Cmc01g0013151.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013151.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr01: 9720536 .. 9720946 (+)
Sequence length	411
RNA-Seq Expression	Cmc01g0013151.1
Synteny	Cmc01g0013151.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAACCTACTGGCTTCCAAGACAAAACATGTCCTAATCATGTGTCTCTCCTCCACAAGAGTCTTTATGGTCTGAAACAGGCCCATCGCGCTTGGTTTGAACGATTTACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTACAGTTGATCCCTCATTATTCATTCGATCAGTCGAATCCTCTCTCACTTACTCACTTTTGTATGTAGATGACATCATTGTCACTGGACCTGACTATTTATACATTTCTGTTCTTAAAAACCAATTGGCTCTGGAATTCAAAATATCCGACCTTGGTCCTTTAAAGTACTTTCTTGGTCTCGAAATCCAATCCAATCCTCCATTGATGGCATATTTGCTAACCAAGCTAAATATCTCAATGATCTCCTCCACACATCGGGAATGA

mRNA sequence

ATGGCTCAACCTACTGGCTTCCAAGACAAAACATGTCCTAATCATGTGTCTCTCCTCCACAAGAGTCTTTATGGTCTGAAACAGGCCCATCGCGCTTGGTTTGAACGATTTACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTACAGTTGATCCCTCATTATTCATTCGATCAGTCGAATCCTCTCTCACTTACTCACTTTTGTATGTAGATGACATCATTGTCACTGGACCTGACTATTTATACATTTCTGTTCTTAAAAACCAATTGGCTCTGGAATTCAAAATATCCGACCTTGGTCCTTTAAAGTACTTTCTTGGTCTCGAAATCCAATCCAATCCTCCATTGATGGCATATTTGCTAACCAAGCTAAATATCTCAATGATCTCCTCCACACATCGGGAATGA

Coding sequence (CDS)

ATGGCTCAACCTACTGGCTTCCAAGACAAAACATGTCCTAATCATGTGTCTCTCCTCCACAAGAGTCTTTATGGTCTGAAACAGGCCCATCGCGCTTGGTTTGAACGATTTACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTACAGTTGATCCCTCATTATTCATTCGATCAGTCGAATCCTCTCTCACTTACTCACTTTTGTATGTAGATGACATCATTGTCACTGGACCTGACTATTTATACATTTCTGTTCTTAAAAACCAATTGGCTCTGGAATTCAAAATATCCGACCTTGGTCCTTTAAAGTACTTTCTTGGTCTCGAAATCCAATCCAATCCTCCATTGATGGCATATTTGCTAACCAAGCTAAATATCTCAATGATCTCCTCCACACATCGGGAATGA

Protein sequence

MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSNPPLMAYLLTKLNISMISSTHRE

Homology

[Close]

BLAST of Cmc01g0013151.1 vs. NCBI nr
Match: KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 3.6e-51
Identity = 105/114 (92.11%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           M QPTGFQ+KTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVAST DPSLFIRSV
Sbjct: 423 MTQPTGFQNKTCPNHVCLLHKSLYGLKQAPRAWFERFTSYLFTLGFVASTADPSLFIRSV 482

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSN 115
            SSLTY LLYVDDIIVTGPDYLYIS LKNQLALEFKISDLGPLKYFLGLEIQS+
Sbjct: 483 GSSLTYLLLYVDDIIVTGPDYLYISALKNQLALEFKISDLGPLKYFLGLEIQSS 536

[Close]

BLAST of Cmc01g0013151.1 vs. NCBI nr
Match: TYJ97594.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 8.8e-50
Identity = 104/114 (91.23%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           MAQPT FQDKTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVASTVDPSLFIRSV
Sbjct: 303 MAQPTSFQDKTCPNHVCLLHKSLYGLKQAPRAWFERFTSYLFTLGFVASTVDPSLFIRSV 362

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSN 115
            S LTY LLYV DIIVTGP+YLYISVLKNQLALEFKISD GPLKYFLGLEIQS+
Sbjct: 363 GSPLTYLLLYVYDIIVTGPNYLYISVLKNQLALEFKISDFGPLKYFLGLEIQSS 416

[Close]

BLAST of Cmc01g0013151.1 vs. NCBI nr
Match: KAA0056771.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 8.8e-50
Identity = 104/114 (91.23%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           MAQPT FQDKTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVASTVDPSLFIRSV
Sbjct: 303 MAQPTSFQDKTCPNHVCLLHKSLYGLKQAPRAWFERFTSYLFTLGFVASTVDPSLFIRSV 362

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSN 115
            S LTY LLYV DIIVTGP+YLYISVLKNQLALEFKISD GPLKYFLGLEIQS+
Sbjct: 363 GSPLTYLLLYVYDIIVTGPNYLYISVLKNQLALEFKISDFGPLKYFLGLEIQSS 416

[Close]

BLAST of Cmc01g0013151.1 vs. NCBI nr
Match: KAA0057165.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27148.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 8.2e-48
Identity = 101/114 (88.60%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           MAQPTGFQDKTCPNHV LL+KSLYGLKQA RAWFERF SYLFTL FVAST DPSLFIRSV
Sbjct: 61  MAQPTGFQDKTCPNHVCLLYKSLYGLKQAPRAWFERFRSYLFTLDFVASTADPSLFIRSV 120

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSN 115
            SSLTY LLYV +IIV GPDYLYI VLKNQLALEFKISDLGPLKYFLGLEIQS+
Sbjct: 121 GSSLTYLLLYVGNIIVAGPDYLYIFVLKNQLALEFKISDLGPLKYFLGLEIQSS 174

[Close]

BLAST of Cmc01g0013151.1 vs. NCBI nr
Match: TYK00083.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 5.9e-46
Identity = 97/115 (84.35%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           M+QPT FQDKTCPNHV LLHKSLYGLKQA RAWFE FTSYLFTLGFV S  DPSLFIRSV
Sbjct: 106 MSQPTAFQDKTCPNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVVSNADPSLFIRSV 165

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSNP 116
            SSLTY LLYVDDIIVTGPD  YIS+LK QLALEF+ISDLGPLKYFLGL+I S P
Sbjct: 166 GSSLTYLLLYVDDIIVTGPDSSYISLLKTQLALEFQISDLGPLKYFLGLKIHSLP 220

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-22
Identity = 54/115 (46.96%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 1    MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
            M+QP GF DK  PN+V  L K+LYGLKQA RAW+    +YL T+GFV S  D SLF+   
Sbjct: 1081 MSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQR 1140

Query: 61   ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSNP 116
              S+ Y L+YVDDI++TG D   +    + L+  F + D   L YFLG+E +  P
Sbjct: 1141 GKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVP 1195

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.2e-21
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 1    MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
            M+QP GF DK  P++V  L K++YGLKQA RAW+    +YL T+GFV S  D SLF+   
Sbjct: 1064 MSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQR 1123

Query: 61   ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSNPPLMAY 120
              S+ Y L+YVDDI++TG D + +    + L+  F + +   L YFLG+E +  P  +  
Sbjct: 1124 GRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHL 1183

Query: 121  LLTKLNISMISSTH 135
               +  + +++ T+
Sbjct: 1184 SQRRYTLDLLARTN 1197

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.3e-15
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 1    MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSL-FIRS 60
            M QP GF+     + V  L+KSLYGLKQA R W+ +F S++ +  ++ +  DP + F R 
Sbjct: 938  MEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRF 997

Query: 61   VESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEI 112
             E++    LLYVDD+++ G D   I+ LK  L+  F + DLGP +  LG++I
Sbjct: 998  SENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKI 1049

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 14   NHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFI--RSVESSLTYSLLYV 73
            ++V  L+K++YGLKQA R WFE F   L    FV S+VD  ++I  +   +   Y LLYV
Sbjct: 1029 DNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYV 1088

Query: 74   DDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQ 113
            DD+++   D   ++  K  L  +F+++DL  +K+F+G+ I+
Sbjct: 1089 DDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE 1129

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-11
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 3   QPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVES 62
           QP GF ++  P++V  L+  +YGLKQA   W E   + L  +GF     +  L+ RS   
Sbjct: 20  QPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSD 79

Query: 63  SLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSN 115
              Y  +YVDD++V  P       +K +L   + + DLG +  FLGL I  +
Sbjct: 80  GPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQS 131

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy TrEMBL
Match: A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.7e-51
Identity = 105/114 (92.11%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           M QPTGFQ+KTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVAST DPSLFIRSV
Sbjct: 423 MTQPTGFQNKTCPNHVCLLHKSLYGLKQAPRAWFERFTSYLFTLGFVASTADPSLFIRSV 482

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSN 115
            SSLTY LLYVDDIIVTGPDYLYIS LKNQLALEFKISDLGPLKYFLGLEIQS+
Sbjct: 483 GSSLTYLLLYVDDIIVTGPDYLYISALKNQLALEFKISDLGPLKYFLGLEIQSS 536

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy TrEMBL
Match: A0A5D3BEU0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00250 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.3e-50
Identity = 104/114 (91.23%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           MAQPT FQDKTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVASTVDPSLFIRSV
Sbjct: 303 MAQPTSFQDKTCPNHVCLLHKSLYGLKQAPRAWFERFTSYLFTLGFVASTVDPSLFIRSV 362

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSN 115
            S LTY LLYV DIIVTGP+YLYISVLKNQLALEFKISD GPLKYFLGLEIQS+
Sbjct: 363 GSPLTYLLLYVYDIIVTGPNYLYISVLKNQLALEFKISDFGPLKYFLGLEIQSS 416

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy TrEMBL
Match: A0A5A7UTE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00610 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.3e-50
Identity = 104/114 (91.23%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           MAQPT FQDKTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVASTVDPSLFIRSV
Sbjct: 303 MAQPTSFQDKTCPNHVCLLHKSLYGLKQAPRAWFERFTSYLFTLGFVASTVDPSLFIRSV 362

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSN 115
            S LTY LLYV DIIVTGP+YLYISVLKNQLALEFKISD GPLKYFLGLEIQS+
Sbjct: 363 GSPLTYLLLYVYDIIVTGPNYLYISVLKNQLALEFKISDFGPLKYFLGLEIQSS 416

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy TrEMBL
Match: A0A5D3DUH6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00270 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.0e-48
Identity = 101/114 (88.60%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           MAQPTGFQDKTCPNHV LL+KSLYGLKQA RAWFERF SYLFTL FVAST DPSLFIRSV
Sbjct: 61  MAQPTGFQDKTCPNHVCLLYKSLYGLKQAPRAWFERFRSYLFTLDFVASTADPSLFIRSV 120

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSN 115
            SSLTY LLYV +IIV GPDYLYI VLKNQLALEFKISDLGPLKYFLGLEIQS+
Sbjct: 121 GSSLTYLLLYVGNIIVAGPDYLYIFVLKNQLALEFKISDLGPLKYFLGLEIQSS 174

[Close]

BLAST of Cmc01g0013151.1 vs. ExPASy TrEMBL
Match: A0A5D3BJZ6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00340 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.9e-46
Identity = 97/115 (84.35%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSV 60
           M+QPT FQDKTCPNHV LLHKSLYGLKQA RAWFE FTSYLFTLGFV S  DPSLFIRSV
Sbjct: 106 MSQPTAFQDKTCPNHVCLLHKSLYGLKQAPRAWFESFTSYLFTLGFVVSNADPSLFIRSV 165

Query: 61  ESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSNP 116
            SSLTY LLYVDDIIVTGPD  YIS+LK QLALEF+ISDLGPLKYFLGL+I S P
Sbjct: 166 GSSLTYLLLYVDDIIVTGPDSSYISLLKTQLALEFQISDLGPLKYFLGLKIHSLP 220

[Close]

BLAST of Cmc01g0013151.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-19
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 1   MAQPTGFQ----DKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLF 60
           M  P G+     D   PN V  L KS+YGLKQA R WF +F+  L   GFV S  D + F
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYF 269

Query: 61  IRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEI 112
           ++   +     L+YVDDII+   +   +  LK+QL   FK+ DLGPLKYFLGLEI
Sbjct: 270 LKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324

[Close]

BLAST of Cmc01g0013151.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 66  YSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSNP 116
           Y LLYVDDI++TG     +++L  QL+  F + DLGP+ YFLG++I+++P
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHP 51

The following BLAST results are available for this feature:

BLAST of Cmc01g0013151.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061282.1	3.6e-51	92.11	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m...	[more]
TYJ97594.1	8.8e-50	91.23	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0056771.1	8.8e-50	91.23	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0057165.1	8.2e-48	88.60	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27148.1 putative m...	[more]
TYK00083.1	5.9e-46	84.35	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0013151.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.1e-22	46.96	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.2e-21	38.81	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	7.3e-15	40.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.3e-11	37.62	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	1.7e-11	33.93	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc01g0013151.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZE5	1.7e-51	92.11	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BEU0	4.3e-50	91.23	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UTE5	4.3e-50	91.23	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DUH6	4.0e-48	88.60	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BJZ6	2.9e-46	84.35	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Cmc01g0013151.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.9e-19	46.09	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.2e-07	48.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..114 e-value: 2.6E-25 score: 89.4
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..85
None	No IPR available	PANTHER	PTHR11439:SF331	SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED	coord: 1..85
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 12..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc01g0013151	Cmc01g0013151	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0013151.1-exon	Cmc01g0013151.1-exon-CMiso1.1chr01:9720536..9720946	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0013151.1-cds	Cmc01g0013151.1-cds-CMiso1.1chr01:9720536..9720946	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc01g0013151.1	Cmc01g0013151.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding