Cmc01g0012251.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc01g0012251.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	S-protein homolog
Location	CMiso1.1chr01: 8220209 .. 8220631 (+)
Sequence length	423
RNA-Seq Expression	Cmc01g0012251.1
Synteny	Cmc01g0012251.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCTTTTCAACATTTGCACTATGTCTTTTGATATCTATGTTTTTTTCTAGCTTATTCACTATCGAAGGAAAACCATTCCAAAATCCACTCGTTACAGTCAACATAACAAATGCTCTTACACATAAGGATCAACTCACCGTTCATTGCAAATCTGGCGATGACGACTTGGGAATCCACCAGCTGCAGCCTTTGGGTGGCTACGCCTTCACTTTTCGACCAAACTTCATTGGTACAACATTGTTTTACTGTACCTTCCAGTGGCCTGGTTGGTCACATAGCTTCGATATTTACAAGGATTCAAGAGATAGAGATCGTTGCAACGGTCTTTGTTTGTGGATTGTGGGTGAACAAGGTGTTTGTATGTTCCACTATGTTACCAAAAAGTATGATTTTTGCTATACGTGGGTGGATAAATGA

mRNA sequence

ATGGGTTCCTTTTCAACATTTGCACTATGTCTTTTGATATCTATGTTTTTTTCTAGCTTATTCACTATCGAAGGAAAACCATTCCAAAATCCACTCGTTACAGTCAACATAACAAATGCTCTTACACATAAGGATCAACTCACCGTTCATTGCAAATCTGGCGATGACGACTTGGGAATCCACCAGCTGCAGCCTTTGGGTGGCTACGCCTTCACTTTTCGACCAAACTTCATTGGTACAACATTGTTTTACTGTACCTTCCAGTGGCCTGGTTGGTCACATAGCTTCGATATTTACAAGGATTCAAGAGATAGAGATCGTTGCAACGGTCTTTGTTTGTGGATTGTGGGTGAACAAGGTGTTTGTATGTTCCACTATGTTACCAAAAAGTATGATTTTTGCTATACGTGGGTGGATAAATGA

Coding sequence (CDS)

ATGGGTTCCTTTTCAACATTTGCACTATGTCTTTTGATATCTATGTTTTTTTCTAGCTTATTCACTATCGAAGGAAAACCATTCCAAAATCCACTCGTTACAGTCAACATAACAAATGCTCTTACACATAAGGATCAACTCACCGTTCATTGCAAATCTGGCGATGACGACTTGGGAATCCACCAGCTGCAGCCTTTGGGTGGCTACGCCTTCACTTTTCGACCAAACTTCATTGGTACAACATTGTTTTACTGTACCTTCCAGTGGCCTGGTTGGTCACATAGCTTCGATATTTACAAGGATTCAAGAGATAGAGATCGTTGCAACGGTCTTTGTTTGTGGATTGTGGGTGAACAAGGTGTTTGTATGTTCCACTATGTTACCAAAAAGTATGATTTTTGCTATACGTGGGTGGATAAATGA

Protein sequence

MGSFSTFALCLLISMFFSSLFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVCMFHYVTKKYDFCYTWVDK

Homology

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BLAST of Cmc01g0012251.1 vs. NCBI nr
Match: XP_008465559.1 (PREDICTED: pumilio homolog 15-like, partial [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 9.3e-71
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 20  LFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIG 79
           LFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIG
Sbjct: 1   LFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIG 60

Query: 80  TTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVCMFHYVTKKYDFCYTWVD 139
           TTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVCMFHYVTKKYDFCYTWVD
Sbjct: 61  TTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVCMFHYVTKKYDFCYTWVD 120

Query: 140 K 141
           K
Sbjct: 121 K 121

[Close]

BLAST of Cmc01g0012251.1 vs. NCBI nr
Match: KAA0059530.1 (pumilio-like protein 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 19  SLFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFI 78
           +LFT EGKPFQNPLVTVNITNALTHKDQLTVHCKS DDDLG+HQLQPLGGYAFTFRPNFI
Sbjct: 78  NLFTTEGKPFQNPLVTVNITNALTHKDQLTVHCKSADDDLGVHQLQPLGGYAFTFRPNFI 137

Query: 79  GTTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVC 123
           GTTLFYCTFQW GWS++FDIYKDSRDRDRCN LCLWIVGEQGVC
Sbjct: 138 GTTLFYCTFQWLGWSYNFDIYKDSRDRDRCNDLCLWIVGEQGVC 181

[Close]

BLAST of Cmc01g0012251.1 vs. NCBI nr
Match: KGN61530.1 (hypothetical protein Csa_006387 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 9.1e-50
Identity = 96/139 (69.06%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MGSFSTFALCLLISMFFSSLFTIEGKPFQNPLVTVNITNALTH-KDQLTVHCKSGDDDLG 60
           M SFSTF L L IS+ F+++FTIEGKPFQ+P VTVNITNAL    +QLT+HCKSGDDDLG
Sbjct: 42  MSSFSTFGLSLFISLLFATIFTIEGKPFQSPPVTVNITNALKDVNNQLTIHCKSGDDDLG 101

Query: 61  IHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCNG-LCLWIVGE 120
           +HQL  L  YAF FRPNF G+TLFYC F W G SH F+IY+D RDR +CN  LCLWIVGE
Sbjct: 102 VHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSSHYFNIYQDLRDRAKCNDTLCLWIVGE 161

Query: 121 QGVCMFHYVTKKYDFCYTW 138
           QG+CMF Y T  YD CYTW
Sbjct: 162 QGLCMFDYKTNAYDICYTW 180

[Close]

BLAST of Cmc01g0012251.1 vs. NCBI nr
Match: XP_023522352.1 (S-protein homolog 5-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 3.2e-39
Identity = 82/121 (67.77%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 1   MGSFSTFALCLLISMFFSSLF-TIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLG 60
           M SFST A  LL+S+FF++LF TI+G  F++P +TVNITN L   +QL V CKS DDDL 
Sbjct: 30  MNSFSTLAFALLMSLFFTTLFTTIDGSIFKDPPMTVNITNVLKSHNQLAVRCKSSDDDLR 89

Query: 61  IHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCNG-LCLWIVGE 120
           IHQL PLGGYAFTF+PNF G+T FYCTF+W G+SH FDIYKD+RDR +CN  LCLWIVGE
Sbjct: 90  IHQLPPLGGYAFTFQPNFWGSTQFYCTFEWSGFSHYFDIYKDNRDRTKCNNTLCLWIVGE 149

[Close]

BLAST of Cmc01g0012251.1 vs. NCBI nr
Match: XP_022975116.1 (S-protein homolog 3-like, partial [Cucurbita maxima] >XP_022975285.1 S-protein homolog 3-like, partial [Cucurbita maxima] >XP_022975441.1 S-protein homolog 3-like, partial [Cucurbita maxima])

HSP 1 Score: 167.9 bits (424), Expect = 6.1e-38
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 13  ISMFFSSLF-TIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAF 72
           +S+ F++LF TI+G  F++P +TVNITN L   +QLTVHCKSGDDDLGIHQL  LGGYAF
Sbjct: 1   MSLSFTTLFTTIDGSIFKDPPITVNITNVLESHNQLTVHCKSGDDDLGIHQLPYLGGYAF 60

Query: 73  TFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCN-GLCLWIVGEQGV 122
           TFRPNF GTT FYCTFQWPG+S  FDIYKD RDR +CN  LCLWIVG+QG+
Sbjct: 61  TFRPNFWGTTQFYCTFQWPGFSQYFDIYKDYRDRIKCNKTLCLWIVGKQGI 111

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-23
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 34  TVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWS 93
           TV I N L ++  L  HCKS DDDLG   LQP   ++F+F   F G TL++C+F WP  S
Sbjct: 49  TVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNES 108

Query: 94  HSFDIYKDSRDR---DRC-NGLCLWIVGEQGVCMFHYVTKKYDFCYTW 138
           HSFDIYKD RD    ++C +  C+W +   G C F+  TK++D CY W
Sbjct: 109 HSFDIYKDHRDSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy Swiss-Prot
Match: Q9FMQ4 (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-23
Identity = 51/106 (48.11%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 35  VNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSH 94
           V ITN L     L +HCKS DDDLG+  L P G ++F FR + +GTTLFYC F WPG S 
Sbjct: 39  VRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSK 98

Query: 95  SFDIYKDSRDRDRCNGL---CLWIVGEQGVCMFHYVTKKYDFCYTW 138
            FDIY D RD  R +     C+W +  QG CMF      ++ CY W
Sbjct: 99  RFDIYDDDRDGVRSHISCINCIWDISIQGPCMFSESDHAFNICYDW 144

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy Swiss-Prot
Match: F4JZG1 (S-protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=SPH4 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-21
Identity = 53/131 (40.46%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 11  LLISMFFSSLFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYA 70
           LLI + FS +       +      V ITN L     L +HCKS DDDLG+  L P G ++
Sbjct: 16  LLIQIAFSQVKPGSDLKWSTLKSVVTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWS 75

Query: 71  FTFRPNFI-GTTLFYCTFQWPGWSHSFDIYKDSRDRDRCN---GLCLWIVGEQGVCMFHY 130
           F FRP+ + G TLF+C F WPG S  F+IY D RD  R       C+W +G+ G C F  
Sbjct: 76  FKFRPSIVPGVTLFFCHFTWPGQSKWFNIYDDDRDGVRMGIPCIYCIWDIGKYGPCRFSE 135

Query: 131 VTKKYDFCYTW 138
           +   ++ CY W
Sbjct: 136 IDDAFNICYDW 146

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy Swiss-Prot
Match: P0DN93 (S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-16
Identity = 48/137 (35.04%), Postives = 67/137 (48.91%), Query Frame = 0


Query: 1   MGSFSTFALCLLISMFFSSLFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGI 60
           M + S   + L I +F+         PF   +VTV  TN ++ +  LT+ C+S DDDLG 
Sbjct: 1   MKNSSKIFVVLSIILFYVISSCHGYNPFAKTVVTV--TNNISPQTTLTISCRSKDDDLGE 60

Query: 61  HQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQG 120
           H L     + + FRP++  TTLF C F W      FD Y+  RD+  C   C W +    
Sbjct: 61  HLLLHGQAFLWKFRPSWFRTTLFTCKFLWNNNVKWFDTYRSDRDQGHCYS-CNWSINADS 120

Query: 121 VCMFHYVTKKYDFCYTW 138
            C+     KK+D CY W
Sbjct: 121 ACISGNFNKKFDRCYPW 134

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy Swiss-Prot
Match: O23020 (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 49/128 (38.28%), Postives = 62/128 (48.44%), Query Frame = 0


Query: 12  LISMFFSSLF--TIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGY 71
           ++  FF  LF     G P       V +TN L     LT+HCKS  DDLGIH +     Y
Sbjct: 6   IVCFFFFLLFGSGYGGLPPFWRATVVTMTN-LIGGPPLTIHCKSKQDDLGIHVVPFKQEY 65

Query: 72  AFTFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVCMFHYVTK 131
            F F+PN   +TLF+C+FQW     SFDIY   RD+  C+  C W +   G C      K
Sbjct: 66  HFKFQPNLWKSTLFFCSFQWDSQFKSFDIYDAQRDQGICDD-CQWEIKPDGPCRLGKKAK 125

Query: 132 KYDFCYTW 138
               C+ W
Sbjct: 126 ----CFPW 127

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy TrEMBL
Match: A0A1S3CP53 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103503190 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.5e-71
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 20  LFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIG 79
           LFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIG
Sbjct: 1   LFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIG 60

Query: 80  TTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVCMFHYVTKKYDFCYTWVD 139
           TTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVCMFHYVTKKYDFCYTWVD
Sbjct: 61  TTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVCMFHYVTKKYDFCYTWVD 120

Query: 140 K 141
           K
Sbjct: 121 K 121

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy TrEMBL
Match: A0A5A7UWN1 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00420 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.5e-54
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 19  SLFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFI 78
           +LFT EGKPFQNPLVTVNITNALTHKDQLTVHCKS DDDLG+HQLQPLGGYAFTFRPNFI
Sbjct: 78  NLFTTEGKPFQNPLVTVNITNALTHKDQLTVHCKSADDDLGVHQLQPLGGYAFTFRPNFI 137

Query: 79  GTTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVC 123
           GTTLFYCTFQW GWS++FDIYKDSRDRDRCN LCLWIVGEQGVC
Sbjct: 138 GTTLFYCTFQWLGWSYNFDIYKDSRDRDRCNDLCLWIVGEQGVC 181

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy TrEMBL
Match: A0A0A0LI28 (S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_2G162130 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.4e-50
Identity = 96/139 (69.06%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MGSFSTFALCLLISMFFSSLFTIEGKPFQNPLVTVNITNALTH-KDQLTVHCKSGDDDLG 60
           M SFSTF L L IS+ F+++FTIEGKPFQ+P VTVNITNAL    +QLT+HCKSGDDDLG
Sbjct: 42  MSSFSTFGLSLFISLLFATIFTIEGKPFQSPPVTVNITNALKDVNNQLTIHCKSGDDDLG 101

Query: 61  IHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCNG-LCLWIVGE 120
           +HQL  L  YAF FRPNF G+TLFYC F W G SH F+IY+D RDR +CN  LCLWIVGE
Sbjct: 102 VHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSSHYFNIYQDLRDRAKCNDTLCLWIVGE 161

Query: 121 QGVCMFHYVTKKYDFCYTW 138
           QG+CMF Y T  YD CYTW
Sbjct: 162 QGLCMFDYKTNAYDICYTW 180

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy TrEMBL
Match: A0A6J1IDA7 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474089 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.0e-38
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 13  ISMFFSSLF-TIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAF 72
           +S+ F++LF TI+G  F++P +TVNITN L   +QLTVHCKSGDDDLGIHQL  LGGYAF
Sbjct: 1   MSLSFTTLFTTIDGSIFKDPPITVNITNVLESHNQLTVHCKSGDDDLGIHQLPYLGGYAF 60

Query: 73  TFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCN-GLCLWIVGEQGV 122
           TFRPNF GTT FYCTFQWPG+S  FDIYKD RDR +CN  LCLWIVG+QG+
Sbjct: 61  TFRPNFWGTTQFYCTFQWPGFSQYFDIYKDYRDRIKCNKTLCLWIVGKQGI 111

[Close]

BLAST of Cmc01g0012251.1 vs. ExPASy TrEMBL
Match: A0A6J1IDI1 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111475257 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.6e-38
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 13  ISMFFSSLF-TIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAF 72
           +S+FF++LF TI+   F++P +TVNITN L   +QLTVHCKSGDDDLGIHQL  LGGYAF
Sbjct: 1   MSLFFTTLFTTIDESIFKDPPITVNITNVLESHNQLTVHCKSGDDDLGIHQLPYLGGYAF 60

Query: 73  TFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRDRCN-GLCLWIVGEQGV 122
           TFRPNF G+T FYCTFQWPG+S  FDIYKD RDR +CN  LCLWIVG+QG+
Sbjct: 61  TFRPNFWGSTQFYCTFQWPGFSQYFDIYKDYRDRIKCNKTLCLWIVGKQGI 111

[Close]

BLAST of Cmc01g0012251.1 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-25
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 34  TVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWS 93
           TV I N L ++  L  HCKS DDDLG   LQP   ++F+F   F G TL++C+F WP  S
Sbjct: 49  TVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNES 108

Query: 94  HSFDIYKDSRDR---DRC-NGLCLWIVGEQGVCMFHYVTKKYDFCYTW 138
           HSFDIYKD RD    ++C +  C+W +   G C F+  TK++D CY W
Sbjct: 109 HSFDIYKDHRDSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of Cmc01g0012251.1 vs. TAIR 10
Match: AT5G12060.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-24
Identity = 51/106 (48.11%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 35  VNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSH 94
           V ITN L     L +HCKS DDDLG+  L P G ++F FR + +GTTLFYC F WPG S 
Sbjct: 39  VRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSK 98

Query: 95  SFDIYKDSRDRDRCNGL---CLWIVGEQGVCMFHYVTKKYDFCYTW 138
            FDIY D RD  R +     C+W +  QG CMF      ++ CY W
Sbjct: 99  RFDIYDDDRDGVRSHISCINCIWDISIQGPCMFSESDHAFNICYDW 144

[Close]

BLAST of Cmc01g0012251.1 vs. TAIR 10
Match: AT5G12070.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 53/131 (40.46%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 11  LLISMFFSSLFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYA 70
           LLI + FS +       +      V ITN L     L +HCKS DDDLG+  L P G ++
Sbjct: 16  LLIQIAFSQVKPGSDLKWSTLKSVVTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWS 75

Query: 71  FTFRPNFI-GTTLFYCTFQWPGWSHSFDIYKDSRDRDRCN---GLCLWIVGEQGVCMFHY 130
           F FRP+ + G TLF+C F WPG S  F+IY D RD  R       C+W +G+ G C F  
Sbjct: 76  FKFRPSIVPGVTLFFCHFTWPGQSKWFNIYDDDRDGVRMGIPCIYCIWDIGKYGPCRFSE 135

Query: 131 VTKKYDFCYTW 138
           +   ++ CY W
Sbjct: 136 IDDAFNICYDW 146

[Close]

BLAST of Cmc01g0012251.1 vs. TAIR 10
Match: AT3G17080.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 97.4 bits (241), Expect = 9.4e-21
Identity = 55/141 (39.01%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 1   MGSFSTFALCLLISMFFSSLFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGI 60
           MGS  T  L  ++ MF S++ +           +V I N L     L  HCKS +DDLG 
Sbjct: 1   MGSLETCLLFFVMVMFMSAIMS-------RASTSVVIYNDLGGGLPLRHHCKSREDDLGY 60

Query: 61  HQLQPLGGYAFTFRPNFIGTTLFYCTFQWPGWSHSFDIYKDSRDRD----RCNGLCLWIV 120
             L P   ++F F P+  G TLFYC F W   SH FDIYK SRD++     C   C W +
Sbjct: 61  QSLAPGRSWSFGFTPDIFGRTLFYCRFSWGAESHIFDIYKQSRDKEFQEFGCK-KCEWKI 120

Query: 121 GEQGVCMFHYVTKKYDFCYTW 138
            + G C F+  T  +D CY+W
Sbjct: 121 RKNGPCKFYKKTGMFDHCYSW 133

[Close]

BLAST of Cmc01g0012251.1 vs. TAIR 10
Match: AT3G16970.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-18
Identity = 46/113 (40.71%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 28  FQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIGTTLFYCTF 87
           F NP  TV I N L     L  HCKS +DDLG   +   G ++F FRP+  G TLF+C F
Sbjct: 23  FDNPRTTVVIYNDLGGHLPLRYHCKSKNDDLGDRNMAVNGTWSFEFRPSVFGGTLFFCGF 82

Query: 88  QWPGWSHSFDIYKDSRDRDRCN---GLCLWIVGEQGVCMFHYVTKKYDFCYTW 138
            W    H FDIYK SRDR+        C W + + G C  +  +  +D C  W
Sbjct: 83  IWDKELHWFDIYKQSRDREFAEFGCRRCEWKIRKDGPCKLNKNSNMFDVCLPW 135

The following BLAST results are available for this feature:

BLAST of Cmc01g0012251.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465559.1	9.3e-71	100.00	PREDICTED: pumilio homolog 15-like, partial [Cucumis melo]	[more]
KAA0059530.1	1.8e-53	92.31	pumilio-like protein 15-like [Cucumis melo var. makuwa]	[more]
KGN61530.1	9.1e-50	69.06	hypothetical protein Csa_006387 [Cucumis sativus]	[more]
XP_023522352.1	3.2e-39	67.77	S-protein homolog 5-like, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022975116.1	6.1e-38	71.17	S-protein homolog 3-like, partial [Cucurbita maxima] >XP_022975285.1 S-protein h...	[more]

BLAST of Cmc01g0012251.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLQ5	1.2e-23	47.22	S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1	[more]
Q9FMQ4	4.4e-23	48.11	S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1	[more]
F4JZG1	1.4e-21	40.46	S-protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=SPH4 PE=3 SV=1	[more]
P0DN93	5.2e-16	35.04	S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1	[more]
O23020	1.7e-14	38.28	S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1	[more]

BLAST of Cmc01g0012251.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CP53	4.5e-71	100.00	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103503190 PE=3 SV=1	[more]
A0A5A7UWN1	8.5e-54	92.31	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00...	[more]
A0A0A0LI28	4.4e-50	69.06	S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_2G162130 PE=3 SV=1	[more]
A0A6J1IDA7	3.0e-38	71.17	S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474089 PE=3 SV=1	[more]
A0A6J1IDI1	8.6e-38	70.27	S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111475257 PE=3 SV=1	[more]

BLAST of Cmc01g0012251.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16195.1	8.2e-25	47.22	Plant self-incompatibility protein S1 family	[more]
AT5G12060.1	3.1e-24	48.11	Plant self-incompatibility protein S1 family	[more]
AT5G12070.1	1.0e-22	40.46	Plant self-incompatibility protein S1 family	[more]
AT3G17080.1	9.4e-21	39.01	Plant self-incompatibility protein S1 family	[more]
AT3G16970.1	1.2e-18	40.71	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 34..137 e-value: 1.9E-32 score: 111.9
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 7..137
None	No IPR available	PANTHER	PTHR31232:SF76	S-PROTEIN HOMOLOG 2	coord: 7..137
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 16..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc01g0012251	Cmc01g0012251	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0012251.1-exon	Cmc01g0012251.1-exon-CMiso1.1chr01:8220209..8220631	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc01g0012251.1-cds	Cmc01g0012251.1-cds-CMiso1.1chr01:8220209..8220631	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc01g0012251.1	Cmc01g0012251.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane