Cmc00g0001301.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc00g0001301.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribosomal protein S13
Location	CMiso1.1chr00: 1371622 .. 1371972 (+)
Sequence length	351
RNA-Seq Expression	Cmc00g0001301.1
Synteny	Cmc00g0001301.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATATATTTCAGGAGCAAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACTCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCATATTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGA

mRNA sequence

ATGTCATATATTTCAGGAGCAAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACTCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCATATTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGA

Coding sequence (CDS)

ATGTCATATATTTCAGGAGCAAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACTCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCATATTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGA

Protein sequence

MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK

Homology

[Close]

BLAST of Cmc00g0001301.1 vs. NCBI nr
Match: AEN56112.1 (ribosomal protein S13 [Cucumis melo subsp. melo] >AZP40311.1 ribosomal protein S13 [Cucumis melo var. momordica])

HSP 1 Score: 233.4 bits (594), Expect = 9.8e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI
Sbjct: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
Sbjct: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. NCBI nr
Match: YP_009913633.1 (ribosomal protein S13 [Luffa acutangula] >QLJ93026.1 ribosomal protein S13 [Luffa acutangula])

HSP 1 Score: 231.1 bits (588), Expect = 4.9e-57
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARSVADKQVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI
Sbjct: 1   MSYISGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
Sbjct: 61  GQDHIVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. NCBI nr
Match: XP_038887163.1 (ribosomal protein S13, mitochondrial [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 1.8e-56
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARSV DKQVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI
Sbjct: 1   MSYISGARSVPDKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
Sbjct: 61  GQDHIVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. NCBI nr
Match: YP_009565407.1 (ribosomal protein S13 [Morus notabilis] >QBB08764.1 ribosomal protein S13 [Morus notabilis])

HSP 1 Score: 223.8 bits (569), Expect = 7.8e-55
Identity = 109/116 (93.97%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARSVAD+QVRIAST++DGIGPKKAIQVRYRLGISGNIKIKELTKYQID+IEQMI
Sbjct: 1   MSYISGARSVADEQVRIASTKMDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDKIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRTHTNARTCRK IRK
Sbjct: 61  GQDHVVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRTHTNARTCRKLIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. NCBI nr
Match: YP_003587259.1 (ribosomal protein S13 [Citrullus lanatus] >ACV96649.1 ribosomal protein S13 [Citrullus lanatus])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGAR VADKQVRIA T+IDGIGPKKAIQV YRLGISGNIKIKELTKYQIDQIEQMI
Sbjct: 1   MSYISGARFVADKQVRIALTKIDGIGPKKAIQVCYRLGISGNIKIKELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
Sbjct: 61  GQDHIVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy Swiss-Prot
Match: P05488 (Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 215.7 bits (548), Expect = 2.8e-55
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           M YISGAR V D+QVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI
Sbjct: 1   MLYISGARLVGDEQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDH+VHWELKRGERADIER IS+SCYRGIRHQDG PLRGQRTHTNARTCRK IRK
Sbjct: 61  GQDHVVHWELKRGERADIERLISISCYRGIRHQDGSPLRGQRTHTNARTCRKLIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy Swiss-Prot
Match: P23209 (Ribosomal protein S13, mitochondrial OS=Daucus carota OX=4039 GN=RPS13 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 105/116 (90.52%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           M YISGAR VADKQVRIA T++ GIGPKKAIQV YRLGISGNIKIKELTKYQIDQ+EQMI
Sbjct: 1   MLYISGARLVADKQVRIALTKMYGIGPKKAIQVCYRLGISGNIKIKELTKYQIDQMEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRTHTNARTCRK+IRK
Sbjct: 61  GQDHVVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRTHTNARTCRKQIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy Swiss-Prot
Match: P08977 (Ribosomal protein S13, mitochondrial OS=Zea mays OX=4577 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 204.9 bits (520), Expect = 4.9e-52
Identity = 101/116 (87.07%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARS+ D+QVRIAST++DGIGPKKAIQ+RYRLGISGNIKI ELTKYQIDQIEQMI
Sbjct: 1   MSYISGARSLPDEQVRIASTKMDGIGPKKAIQLRYRLGISGNIKIHELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
            QDH+VHWELKRGERADIER IS+S YRGIRHQDG PLRGQRTHTNART RK+IRK
Sbjct: 61  AQDHVVHWELKRGERADIERLISISRYRGIRHQDGSPLRGQRTHTNARTARKQIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy Swiss-Prot
Match: P07924 (Ribosomal protein S13, mitochondrial OS=Triticum aestivum OX=4565 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 8.3e-52
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARS+ D+QVRIAST++DGIGPKKAIQ+RYRLGISGNIK+ ELTKYQIDQIEQMI
Sbjct: 1   MSYISGARSLPDEQVRIASTKMDGIGPKKAIQLRYRLGISGNIKMNELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
            QDH+VHWELKRGERADIER IS+S YRGIRHQDG PLRGQRTHTNART RK+IRK
Sbjct: 61  AQDHVVHWELKRGERADIERLISISRYRGIRHQDGSPLRGQRTHTNARTARKQIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy Swiss-Prot
Match: P15758 (Ribosomal protein S13, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-51
Identity = 103/116 (88.79%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGAR VAD+QVRIAST++DGIGPKKAIQVR RLG  GNIK KELTKYQIDQIEQM 
Sbjct: 1   MSYISGARLVADEQVRIASTKMDGIGPKKAIQVRSRLG--GNIKRKELTKYQIDQIEQMR 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQR+HTNART RKRIRK
Sbjct: 61  GQDHVVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRSHTNARTSRKRIRK 114

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy TrEMBL
Match: G3EU28 (Ribosomal protein S13 OS=Cucumis melo subsp. melo OX=412675 GN=rps13 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI
Sbjct: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
Sbjct: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy TrEMBL
Match: A0A3S9JII2 (Ribosomal protein S13 OS=Cucumis melo var. momordica OX=2034244 GN=rps13 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI
Sbjct: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
Sbjct: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy TrEMBL
Match: A0A7D6C5F5 (Ribosomal protein S13 OS=Luffa acutangula OX=56866 GN=rps13 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARSVADKQVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI
Sbjct: 1   MSYISGARSVADKQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
Sbjct: 61  GQDHIVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy TrEMBL
Match: A0A411GS20 (Ribosomal protein S13 OS=Morus notabilis OX=981085 GN=rps13 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.8e-55
Identity = 109/116 (93.97%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGARSVAD+QVRIAST++DGIGPKKAIQVRYRLGISGNIKIKELTKYQID+IEQMI
Sbjct: 1   MSYISGARSVADEQVRIASTKMDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDKIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRTHTNARTCRK IRK
Sbjct: 61  GQDHVVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRTHTNARTCRKLIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. ExPASy TrEMBL
Match: D5I3C9 (Ribosomal protein S13 OS=Citrullus lanatus OX=3654 GN=rps13 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.9e-55
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI 60
           MSYISGAR VADKQVRIA T+IDGIGPKKAIQV YRLGISGNIKIKELTKYQIDQIEQMI
Sbjct: 1   MSYISGARFVADKQVRIALTKIDGIGPKKAIQVCYRLGISGNIKIKELTKYQIDQIEQMI 60

Query: 61  GQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 117
           GQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
Sbjct: 61  GQDHIVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK 116

[Close]

BLAST of Cmc00g0001301.1 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 4   ISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQD 63
           +  A    +K ++    ++ GIG +K+ QV   LGI+  +  ++LT  ++  + + +GQ 
Sbjct: 34  VGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKL-ARDLTGKELIDLREEVGQ- 93

Query: 64  HIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNART 110
           H    EL+R   ++I+R + + CYRG RH+ GLP RGQRT TNART
Sbjct: 94  HQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNART 137

[Close]

BLAST of Cmc00g0001301.1 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 4   ISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQD 63
           + G    A+K++  +   I GIG  +A Q+   L +   I  K++ + ++  +   + + 
Sbjct: 50  VGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKI-TKDMAEEELIILRDEVSK- 109

Query: 64  HIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTCR 112
           +++  +L+R     I+R   + CYRG+RH  GLP RGQRT  N RT +
Sbjct: 110 YMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK 155

[Close]

BLAST of Cmc00g0001301.1 vs. TAIR 10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 34/118 (28.81%), Postives = 52/118 (44.07%), Query Frame = 0


Query: 13  KQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIG---QDHIVHWE 72
           +++  A T I GIG + A  V  +  +  N +  EL+  +ID +  ++    Q  I  W 
Sbjct: 24  QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWF 83

Query: 73  LKRGE-------------------RADIERFISLSCYRGIRHQDGLPLRGQRTHTNAR 109
           L R +                   R D+ER   +  +RG+RH  GL +RGQ T T  R
Sbjct: 84  LNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 141

[Close]

BLAST of Cmc00g0001301.1 vs. TAIR 10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 34/118 (28.81%), Postives = 52/118 (44.07%), Query Frame = 0


Query: 13  KQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIG---QDHIVHWE 72
           +++  A T I GIG + A  V  +  +  N +  EL+  +ID +  ++    Q  I  W 
Sbjct: 24  QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWF 83

Query: 73  LKRGE-------------------RADIERFISLSCYRGIRHQDGLPLRGQRTHTNAR 109
           L R +                   R D+ER   +  +RG+RH  GL +RGQ T T  R
Sbjct: 84  LNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 141

[Close]

BLAST of Cmc00g0001301.1 vs. TAIR 10
Match: AT4G09800.1 (S18 ribosomal protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 34/118 (28.81%), Postives = 52/118 (44.07%), Query Frame = 0


Query: 13  KQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIG---QDHIVHWE 72
           +++  A T I GIG + A  V  +  +  N +  EL+  +ID +  ++    Q  I  W 
Sbjct: 24  QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWF 83

Query: 73  LKRGE-------------------RADIERFISLSCYRGIRHQDGLPLRGQRTHTNAR 109
           L R +                   R D+ER   +  +RG+RH  GL +RGQ T T  R
Sbjct: 84  LNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 141

The following BLAST results are available for this feature:

BLAST of Cmc00g0001301.1 vs. NCBI nr


Match Name	E-value	Identity	Description
AEN56112.1	9.8e-58	100.00	ribosomal protein S13 [Cucumis melo subsp. melo] >AZP40311.1 ribosomal protein S...	[more]
YP_009913633.1	4.9e-57	98.28	ribosomal protein S13 [Luffa acutangula] >QLJ93026.1 ribosomal protein S13 [Luff...	[more]
XP_038887163.1	1.8e-56	97.41	ribosomal protein S13, mitochondrial [Benincasa hispida]	[more]
YP_009565407.1	7.8e-55	93.97	ribosomal protein S13 [Morus notabilis] >QBB08764.1 ribosomal protein S13 [Morus...	[more]
YP_003587259.1	1.0e-54	95.69	ribosomal protein S13 [Citrullus lanatus] >ACV96649.1 ribosomal protein S13 [Cit...	[more]

BLAST of Cmc00g0001301.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P05488	2.8e-55	91.38	Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPS13 PE=3 ...	[more]
P23209	1.4e-54	90.52	Ribosomal protein S13, mitochondrial OS=Daucus carota OX=4039 GN=RPS13 PE=3 SV=1	[more]
P08977	4.9e-52	87.07	Ribosomal protein S13, mitochondrial OS=Zea mays OX=4577 GN=RPS13 PE=3 SV=2	[more]
P07924	8.3e-52	86.21	Ribosomal protein S13, mitochondrial OS=Triticum aestivum OX=4565 GN=RPS13 PE=3 ...	[more]
P15758	1.4e-51	88.79	Ribosomal protein S13, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS13 PE...	[more]

BLAST of Cmc00g0001301.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G3EU28	4.7e-58	100.00	Ribosomal protein S13 OS=Cucumis melo subsp. melo OX=412675 GN=rps13 PE=3 SV=1	[more]
A0A3S9JII2	4.7e-58	100.00	Ribosomal protein S13 OS=Cucumis melo var. momordica OX=2034244 GN=rps13 PE=3 SV...	[more]
A0A7D6C5F5	2.4e-57	98.28	Ribosomal protein S13 OS=Luffa acutangula OX=56866 GN=rps13 PE=3 SV=1	[more]
A0A411GS20	3.8e-55	93.97	Ribosomal protein S13 OS=Morus notabilis OX=981085 GN=rps13 PE=3 SV=1	[more]
D5I3C9	4.9e-55	95.69	Ribosomal protein S13 OS=Citrullus lanatus OX=3654 GN=rps13 PE=3 SV=1	[more]

BLAST of Cmc00g0001301.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77750.1	2.1e-13	37.74	Ribosomal protein S13/S18 family	[more]
AT5G14320.1	1.1e-09	30.56	Ribosomal protein S13/S18 family	[more]
AT1G22780.1	1.3e-04	28.81	Ribosomal protein S13/S18 family	[more]
AT1G34030.1	1.3e-04	28.81	Ribosomal protein S13/S18 family	[more]
AT4G09800.1	1.3e-04	28.81	S18 ribosomal protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 6..109 e-value: 1.6E-28 score: 99.7
IPR001892	Ribosomal protein S13	PIRSF	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 1..116 e-value: 2.8E-37 score: 125.6
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 1..116 score: 20.933716
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 4..112 score: 36.73769
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 72..111 e-value: 3.7E-20 score: 73.1
None	No IPR available	GENE3D	1.10.8.50		coord: 1..71 e-value: 5.7E-16 score: 60.5
None	No IPR available	PANTHER	PTHR10871:SF38	RIBOSOMAL PROTEIN S13	coord: 1..116
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..116
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 88..101
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 3..112

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc00g0001301	Cmc00g0001301	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001301.1-exon	Cmc00g0001301.1-exon-CMiso1.1chr00:1371622..1371972	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001301.1-cds	Cmc00g0001301.1-cds-CMiso1.1chr00:1371622..1371972	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001301.1	Cmc00g0001301.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome