Cmc01g0008651.1 (mRNA) Melon (Charmono) v1.1

Overview
NameCmc01g0008651.1
TypemRNA
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr01: 3502278 .. 3502806 (-)
Sequence length365
RNA-Seq ExpressionCmc01g0008651.1
SyntenyCmc01g0008651.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAATCCCTCACTCCTCTCATACTCCTCCATTGAATCGAACTCGTACTTCGGATACTTCTTCTTACTTCCATACGATCCATTTTCTTCGTCATTCTTCGAGTTAATATCATGAAAATACCTTCCATTCTCCATGAATCTGGTATCGCTCATCCCTTGCTGCTCTGTCGGTTCGAATCGGCTCCTCCTGTAGCCGCCGTCTTCAAAATTGCTCTGGTACTGGTAATTTCTACCCTCATTGTTATTGTTCTCGTACTCGGAATTTCTGTACTCGTTGTGGTTCTCGTACTCGGAATTTCTAAACCCATTGTTGTACTCATAGTTCTTGTTCTGGTACTGCTCCTCGTCATCTCTCGTTTGAACAAAATTGTTCATCGGAAACTCAGATTTACGATTCGTCTCGTCCTGATCGCCTTCTCCTCCGAGAATCTCCTCTTCCACGTCGGTAATCGTCCGAGGGTTTTCATCGGCGTCGGGATCACTGCCGTATAGACCGTAAGCATTCTGCGATTCGTCGAAGAATGGCGCGGG

mRNA sequence

GCAATCCCTCACTCCTCTCATACTCCTCCATTGAATCGAACTCGTACTTCGGATACTTCTTCTTACTTCCATACGATCCATTTTCTTCGTCATTCTTCGAGTTAATATCATGAAAATACCTTCCATTCTCCATGAATCTGGTATCGCTCATCCCTTGCTGCTCTGTCGGTTCGAATCGGCTCCTCCTGTAGCCGCCGTCTTCAAAATTGCTCTGGTACTGATTTACGATTCGTCTCGTCCTGATCGCCTTCTCCTCCGAGAATCTCCTCTTCCACGTCGGTAATCGTCCGAGGGTTTTCATCGGCGTCGGGATCACTGCCGTATAGACCGTAAGCATTCTGCGATTCGTCGAAGAATGGCGCGGG

Coding sequence (CDS)

ATGAAAATACCTTCCATTCTCCATGAATCTGGTATCGCTCATCCCTTGCTGCTCTGTCGGTTCGAATCGGCTCCTCCTGTAGCCGCCGTCTTCAAAATTGCTCTGGTACTGATTTACGATTCGTCTCGTCCTGATCGCCTTCTCCTCCGAGAATCTCCTCTTCCACGTCGGTAA

Protein sequence

MKIPSILHESGIAHPLLLCRFESAPPVAAVFKIALVLIYDSSRPDRLLLRESPLPRR
Homology
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BLAST of Cmc01g0008651.1 vs. ExPASy TrEMBL
Match: A0A0A0K6N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038950 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 1  MKIPSILHESGIAHPLLLCRFESAPPVAAVFKIALVLIYDSSRPDRLLLRESPL 55
          MKIPSILHESGIAHP LLCRFESAPPV A+FKI LVL+  +     L+LR S L
Sbjct: 1  MKIPSILHESGIAHPFLLCRFESAPPVPALFKIPLVLVISTLIVIVLVLRISVL 54

The following BLAST results are available for this feature:
BLAST of Cmc01g0008651.1 vs.
Match NameE-valueIdentityDescription
BLAST of Cmc01g0008651.1 vs.
Match NameE-valueIdentityDescription
BLAST of Cmc01g0008651.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6N91.2e-0970.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038950 PE=4 SV=1[more]
BLAST of Cmc01g0008651.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cmc01g0008651Cmc01g0008651gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc01g0008651.1-exonCmc01g0008651.1-exon-CMiso1.1chr01:3502278..3502422exon
Cmc01g0008651.1-exonCmc01g0008651.1-exon-CMiso1.1chr01:3502587..3502806exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc01g0008651.1-three_prime_utrCmc01g0008651.1-three_prime_utr-CMiso1.1chr01:3502278..3502359three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc01g0008651.1-cdsCmc01g0008651.1-cds-CMiso1.1chr01:3502360..3502422CDS
Cmc01g0008651.1-cdsCmc01g0008651.1-cds-CMiso1.1chr01:3502587..3502697CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cmc01g0008651.1-five_prime_utrCmc01g0008651.1-five_prime_utr-CMiso1.1chr01:3502698..3502806five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cmc01g0008651.1Cmc01g0008651.1-proteinpolypeptide