAGATGGTTCGTGTTTCTCCTCATCAGAGTCCTTCTTCCTGTTGCCGTGTTTCTCAGCTTCAGAGTCCTTCGACTTGCTCTGTTTCTTTGCATCAAAGTCTTTCAACTTTCTCTGTTAGTAGCGGCCAAGGGCTAGGAACTGCTGAGAATGCAAGCTTTCAGCCGCCAACTCCAGAAAAGTCCGGAAGCTTTTCATCTTCGGTTTCGGACAGAGCAAGGATTTCGCAATTTGTGGCTTTGGGAGAACTTGAGTTTAGGAAGGCATTTTTATTATTGAGTTACATTGGGGGAGAAAGCCTTGAAAGGGTCACAACAGCAGAGCAAATTCAAAGTCTAAGCCAATTAGCGATGGAAAAATTTGAGGACGAAGTTTGGAAAATATTTGGTAAAAAATACATTACTAATGAAGAACGACGAGTGCTTCCTCCTAGAACAATTCAAATCCGCGATTCTATGATCAAAGTTGAAATAGATCCAGATCTTGTAAATTTTGAAACAGAGAATTCACTGGAGTTAGTAGGGACCAGTAATCCCCCGAAGAGGACATTTCTTTCAAGAAATTTAATAGCACTCTTGAACTATGGAGGTGTTCCAAGAGAGTACTTCATGACTATCCTTGTGGATGCTTTAAAAGATGTTCAGGGTGTTTTCTCCAGTAAGCGTGCAGCTTTAAGAGTTTCCATTAACAATGGTGAAATGGATGACTTTCTGGTTGCAAGAATGATTTTAGCTGGCATTCCTCTTGATGAATCATATTTGCAATATCGCCTATCTGTGCTATTGAAGGAGGAGAAAAAGAGCTTGAAAAGTGGAAGACTTCACGTGCCTGAATGTTATTATTTAATGGGGACAGTCGATCCCACCTGTACACTTGAAAGCGGCGAAGTCTGTGTTATCCTTGAAAATGGACAAATCAACGGGAAGGTTCTTGTTTATCGCAATCCTGGTCTACATTTTGGTGATATCCATGTTTTAACAGCTAAATATGTGGAGGAGTTGGTTCCTGTTGTTGGAAATGCGAAATATGCTATATTCTTTTCCAGTAAGGGTCCCCGTTCAGTAGCTGATGAAATAGCGGGTGGTGATTTTGACGGCGATATGTACTGGGTTTCCAGAAATTCGCAGTTGTTAGAGTATTTCAGACCATGTGAACCATGGAGGCCAAGTCCTTCAACGGAAGTAGTTACAAATAGAAAGCCGAAAGAATTTTCTGTCGAGGAATTGGAGAATGAGCTATTTAAACTATTCTTGTCTACTAGGTTTCAGCCAAGTTATGCAAAGAGTGTTGCAGCTGATAACTGGTTGGCATTGATGGATCAGTTTCTAATGTTGGGTGAAGAGCGTAAAGAAGAAAGAAATCGTATAAGGGCAAAGATTCTGCAGTTGATCAATATATATTATGATGCTTTAGATGCACCTAAAAAAGGTGGGAAGAAGATTGAAGTTCCAAAACACCTAAAGGCAGGAACTTTACCTCATTTCATGGAAAGGGGAAAAAATTCATATGTTTCAACTTCAATTCTTGGACAAATTTTTGACACCGTTAACATGTATCAAGAAGAAGTGCCAAACATTGAGGTTCAGAAACTTCCTTGCTTTGAAGAGGAAGTGCCCGAATATATCTTCATGAAGTGGAAGTTTCTCTATGAGTTGTACAGAAAAGACATGGTGGACGCCATGCAGCTTGATCCCGATGCCAAAAACATAGCTGCTGAAGCCACAATTAAGAAGTACAAGGAGATATTGTATGGTGCTGAAGAACTCGAGGGGAGCCCGAGGTCGAATGATGATGTATACCAGGAGGCTCTTGCAATTTATCAAGTTACATATGACCATGCCATGAGCCACAGTGTGCGCAATTGCGTCTTTGCATGGAAAGTTGCAGGTTCGGCTCTCTTCAAGCTCTATGCTATAAAACATTCTGAAAGAAGCTTTCTTTGTCTTCCTTCAGTTATGCGTGAGATTTTTAGTTAAATTATGTAATATAATATTACAAGCACAAGTGTATATCAAGATGTAAATAATCTAATGTAAAATCTTATCAGGGGGTTCTCATATAAACGTATAATCTAACCTAAATATTTAATATGTTCTATCTTATTATCCCTTGGTGATATGTCTCTAAATACTAGTTTTTCTCTCCCCACGAGTATGTGTGCACATAACGGGAAAAAATAATTC

Coding sequence (CDS)

ATGGCTGATCATTTCTTGGAAGTCTCTCTTCCACCTTCGGTTGAGCATTTTCTTCTTCAGATATGTGAGCTACATGATCAGCCACTGCCGGATGCTGAAGTGCGATGGGCGTTAGCTTCAGTGGGGGAAGTAGCTGCTCTTGATGCTCTCCATAAGATCTCCTGTAGCTCCCCTGTAAGGAACCTTAGCGGTTTTATTCTGCATATGGTTCGTAAGGATTCTTGTGCTTCTCCTCAGAACAAGATGGTTCGTGTTTCTCCTCATCAGAGTCCTTCTTCCTGTTGCCGTGTTTCTCAGCTTCAGAGTCCTTCGACTTGCTCTGTTTCTTTGCATCAAAGTCTTTCAACTTTCTCTGTTAGTAGCGGCCAAGGGCTAGGAACTGCTGAGAATGCAAGCTTTCAGCCGCCAACTCCAGAAAAGTCCGGAAGCTTTTCATCTTCGGTTTCGGACAGAGCAAGGATTTCGCAATTTGTGGCTTTGGGAGAACTTGAGTTTAGGAAGGCATTTTTATTATTGAGTTACATTGGGGGAGAAAGCCTTGAAAGGGTCACAACAGCAGAGCAAATTCAAAGTCTAAGCCAATTAGCGATGGAAAAATTTGAGGACGAAGTTTGGAAAATATTTGGTAAAAAATACATTACTAATGAAGAACGACGAGTGCTTCCTCCTAGAACAATTCAAATCCGCGATTCTATGATCAAAGTTGAAATAGATCCAGATCTTGTAAATTTTGAAACAGAGAATTCACTGGAGTTAGTAGGGACCAGTAATCCCCCGAAGAGGACATTTCTTTCAAGAAATTTAATAGCACTCTTGAACTATGGAGGTGTTCCAAGAGAGTACTTCATGACTATCCTTGTGGATGCTTTAAAAGATGTTCAGGGTGTTTTCTCCAGTAAGCGTGCAGCTTTAAGAGTTTCCATTAACAATGGTGAAATGGATGACTTTCTGGTTGCAAGAATGATTTTAGCTGGCATTCCTCTTGATGAATCATATTTGCAATATCGCCTATCTGTGCTATTGAAGGAGGAGAAAAAGAGCTTGAAAAGTGGAAGACTTCACGTGCCTGAATGTTATTATTTAATGGGGACAGTCGATCCCACCTGTACACTTGAAAGCGGCGAAGTCTGTGTTATCCTTGAAAATGGACAAATCAACGGGAAGGTTCTTGTTTATCGCAATCCTGGTCTACATTTTGGTGATATCCATGTTTTAACAGCTAAATATGTGGAGGAGTTGGTTCCTGTTGTTGGAAATGCGAAATATGCTATATTCTTTTCCAGTAAGGGTCCCCGTTCAGTAGCTGATGAAATAGCGGGTGGTGATTTTGACGGCGATATGTACTGGGTTTCCAGAAATTCGCAGTTGTTAGAGTATTTCAGACCATGTGAACCATGGAGGCCAAGTCCTTCAACGGAAGTAGTTACAAATAGAAAGCCGAAAGAATTTTCTGTCGAGGAATTGGAGAATGAGCTATTTAAACTATTCTTGTCTACTAGGTTTCAGCCAAGTTATGCAAAGAGTGTTGCAGCTGATAACTGGTTGGCATTGATGGATCAGTTTCTAATGTTGGGTGAAGAGCGTAAAGAAGAAAGAAATCGTATAAGGGCAAAGATTCTGCAGTTGATCAATATATATTATGATGCTTTAGATGCACCTAAAAAAGGTGGGAAGAAGATTGAAGTTCCAAAACACCTAAAGGCAGGAACTTTACCTCATTTCATGGAAAGGGGAAAAAATTCATATGTTTCAACTTCAATTCTTGGACAAATTTTTGACACCGTTAACATGTATCAAGAAGAAGTGCCAAACATTGAGGTTCAGAAACTTCCTTGCTTTGAAGAGGAAGTGCCCGAATATATCTTCATGAAGTGGAAGTTTCTCTATGAGTTGTACAGAAAAGACATGGTGGACGCCATGCAGCTTGATCCCGATGCCAAAAACATAGCTGCTGAAGCCACAATTAAGAAGTACAAGGAGATATTGTATGGTGCTGAAGAACTCGAGGGGAGCCCGAGGTCGAATGATGATGTATACCAGGAGGCTCTTGCAATTTATCAAGTTACATATGACCATGCCATGAGCCACAGTGTGCGCAATTGCGTCTTTGCATGGAAAGTTGCAGGTTCGGCTCTCTTCAAGCTCTATGCTATAAAACATTCTGAAAGAAGCTTTCTTTGTCTTCCTTCAGTTATGCGTGAGATTTTTAGTTAA

Protein sequence

MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVRNLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVSSGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS

Homology

[Close]

BLAST of Cmc02g0039411.1 vs. NCBI nr
Match: XP_008450775.1 (PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo])

HSP 1 Score: 1348.2 bits (3488), Expect = 0.0e+00
Identity = 736/1017 (72.37%), Postives = 736/1017 (72.37%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV                    
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVYVDWDRRKTHIYHCYVALDG 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYVYNKIARDGILL 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 480

Query: 481  --------------------LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540
                                LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK
Sbjct: 481  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540

Query: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600
            RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR
Sbjct: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600

Query: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL 660
            MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL
Sbjct: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL 660

Query: 661  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720
            ENGQINGKVLVYRNPGLH GDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG
Sbjct: 661  ENGQINGKVLVYRNPGLHLGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720

Query: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 738
            GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR
Sbjct: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 780

[Close]

BLAST of Cmc02g0039411.1 vs. NCBI nr
Match: TYK10155.1 (putative RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 1347.0 bits (3485), Expect = 0.0e+00
Identity = 734/1017 (72.17%), Postives = 737/1017 (72.47%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFS+S
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 120

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERR+                    
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 480

Query: 481  --------------------LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540
                                LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK
Sbjct: 481  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540

Query: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600
            RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR
Sbjct: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600

Query: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL 660
            MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLH+PECYYLMGTVDPTCTLESGEVCVIL
Sbjct: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL 660

Query: 661  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720
            ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG
Sbjct: 661  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720

Query: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 738
            GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR
Sbjct: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 780

[Close]

BLAST of Cmc02g0039411.1 vs. NCBI nr
Match: XP_016900924.1 (PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis melo] >XP_016900925.1 PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis melo])

HSP 1 Score: 1337.4 bits (3460), Expect = 0.0e+00
Identity = 736/1045 (70.43%), Postives = 736/1045 (70.43%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV                    
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVYVDWDRRKTHIYHCYVALDG 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  SYRFKIFAAQSYNFYSVDQKLNLLQHGLKFLSSGPFLNNTKTHLQRVLGDDNVLMVKFAE 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  DKSDTHLPNHTGGSFYVYNKIARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFV 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  RMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLST 420

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 421  VKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKR 480

Query: 481  ------------------------------------------------LPPRTIQIRDSM 540
                                                            LPPRTIQIRDSM
Sbjct: 481  IPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSM 540

Query: 541  IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD 600
            IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD
Sbjct: 541  IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD 600

Query: 601  VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR 660
            VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR
Sbjct: 601  VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR 660

Query: 661  LHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEE 720
            LHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLH GDIHVLTAKYVEE
Sbjct: 661  LHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHLGDIHVLTAKYVEE 720

Query: 721  LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST 738
            LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST
Sbjct: 721  LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST 780

[Close]

BLAST of Cmc02g0039411.1 vs. NCBI nr
Match: XP_011659949.1 (probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 1271.1 bits (3288), Expect = 0.0e+00
Identity = 703/1020 (68.92%), Postives = 714/1020 (70.00%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MADHFLEVSLPPSVE FLL IC+LHDQPLPD EV  ALASVGEVAALDALHKISCS+ VR
Sbjct: 51   MADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCST-VR 110

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            NLSGFILH+VRKDSCASPQNKMVRVSPHQSPSS C VSQLQSPSTCSVSLHQS STFSV 
Sbjct: 111  NLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVC 170

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            SGQGLGTAENAS QPPTPEKSGSFSSSV DRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 171  SGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESL 230

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            ERVTTA+QIQSLSQL MEKFEDEVWKIFGKKY+TNEERRV                    
Sbjct: 231  ERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVYVDWDRRKTHIYHCHVALDG 290

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 291  SCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILL 350

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 351  GLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLF 410

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 411  MHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDGKPLIH 470

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 471  TDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREP 530

Query: 481  ------------------------LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTS 540
                                    LPPRTIQIRDSMIKVEIDPDL NFETENSLELVGTS
Sbjct: 531  PLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTS 590

Query: 541  NPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDF 600
            NPPKRTFLSRNLIALLNYGGVPREYFM ILVDALKDVQGVFSSKRAALRVSINNGEMDDF
Sbjct: 591  NPPKRTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDF 650

Query: 601  LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEV 660
            LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPT TLESGEV
Sbjct: 651  LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEV 710

Query: 661  CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVAD 720
            CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVE+LVPVVGNAKYAIFFSSKGPRSVAD
Sbjct: 711  CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVAD 770

Query: 721  EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLF 737
            EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTN+KPKEFS +ELENELFKLF
Sbjct: 771  EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLF 830

[Close]

BLAST of Cmc02g0039411.1 vs. NCBI nr
Match: XP_011659951.1 (probable RNA-dependent RNA polymerase 5 isoform X3 [Cucumis sativus])

HSP 1 Score: 1271.1 bits (3288), Expect = 0.0e+00
Identity = 703/1020 (68.92%), Postives = 714/1020 (70.00%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MADHFLEVSLPPSVE FLL IC+LHDQPLPD EV  ALASVGEVAALDALHKISCS+ VR
Sbjct: 1    MADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCST-VR 60

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            NLSGFILH+VRKDSCASPQNKMVRVSPHQSPSS C VSQLQSPSTCSVSLHQS STFSV 
Sbjct: 61   NLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVC 120

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            SGQGLGTAENAS QPPTPEKSGSFSSSV DRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            ERVTTA+QIQSLSQL MEKFEDEVWKIFGKKY+TNEERRV                    
Sbjct: 181  ERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVYVDWDRRKTHIYHCHVALDG 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  SCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILL 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  GLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLF 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREP 480

Query: 481  ------------------------LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTS 540
                                    LPPRTIQIRDSMIKVEIDPDL NFETENSLELVGTS
Sbjct: 481  PLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTS 540

Query: 541  NPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDF 600
            NPPKRTFLSRNLIALLNYGGVPREYFM ILVDALKDVQGVFSSKRAALRVSINNGEMDDF
Sbjct: 541  NPPKRTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDF 600

Query: 601  LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEV 660
            LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPT TLESGEV
Sbjct: 601  LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEV 660

Query: 661  CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVAD 720
            CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVE+LVPVVGNAKYAIFFSSKGPRSVAD
Sbjct: 661  CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVAD 720

Query: 721  EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLF 737
            EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTN+KPKEFS +ELENELFKLF
Sbjct: 721  EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLF 780

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy Swiss-Prot
Match: O82188 (Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana OX=3702 GN=RDR5 PE=2 SV=2)

HSP 1 Score: 548.9 bits (1413), Expect = 8.8e-155
Identity = 280/521 (53.74%), Postives = 374/521 (71.79%), Query Frame = 0


Query: 221 LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPRE 280
           L PRT+Q+R SMIKV  DP L NF T N+LE+V TSNPPKRT LS+NL+ALL+YGG+P E
Sbjct: 461 LCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNE 520

Query: 281 YFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVL 340
           +F+ IL++ L++ + +F +KRAAL  ++N GEMDD   A+MIL GIPLDE +L+  LS+L
Sbjct: 521 FFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGIPLDEPHLKNYLSIL 580

Query: 341 LKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFG 400
           LK EK  LK+G+L V E YYLMGTVDPT  L+  EVCVILE+GQI+G+VLVYRNPGLHFG
Sbjct: 581 LKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFG 640

Query: 401 DIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYF 460
           DIH+L A YV+ L   VGN+K+A+FF  KGPRS+ DEIAGGDFDGDMY++SRN +LLE F
Sbjct: 641 DIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENF 700

Query: 461 RPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMD 520
           +P EPW   +P ++  + R P + S EELE ELF++FL+  F  S    +AAD+WL +MD
Sbjct: 701 KPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMD 760

Query: 521 QFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGK 580
           +FL+LG++R EE+  ++ K+L+LI+IYYDALDAPKK G K+ +P  LK    PH+MER K
Sbjct: 761 RFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK-GDKVYLPNKLKPDIFPHYMERDK 820

Query: 581 NSYVSTSILGQIFDTVNMY--QEEVPNIEVQKLPCFEEE-VPEYIFMKWKFLYELYRKDM 640
             + STSILG IFD V     +E  P+ E+ KLPCFE+E V E+   K +  Y+ YR +M
Sbjct: 821 -KFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEM 880

Query: 641 VDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSH 700
             AM+ D D    +A   I++YK+  YGA   E S +S +++Y +ALA+Y++ YD+A+  
Sbjct: 881 TQAMKTDKDE---SANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHA 940

Query: 701 SVRNCVFAWKVAGSALFKLYAIKH-SERSFLCLPSVMREIF 737
            V  C F WKVAG  L + Y  K   E+  +C PSV++E++
Sbjct: 941 GVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELW 976

HSP 2 Score: 65.5 bits (158), Expect = 2.9e-09
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 129 ENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQ 188
           E  S     P      S        I Q VALGELEF+K FLLLSYI G+ + +V TA++
Sbjct: 103 EEMSVDSDAPSPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITADE 162

Query: 189 IQSLSQLAMEKFEDEVWKIFGKKYITNEERRVL 222
           I+    L M ++E  VW   G+ Y   ++RR+L
Sbjct: 163 IRLWKDLPMVEYEAAVWDRLGRHYCPQKDRRML 195

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy Swiss-Prot
Match: O82190 (Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=RDR3 PE=3 SV=2)

HSP 1 Score: 519.2 bits (1336), Expect = 7.4e-146
Identity = 277/529 (52.36%), Postives = 363/529 (68.62%), Query Frame = 0


Query: 212 YITNEERRVLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIAL 271
           ++TN++   LPPRT+Q+R SMIKV  D  L N  T NSLE+V TSNPP++  LSRNL+AL
Sbjct: 468 FLTNKK---LPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVAL 527

Query: 272 LNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDES 331
           L+YGGVP ++F+ IL + L++ + +F S+RAA + +IN G  DD   A MIL GIPLDE 
Sbjct: 528 LSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTADMILVGIPLDEP 587

Query: 332 YLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLV 391
           YL+ RLS LLK E+ +LK+GR  + E YY+MGTVDPT  L+  E+CVIL +GQI+G VLV
Sbjct: 588 YLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLV 647

Query: 392 YRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVS 451
           YRNPGLHFGDIHVL A YV+ L   VGNAK+A+FF  KGPRS+ DEIAGGDFDGDMY++S
Sbjct: 648 YRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFIS 707

Query: 452 RNSQLLEYFRPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVA 511
           RN +LLE+F+P EPW   S  +++   RKP E S EELE ELFK+FL  RF       +A
Sbjct: 708 RNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMA 767

Query: 512 ADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGT 571
           AD WL +MD FL LG+E  +E+   +  IL+LI+IYYDALDAPKKG  K+++P  L+   
Sbjct: 768 ADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGA-KVDLPPDLEIKN 827

Query: 572 LPHFMERG-KNSYVSTSILGQIFDTVNMYQ-EEVPNIEVQKLPCFEEE-VPEYIFMKWKF 631
            PH+MER  K  + STSILG IFDTV+ +  EE P  E+ KL  FE+E VP+    K+  
Sbjct: 828 FPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTS 887

Query: 632 LYELYRKDMVDA-MQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIY 691
            YE YR +M  A M+ D   +N      I++YK+  YGA   E S +S +++Y +ALA+Y
Sbjct: 888 WYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALY 947

Query: 692 QVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREI 736
            V YD+A+   V  C FAW VAG  L K Y  K  ++S +   SV++++
Sbjct: 948 NVVYDYAIQEGVAKCTFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKKL 990

HSP 2 Score: 88.2 bits (217), Expect = 4.2e-16
Identity = 72/215 (33.49%), Postives = 104/215 (48.37%), Query Frame = 0


Query: 7   EVSLPPSVEHFLLQICELHDQPLP-DAEVRWALASVGEVAALDALHKISCSSPVRNLSGF 66
           E++L  SVE  L +I E H+  LP   E R  L+S+ E  AL+ L K+     ++ L G 
Sbjct: 14  EIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDGL 73

Query: 67  ILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVSSGQGL 126
           I++ V+        +   R+SP +SP        +QSP T               + +  
Sbjct: 74  IMYFVKGTVTV---DGSPRLSPGESP--------VQSPRT--------------PAKKSC 133

Query: 127 GTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL-ERVT 186
             +++ S    TP               I   +ALGELEF+KAFLLLSYIGGESL E V 
Sbjct: 134 RASQDVSLDLETPSPKFMKREENGGSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVI 193

Query: 187 TAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERR 220
           + +QI+    L M  +E  VW   G++Y + +ERR
Sbjct: 194 SGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERR 203

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy Swiss-Prot
Match: O82189 (Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=RDR4 PE=3 SV=2)

HSP 1 Score: 460.3 bits (1183), Expect = 4.1e-128
Identity = 242/472 (51.27%), Postives = 328/472 (69.49%), Query Frame = 0


Query: 221 LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPRE 280
           LPP+T+Q+R SMIKV  D +L NF T NSLE+V TSNPPKR  LS+NL+ALL+YGGVP +
Sbjct: 465 LPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPND 524

Query: 281 YFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVL 340
           +F+ IL++ L+  + +F   RAA + +++ G MDD    +MI+AGIPLDE YL++ LS L
Sbjct: 525 FFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNALQMIMAGIPLDEPYLKHYLSKL 584

Query: 341 LKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFG 400
           LK EK  LK+G+L + E YYLMGTVDPT  L+  EV  + ++      VLVYRNPGLHFG
Sbjct: 585 LKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVSGLAKSQD----VLVYRNPGLHFG 644

Query: 401 DIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYF 460
           DIH+L A YV+ L   VGN+KY +FF  KGPRS+ DEIAGGDFDGDMY++SRN +LLE++
Sbjct: 645 DIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHY 704

Query: 461 RPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMD 520
           +P EPW   SP +++ T R+P E S E+LE ELFK+FL T F PS     AAD+WLA+MD
Sbjct: 705 KPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMD 764

Query: 521 QFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGK 580
           +FL LG+E  +E+  ++ K+L+L +IYYDA+DAPK  G ++ +P  +K    PH+MER K
Sbjct: 765 RFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKT-GTEVNLPLDVKVDLFPHYMERNK 824

Query: 581 NSYVSTSILGQIFDTVNMYQ-EEVPNIEVQKLPCFEEE-VPEYIFMKWKFLYELYRKDMV 640
            ++ STSILG IFDTV+ +  E+     + KL CFE+E V E+   K K  ++ YRK+M 
Sbjct: 825 -TFKSTSILGLIFDTVDFHNAEDTTPSGISKLQCFEDEPVSEFDMEKCKLWHKDYRKEMC 884

Query: 641 DAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVT 690
            AM  D D    +    I+KYK+  Y A   + S +  +++Y +ALA+Y VT
Sbjct: 885 QAMNSDDDD---SCNEVIQKYKQEFYSAAGFKESKKILEELYPKALALYNVT 927

HSP 2 Score: 65.9 bits (159), Expect = 2.3e-09
Identity = 66/218 (30.28%), Postives = 95/218 (43.58%), Query Frame = 0


Query: 7   EVSLPPSVEHFLLQICELHDQPLP-DAEVRWALASVGEVAALDALHKISCSSPVRNLSGF 66
           E++L  SVE  L ++   H+   P   E R  L+S+ E  AL+ L K+     V+ L G 
Sbjct: 19  EIALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGI 78

Query: 67  ILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVSSGQGL 126
           I++ +              V+   SP      S +Q P T                G+  
Sbjct: 79  IIYFLND-----------AVTVDGSPRLWSGESPVQFPRT---------------PGKKS 138

Query: 127 GTAENASFQPPTPEKSGSF--SSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERV 186
             A  A       + S  F       +   IS  +ALGELEF+KAFLLL+Y+GG+SL  V
Sbjct: 139 CRASQAEVSLDREDPSPKFLRGDENGESKHISLLLALGELEFKKAFLLLTYLGGKSLGEV 198

Query: 187 TTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVL 222
            + ++I+    L M  +E  VW   G+    NEER  L
Sbjct: 199 ISGDEIRQWKDLPMVAYERAVWFKLGQ----NEERMQL 206

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy Swiss-Prot
Match: Q5QMN4 (Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR4 PE=2 SV=2)

HSP 1 Score: 458.4 bits (1178), Expect = 1.6e-127
Identity = 246/542 (45.39%), Postives = 338/542 (62.36%), Query Frame = 0


Query: 221  LPPRTIQIRDSMIKVEIDPDLVNFETENSL---------------------ELVGTSNPP 280
            LPPRTI IR SM+K++  P+L   ++ NSL                     E+V TSN  
Sbjct: 635  LPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRS 694

Query: 281  KRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVA 340
             RTF S NLIALL+YGGVP E+FM +L  A+++          AL ++ N  +M+D + A
Sbjct: 695  GRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPA 754

Query: 341  RMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVI 400
            RMIL+GIPL+ESYLQ RL  L   E+K +K+G++ + +CYYLMGT DPT  L   EVCVI
Sbjct: 755  RMILSGIPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVI 814

Query: 401  LENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIA 460
            L+ GQ++G VLVY+ PGLH GDIHVL A Y  ++  VVGN+K+AI F + G RS+ADE+A
Sbjct: 815  LDYGQVSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMA 874

Query: 461  GGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLST 520
              DFDGD+YWVS N +LLE+F+P +PW P+ +      + P++F+  ELE  LF  FL T
Sbjct: 875  NSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKT 934

Query: 521  RFQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKK 580
            RF PSYA++ AA NWL  MD+ L +  + + E+  I  K+L+L+++YY ALDAPK  G K
Sbjct: 935  RFAPSYARATAATNWLVYMDRLLTVSLD-ESEKKLIEKKMLKLVDLYYLALDAPKM-GNK 994

Query: 581  IEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVN----MYQEEVPNIEVQKLPCF-E 640
            + +P+ L     PHFM+R   SY S+SILG+I+D       +  + V    +  LPCF E
Sbjct: 995  VNIPRDLMVKQYPHFMDRSP-SYHSSSILGKIYDKAGDPKPLRSDNVQPTSISSLPCFAE 1054

Query: 641  EEVPEYIFMKWKFLYELYRKD--MVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSP 700
             +VP  I   W+  Y  Y  D  ++ A + D + K I  +   +KYK +LYGA E E +P
Sbjct: 1055 RDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQELYEKYKHLLYGASEFEETP 1114

Query: 701  RSNDDVYQEALAIYQVTYDHAMS-HSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSV 734
            R  DDV+ EA AIYQ+ Y+ A S ++V  C FAWKVAG AL   Y +K+   + +C   +
Sbjct: 1115 RDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRALCHFYTVKNEGNAVVCSLQL 1173

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy Swiss-Prot
Match: Q5QMN5 (Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR3 PE=2 SV=2)

HSP 1 Score: 449.1 bits (1154), Expect = 9.5e-125
Identity = 251/545 (46.06%), Postives = 334/545 (61.28%), Query Frame = 0


Query: 219  RVLPPRTIQIRDSMIKVEIDPDL-----VN----------------FETENSLELVGTSN 278
            R LPP TI IR SM+K+E  P+L     VN                 ++ NS E+V TSN
Sbjct: 612  RRLPPATILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSN 671

Query: 279  PPKRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFL 338
             P+RT  SR LI LL YGGVP EYF+ +L  A++  +        ALR++ +  +M+D +
Sbjct: 672  RPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADMEDSM 731

Query: 339  VARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVC 398
             ARMIL+GIPL+ESYLQ+RL  + ++E+K +K G++ + ECYYLM T DPT TL   EVC
Sbjct: 732  SARMILSGIPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVC 791

Query: 399  VILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEEL-VPVVGNAKYAIFFSSKGPRSVAD 458
            VILENGQ +G VLVY++PGLHFGDIHVL A Y+ +L    VG AKYAI F   GPRS+AD
Sbjct: 792  VILENGQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLAD 851

Query: 459  EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLF 518
            E+A  DFDGD+YWVS+N +LLE+F+P EPW  +   +    +KP++ +  +LE  LF  F
Sbjct: 852  EMANSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEF 911

Query: 519  LSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKG 578
            L TRF PS+A   AAD+WLA MD+ L+     + E+  I  K+L+L+++YY ALDAPK  
Sbjct: 912  LKTRFTPSFALGTAADSWLAYMDR-LLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKT- 971

Query: 579  GKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQE----EVPNIEVQKLPC 638
            G K+ +P  L     PHFM R   SY S+SILGQI+D     +      V  I V  LPC
Sbjct: 972  GNKVNIPSDLMVKQYPHFMGR-SFSYHSSSILGQIYDKAEDVESLRSCNVQPIGVSLLPC 1031

Query: 639  F-EEEVPEYIFMKWKFLYELYRKD--MVDAMQLDPDAKNIAAEATIKKYKEILYGAEELE 698
            F E E P      W+  YE Y  D  M+    +D + +N+  +   +KYK +LY A E E
Sbjct: 1032 FMEREAPPAARHLWQHRYEEYLTDSTMLYRAMVDKEERNMKFQELYEKYKHMLYDASEFE 1091

Query: 699  GSPRSNDDVYQEALAIYQVTYDHA-MSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCL 734
             + R  DDV+ EA  IYQ+ Y+ A  S+    C FAWKVAG AL   YA+K+   + LC 
Sbjct: 1092 QTQRDPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNEGDTALCS 1151

HSP 2 Score: 56.6 bits (135), Expect = 1.4e-06
Identity = 50/195 (25.64%), Postives = 82/195 (42.05%), Query Frame = 0


Query: 34  VRWALASVGEVAALDALHKISCSSPVRNLSGFILHMVRKDSCASPQNKMVRVSPHQSPSS 93
           VR     V ++A L        +S V    G I       +  SP    + +     PS 
Sbjct: 159 VRQIARLVPQLAQLTVESPCGHTSSVSQNQGCIEVGTPTQAMVSPGLNQMALPCRCMPSG 218

Query: 94  CCRVSQLQSPSTCSVSLHQSLSTFSV----------SSGQGLGTAENASFQPPTPEKSGS 153
                ++ SP    +S  + +ST S            +G  +      +  P  P  +  
Sbjct: 219 LQNYIEIDSPIQPMISTPRRVSTPSSVQDISRLIENMAGPSVSPPSPITAMPQNPTTTCH 278

Query: 154 FSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQIQSLSQLAMEKFEDE 213
            + +    A   Q +AL EL FRK F++ +Y+  E +E V + + I+SL  L+M +FE +
Sbjct: 279 TTDNALREAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQ 338

Query: 214 VWKIFGKKYITNEER 219
           +W+ FG KYI   +R
Sbjct: 339 IWRTFGHKYIAASDR 353

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy TrEMBL
Match: A0A1S3BPE5 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103492255 PE=3 SV=1)

HSP 1 Score: 1348.2 bits (3488), Expect = 0.0e+00
Identity = 736/1017 (72.37%), Postives = 736/1017 (72.37%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV                    
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVYVDWDRRKTHIYHCYVALDG 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYVYNKIARDGILL 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 480

Query: 481  --------------------LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540
                                LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK
Sbjct: 481  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540

Query: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600
            RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR
Sbjct: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600

Query: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL 660
            MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL
Sbjct: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL 660

Query: 661  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720
            ENGQINGKVLVYRNPGLH GDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG
Sbjct: 661  ENGQINGKVLVYRNPGLHLGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720

Query: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 738
            GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR
Sbjct: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 780

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy TrEMBL
Match: A0A5D3CF42 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003000 PE=3 SV=1)

HSP 1 Score: 1347.0 bits (3485), Expect = 0.0e+00
Identity = 734/1017 (72.17%), Postives = 737/1017 (72.47%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFS+S
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 120

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERR+                    
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 480

Query: 481  --------------------LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540
                                LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK
Sbjct: 481  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540

Query: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600
            RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR
Sbjct: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600

Query: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL 660
            MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLH+PECYYLMGTVDPTCTLESGEVCVIL
Sbjct: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL 660

Query: 661  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720
            ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG
Sbjct: 661  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720

Query: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 738
            GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR
Sbjct: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 780

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy TrEMBL
Match: A0A1S4DYX6 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103492255 PE=3 SV=1)

HSP 1 Score: 1337.4 bits (3460), Expect = 0.0e+00
Identity = 736/1045 (70.43%), Postives = 736/1045 (70.43%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV                    
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVYVDWDRRKTHIYHCYVALDG 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  SYRFKIFAAQSYNFYSVDQKLNLLQHGLKFLSSGPFLNNTKTHLQRVLGDDNVLMVKFAE 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  DKSDTHLPNHTGGSFYVYNKIARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFV 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  RMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLST 420

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 421  VKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKR 480

Query: 481  ------------------------------------------------LPPRTIQIRDSM 540
                                                            LPPRTIQIRDSM
Sbjct: 481  IPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSM 540

Query: 541  IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD 600
            IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD
Sbjct: 541  IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD 600

Query: 601  VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR 660
            VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR
Sbjct: 601  VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR 660

Query: 661  LHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEE 720
            LHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLH GDIHVLTAKYVEE
Sbjct: 661  LHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHLGDIHVLTAKYVEE 720

Query: 721  LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST 738
            LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST
Sbjct: 721  LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST 780

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy TrEMBL
Match: A0A0A0LYP8 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G574860 PE=3 SV=1)

HSP 1 Score: 1271.1 bits (3288), Expect = 0.0e+00
Identity = 703/1020 (68.92%), Postives = 714/1020 (70.00%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MADHFLEVSLPPSVE FLL IC+LHDQPLPD EV  ALASVGEVAALDALHKISCS+ VR
Sbjct: 51   MADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCST-VR 110

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            NLSGFILH+VRKDSCASPQNKMVRVSPHQSPSS C VSQLQSPSTCSVSLHQS STFSV 
Sbjct: 111  NLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVC 170

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            SGQGLGTAENAS QPPTPEKSGSFSSSV DRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 171  SGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESL 230

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            ERVTTA+QIQSLSQL MEKFEDEVWKIFGKKY+TNEERRV                    
Sbjct: 231  ERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVYVDWDRRKTHIYHCHVALDG 290

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 291  SCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILL 350

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 351  GLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLF 410

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 411  MHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDGKPLIH 470

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 471  TDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREP 530

Query: 481  ------------------------LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTS 540
                                    LPPRTIQIRDSMIKVEIDPDL NFETENSLELVGTS
Sbjct: 531  PLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTS 590

Query: 541  NPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDF 600
            NPPKRTFLSRNLIALLNYGGVPREYFM ILVDALKDVQGVFSSKRAALRVSINNGEMDDF
Sbjct: 591  NPPKRTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDF 650

Query: 601  LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEV 660
            LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPT TLESGEV
Sbjct: 651  LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEV 710

Query: 661  CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVAD 720
            CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVE+LVPVVGNAKYAIFFSSKGPRSVAD
Sbjct: 711  CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVAD 770

Query: 721  EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLF 737
            EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTN+KPKEFS +ELENELFKLF
Sbjct: 771  EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLF 830

[Close]

BLAST of Cmc02g0039411.1 vs. ExPASy TrEMBL
Match: A0A6J1CTD3 (RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111014566 PE=3 SV=1)

HSP 1 Score: 1087.4 bits (2811), Expect = 0.0e+00
Identity = 619/1012 (61.17%), Postives = 660/1012 (65.22%), Query Frame = 0


Query: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60
            MAD F EV LPPSVE  LL+IC   +QP PDA+VR ALAS+GE AALD LHKIS S  VR
Sbjct: 1    MADQFQEVPLPPSVEQLLLEICMQQNQPPPDAKVRLALASLGEEAALDTLHKIS-SRAVR 60

Query: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120
            +L GFILHMVR D C +PQ KMV VSPHQSPSS   VS  QSPSTCSVS HQS ST  V 
Sbjct: 61   SLGGFILHMVRNDPC-TPQKKMVWVSPHQSPSS-SGVSPFQSPSTCSVSPHQSPSTCRVY 120

Query: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180
            S QGLGT E  SFQPPT EKSGSFSSSVSDRA I QFVALGELEFRKAFL+LSYIGGESL
Sbjct: 121  SPQGLGTTERTSFQPPTLEKSGSFSSSVSDRANIPQFVALGELEFRKAFLILSYIGGESL 180

Query: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRV-------------------- 240
            E V TA+QI+SLSQL MEKFE EVWK FG+K ++ E+RRV                    
Sbjct: 181  EMVATADQIRSLSQLPMEKFELEVWKTFGEKCVSKEDRRVNVDWDRRKTHIYHCYVALDG 240

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 241  SYKFKGPFLNNTKTHLQRVLGDDNVLMVKFAKDTSDRCSTNHLGGSFYAYNKIARDGILL 300

Query: 301  ------------------------------------------------------------ 360
                                                                        
Sbjct: 301  GLRQYCFFVFKDGGKEEKKKNPTASAVKCYFVRMESDAYLDKIRPYKLSNKTLFEARSLF 360

Query: 361  ------------------------------------------------------------ 420
                                                                        
Sbjct: 361  MHAHMVSSVASYMARFSLILSKSINLKIDLSTVNVQRIGDIPCKDVYGNVIYRDGKPLIH 420

Query: 421  ------------------------------------------------------------ 480
                                                                        
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDTNLKRFSAFEEFQNKTLQLTLPGLELREPFRLF 480

Query: 481  ---------------LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLS 540
                           LP RTIQIR+SMIKVEIDP+L N +TENS+E+VGTSN PK+TFLS
Sbjct: 481  YNGRAVKGTFLINKQLPSRTIQIRNSMIKVEIDPNLENAKTENSMEVVGTSNHPKKTFLS 540

Query: 541  RNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAG 600
            RNLIALLNYGGVPREYFM ILVDAL DVQGVFSSKRAALRVSINNG++DDFLVARMIL+G
Sbjct: 541  RNLIALLNYGGVPREYFMNILVDALSDVQGVFSSKRAALRVSINNGDLDDFLVARMILSG 600

Query: 601  IPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVILENGQI 660
            IPLDESYLQYRLS+LL+EEKKSLKSGRLHVP CYYLMGT DPTCTLES EVCVILENGQI
Sbjct: 601  IPLDESYLQYRLSMLLREEKKSLKSGRLHVPGCYYLMGTADPTCTLESDEVCVILENGQI 660

Query: 661  NGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDG 720
            NGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFS KGPRSVADEIAGGDFDG
Sbjct: 661  NGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSCKGPRSVADEIAGGDFDG 720

Query: 721  DMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSY 737
            DMYWVSRNSQLLEYFRP EPWRPSPS E +TN+KP EFS E+LE+ELFKLFL+TRFQPSY
Sbjct: 721  DMYWVSRNSQLLEYFRPGEPWRPSPSMEGITNKKPNEFSAEDLEDELFKLFLTTRFQPSY 780

[Close]

BLAST of Cmc02g0039411.1 vs. TAIR 10
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 548.9 bits (1413), Expect = 6.2e-156
Identity = 280/521 (53.74%), Postives = 374/521 (71.79%), Query Frame = 0


Query: 221 LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPRE 280
           L PRT+Q+R SMIKV  DP L NF T N+LE+V TSNPPKRT LS+NL+ALL+YGG+P E
Sbjct: 461 LCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNE 520

Query: 281 YFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVL 340
           +F+ IL++ L++ + +F +KRAAL  ++N GEMDD   A+MIL GIPLDE +L+  LS+L
Sbjct: 521 FFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGIPLDEPHLKNYLSIL 580

Query: 341 LKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFG 400
           LK EK  LK+G+L V E YYLMGTVDPT  L+  EVCVILE+GQI+G+VLVYRNPGLHFG
Sbjct: 581 LKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFG 640

Query: 401 DIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYF 460
           DIH+L A YV+ L   VGN+K+A+FF  KGPRS+ DEIAGGDFDGDMY++SRN +LLE F
Sbjct: 641 DIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENF 700

Query: 461 RPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMD 520
           +P EPW   +P ++  + R P + S EELE ELF++FL+  F  S    +AAD+WL +MD
Sbjct: 701 KPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMD 760

Query: 521 QFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGK 580
           +FL+LG++R EE+  ++ K+L+LI+IYYDALDAPKK G K+ +P  LK    PH+MER K
Sbjct: 761 RFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK-GDKVYLPNKLKPDIFPHYMERDK 820

Query: 581 NSYVSTSILGQIFDTVNMY--QEEVPNIEVQKLPCFEEE-VPEYIFMKWKFLYELYRKDM 640
             + STSILG IFD V     +E  P+ E+ KLPCFE+E V E+   K +  Y+ YR +M
Sbjct: 821 -KFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEM 880

Query: 641 VDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSH 700
             AM+ D D    +A   I++YK+  YGA   E S +S +++Y +ALA+Y++ YD+A+  
Sbjct: 881 TQAMKTDKDE---SANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHA 940

Query: 701 SVRNCVFAWKVAGSALFKLYAIKH-SERSFLCLPSVMREIF 737
            V  C F WKVAG  L + Y  K   E+  +C PSV++E++
Sbjct: 941 GVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELW 976

HSP 2 Score: 65.5 bits (158), Expect = 2.1e-10
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 129 ENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQ 188
           E  S     P      S        I Q VALGELEF+K FLLLSYI G+ + +V TA++
Sbjct: 103 EEMSVDSDAPSPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITADE 162

Query: 189 IQSLSQLAMEKFEDEVWKIFGKKYITNEERRVL 222
           I+    L M ++E  VW   G+ Y   ++RR+L
Sbjct: 163 IRLWKDLPMVEYEAAVWDRLGRHYCPQKDRRML 195

[Close]

BLAST of Cmc02g0039411.1 vs. TAIR 10
Match: AT2G19910.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 519.2 bits (1336), Expect = 5.3e-147
Identity = 277/529 (52.36%), Postives = 363/529 (68.62%), Query Frame = 0


Query: 212 YITNEERRVLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIAL 271
           ++TN++   LPPRT+Q+R SMIKV  D  L N  T NSLE+V TSNPP++  LSRNL+AL
Sbjct: 468 FLTNKK---LPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVAL 527

Query: 272 LNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDES 331
           L+YGGVP ++F+ IL + L++ + +F S+RAA + +IN G  DD   A MIL GIPLDE 
Sbjct: 528 LSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTADMILVGIPLDEP 587

Query: 332 YLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLV 391
           YL+ RLS LLK E+ +LK+GR  + E YY+MGTVDPT  L+  E+CVIL +GQI+G VLV
Sbjct: 588 YLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLV 647

Query: 392 YRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVS 451
           YRNPGLHFGDIHVL A YV+ L   VGNAK+A+FF  KGPRS+ DEIAGGDFDGDMY++S
Sbjct: 648 YRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFIS 707

Query: 452 RNSQLLEYFRPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVA 511
           RN +LLE+F+P EPW   S  +++   RKP E S EELE ELFK+FL  RF       +A
Sbjct: 708 RNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMA 767

Query: 512 ADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGT 571
           AD WL +MD FL LG+E  +E+   +  IL+LI+IYYDALDAPKKG  K+++P  L+   
Sbjct: 768 ADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGA-KVDLPPDLEIKN 827

Query: 572 LPHFMERG-KNSYVSTSILGQIFDTVNMYQ-EEVPNIEVQKLPCFEEE-VPEYIFMKWKF 631
            PH+MER  K  + STSILG IFDTV+ +  EE P  E+ KL  FE+E VP+    K+  
Sbjct: 828 FPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTS 887

Query: 632 LYELYRKDMVDA-MQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIY 691
            YE YR +M  A M+ D   +N      I++YK+  YGA   E S +S +++Y +ALA+Y
Sbjct: 888 WYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALY 947

Query: 692 QVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREI 736
            V YD+A+   V  C FAW VAG  L K Y  K  ++S +   SV++++
Sbjct: 948 NVVYDYAIQEGVAKCTFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKKL 990

HSP 2 Score: 88.2 bits (217), Expect = 3.0e-17
Identity = 72/215 (33.49%), Postives = 104/215 (48.37%), Query Frame = 0


Query: 7   EVSLPPSVEHFLLQICELHDQPLP-DAEVRWALASVGEVAALDALHKISCSSPVRNLSGF 66
           E++L  SVE  L +I E H+  LP   E R  L+S+ E  AL+ L K+     ++ L G 
Sbjct: 14  EIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDGL 73

Query: 67  ILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVSSGQGL 126
           I++ V+        +   R+SP +SP        +QSP T               + +  
Sbjct: 74  IMYFVKGTVTV---DGSPRLSPGESP--------VQSPRT--------------PAKKSC 133

Query: 127 GTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL-ERVT 186
             +++ S    TP               I   +ALGELEF+KAFLLLSYIGGESL E V 
Sbjct: 134 RASQDVSLDLETPSPKFMKREENGGSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVI 193

Query: 187 TAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERR 220
           + +QI+    L M  +E  VW   G++Y + +ERR
Sbjct: 194 SGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERR 203

[Close]

BLAST of Cmc02g0039411.1 vs. TAIR 10
Match: AT2G19920.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 460.3 bits (1183), Expect = 2.9e-129
Identity = 242/472 (51.27%), Postives = 328/472 (69.49%), Query Frame = 0


Query: 221 LPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPRE 280
           LPP+T+Q+R SMIKV  D +L NF T NSLE+V TSNPPKR  LS+NL+ALL+YGGVP +
Sbjct: 465 LPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPND 524

Query: 281 YFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVL 340
           +F+ IL++ L+  + +F   RAA + +++ G MDD    +MI+AGIPLDE YL++ LS L
Sbjct: 525 FFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNALQMIMAGIPLDEPYLKHYLSKL 584

Query: 341 LKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFG 400
           LK EK  LK+G+L + E YYLMGTVDPT  L+  EV  + ++      VLVYRNPGLHFG
Sbjct: 585 LKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVSGLAKSQD----VLVYRNPGLHFG 644

Query: 401 DIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYF 460
           DIH+L A YV+ L   VGN+KY +FF  KGPRS+ DEIAGGDFDGDMY++SRN +LLE++
Sbjct: 645 DIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHY 704

Query: 461 RPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMD 520
           +P EPW   SP +++ T R+P E S E+LE ELFK+FL T F PS     AAD+WLA+MD
Sbjct: 705 KPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMD 764

Query: 521 QFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGK 580
           +FL LG+E  +E+  ++ K+L+L +IYYDA+DAPK  G ++ +P  +K    PH+MER K
Sbjct: 765 RFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKT-GTEVNLPLDVKVDLFPHYMERNK 824

Query: 581 NSYVSTSILGQIFDTVNMYQ-EEVPNIEVQKLPCFEEE-VPEYIFMKWKFLYELYRKDMV 640
            ++ STSILG IFDTV+ +  E+     + KL CFE+E V E+   K K  ++ YRK+M 
Sbjct: 825 -TFKSTSILGLIFDTVDFHNAEDTTPSGISKLQCFEDEPVSEFDMEKCKLWHKDYRKEMC 884

Query: 641 DAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVT 690
            AM  D D    +    I+KYK+  Y A   + S +  +++Y +ALA+Y VT
Sbjct: 885 QAMNSDDDD---SCNEVIQKYKQEFYSAAGFKESKKILEELYPKALALYNVT 927

HSP 2 Score: 65.9 bits (159), Expect = 1.6e-10
Identity = 66/218 (30.28%), Postives = 95/218 (43.58%), Query Frame = 0


Query: 7   EVSLPPSVEHFLLQICELHDQPLP-DAEVRWALASVGEVAALDALHKISCSSPVRNLSGF 66
           E++L  SVE  L ++   H+   P   E R  L+S+ E  AL+ L K+     V+ L G 
Sbjct: 19  EIALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGI 78

Query: 67  ILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVSSGQGL 126
           I++ +              V+   SP      S +Q P T                G+  
Sbjct: 79  IIYFLND-----------AVTVDGSPRLWSGESPVQFPRT---------------PGKKS 138

Query: 127 GTAENASFQPPTPEKSGSF--SSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERV 186
             A  A       + S  F       +   IS  +ALGELEF+KAFLLL+Y+GG+SL  V
Sbjct: 139 CRASQAEVSLDREDPSPKFLRGDENGESKHISLLLALGELEFKKAFLLLTYLGGKSLGEV 198

Query: 187 TTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVL 222
            + ++I+    L M  +E  VW   G+    NEER  L
Sbjct: 199 ISGDEIRQWKDLPMVAYERAVWFKLGQ----NEERMQL 206

[Close]

BLAST of Cmc02g0039411.1 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 114.0 bits (284), Expect = 5.1e-25
Identity = 112/396 (28.28%), Postives = 176/396 (44.44%), Query Frame = 0


Query: 224 RTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFM 283
           R + +RDSM+K         F++ N +  V         FL+R +I LL+  G+    F 
Sbjct: 600 RKLSLRDSMLK---------FDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFE 659

Query: 284 TILVDALKDVQGVFSSKRAALRVSIN-NGEMDDFLVARMILAG-IPLDESYLQYRLSVLL 343
            +    L  +  +   + AAL V    +GE    L+ +M+L G  P  E YL   L V  
Sbjct: 660 AMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHH 719

Query: 344 KEEKKSLKSG-RLHVPECYYLMGTVDPTCTLESGEVCVIL-------------------- 403
           + +   LKS  R+ VP+   L+G +D    LE G+V V +                    
Sbjct: 720 ESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDE 779

Query: 404 ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 463
           E   + GKV+V +NP LH GDI VL A Y  E+          I F  KG R   +E +G
Sbjct: 780 ETSVVIGKVVVTKNPCLHPGDIRVLDAIY--EVHFEEKGYLDCIIFPQKGERPHPNECSG 839

Query: 464 GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 523
           GD DGD ++VS + +++       P    P  +   +R P+    +    E+ K F+   
Sbjct: 840 GDLDGDQFFVSWDEKII-------PSEMDPPMDYAGSR-PRLMDHDVTLEEIHKFFVDYM 899

Query: 524 FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 583
              +          L ++    ++  +R  E+ R + K L+L N++  A+D  K G    
Sbjct: 900 ISDT----------LGVISTAHLVHADRDPEKARSQ-KCLELANLHSRAVDFAKTGA-PA 959

Query: 584 EVPKHLKAGTLPHFMER-GKNSYVSTSILGQIFDTV 596
           E+P  LK    P F+ER  K +Y+S S+ G+++  V
Sbjct: 960 EMPYALKPREFPDFLERFEKPTYISESVFGKLYRAV 964

[Close]

BLAST of Cmc02g0039411.1 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-19
Identity = 125/478 (26.15%), Postives = 201/478 (42.05%), Query Frame = 0


Query: 200 FEDEVWKI---FGKKYITNEERRVLPPRTIQIRDSMIK--VEIDPD----------LVNF 259
           F D + KI   F +K           P   QIR    K  V +DP+          +  F
Sbjct: 534 FSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKF 593

Query: 260 ETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYF---MTILVDALKDVQGVFSSKR 319
           E+EN+   V   +  +  +++R LI LL+  GV    F      +VD L  +        
Sbjct: 594 ESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAH 653

Query: 320 AALRVSINNGEMDDFLVARMILAGIPLDESYL-----QYRLSVLLKEEKKSLKSGRLHVP 379
            AL + +  GE  + L A ++    P  E +L      +R S LL+   K+    R+ + 
Sbjct: 654 EALGL-MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKT----RIFIS 713

Query: 380 ECYYLMGTVDPTCTLESGEVCVILENGQ-------INGKVLVYRNPGLHFGDIHVLTAKY 439
               +MG +D T TLE G+V V   +         I G V+V +NP LH GD+ VL A  
Sbjct: 714 GGRSMMGCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLQAVN 773

Query: 440 VEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPS 499
               VP + +    + F  KG R   +E +G D DGD+Y+V  + +L+    P     P 
Sbjct: 774 ----VPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELV----PPRTSEPM 833

Query: 500 PSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERK 559
             T   T     + ++EE+E E F  ++      + +  + A+   A  D         K
Sbjct: 834 DYTPEPTQILDHDVTIEEVE-EYFANYI-----VNDSLGIIANAHTAFAD---------K 893

Query: 560 EERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMER-GKNSYVSTSIL 619
           E         ++L   +  A+D PK G   + +P+HL     P FME+  K +Y S +++
Sbjct: 894 EPLKAFSDPCIELAKKFSTAVDFPKTGVAAV-IPQHLYVKEYPDFMEKPDKPTYESKNVI 953

Query: 620 GQIFDTVNMYQEEVPNIEVQ---------------KLPCFEEEVPEYIFMKWKFLYEL 632
           G++F  V   +   P I ++               ++  FEE V E  + K  + ++L
Sbjct: 954 GKLFREVK--ERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKL 980

The following BLAST results are available for this feature:

BLAST of Cmc02g0039411.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450775.1	0.0e+00	72.37	PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo]	[more]
TYK10155.1	0.0e+00	72.17	putative RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_016900924.1	0.0e+00	70.43	PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis melo] >XP...	[more]
XP_011659949.1	0.0e+00	68.92	probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis sativus]	[more]
XP_011659951.1	0.0e+00	68.92	probable RNA-dependent RNA polymerase 5 isoform X3 [Cucumis sativus]	[more]

BLAST of Cmc02g0039411.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82188	8.8e-155	53.74	Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana OX=3702 GN=RDR5 ...	[more]
O82190	7.4e-146	52.36	Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=RDR3 ...	[more]
O82189	4.1e-128	51.27	Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=RDR4 ...	[more]
Q5QMN4	1.6e-127	45.39	Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q5QMN5	9.5e-125	46.06	Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp. japonica OX=39947...	[more]

BLAST of Cmc02g0039411.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPE5	0.0e+00	72.37	RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103492255 PE=3 SV=1	[more]
A0A5D3CF42	0.0e+00	72.17	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S4DYX6	0.0e+00	70.43	RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103492255 PE=3 SV=1	[more]
A0A0A0LYP8	0.0e+00	68.92	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G574860 PE=3 SV=...	[more]
A0A6J1CTD3	0.0e+00	61.17	RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111014566 PE=3...	[more]

BLAST of Cmc02g0039411.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19930.1	6.2e-156	53.74	RNA-dependent RNA polymerase family protein	[more]
AT2G19910.1	5.3e-147	52.36	RNA-dependent RNA polymerase family protein	[more]
AT2G19920.1	2.9e-129	51.27	RNA-dependent RNA polymerase family protein	[more]
AT4G11130.1	5.1e-25	28.28	RNA-dependent RNA polymerase 2	[more]
AT1G14790.1	1.4e-19	26.15	RNA-dependent RNA polymerase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 222..595 e-value: 2.0E-74 score: 251.3
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 219..736 coord: 7..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..146
None	No IPR available	PANTHER	PTHR23079:SF13	RNA-DEPENDENT RNA POLYMERASE 3-RELATED	coord: 219..736 coord: 7..220

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc02g0039411	Cmc02g0039411	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1416054..1416159	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1416383..1417139	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1417273..1417432	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1417523..1417652	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1418724..1418830	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1419441..1419589	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1419689..1419911	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1420340..1420565	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1420980..1421125	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1421259..1421424	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1422507..1422645	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1422754..1422917	exon
Cmc02g0039411.1-exon	Cmc02g0039411.1-exon-CMiso1.1chr02:1423412..1423852	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc02g0039411.1-five_prime_utr	Cmc02g0039411.1-five_prime_utr-CMiso1.1chr02:1416054..1416159	five_prime_UTR
Cmc02g0039411.1-five_prime_utr	Cmc02g0039411.1-five_prime_utr-CMiso1.1chr02:1416383..1416769	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1416770..1417139	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1417273..1417432	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1417523..1417652	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1418724..1418830	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1419441..1419589	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1419689..1419911	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1420340..1420565	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1420980..1421125	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1421259..1421424	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1422507..1422645	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1422754..1422917	CDS
Cmc02g0039411.1-cds	Cmc02g0039411.1-cds-CMiso1.1chr02:1423412..1423645	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc02g0039411.1-three_prime_utr	Cmc02g0039411.1-three_prime_utr-CMiso1.1chr02:1423646..1423852	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc02g0039411.1	Cmc02g0039411.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030422	production of siRNA involved in RNA interference
cellular_component	GO:0031380	nuclear RNA-directed RNA polymerase complex
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity