CmaCh20G006670.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G006670.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 3065004 .. 3066524 (-)
Sequence length531
RNA-Seq ExpressionCmaCh20G006670.1
SyntenyCmaCh20G006670.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACTACAAGTATATGGTTCTCTTTTACCTGCTACATCTCAGTTTCGGCCATTTCTGTAATTGATTTCTAATCACTGGATTTCTAGTTCAATGAATTGGTATCTATGCAATGAAATCTTCTAATATCAACTTGGGTTGGAGTTTTAGTTTCCCTTATAGCCATTCCTGGAAATAATCTATTTTGACAAGGACAATGAACGAACTTGGTGCATCTTCCAGAAGAGAAATATGTTAGTATTTAATATTGGACGAATGAGGTTACAAACCCTTTTTCCACAAACAAGAAAAAGGGGTTTCATTTCAGCATGTAGCTAGCGACAGCTGTTTGATGGAAACATATGGAAATACACAGGCGAAAGCAAAGCAGTTTGTCTAAAAAATTAAGATAAGTTGCAGATTTTAGATGAGTGAAGGAAGTGCCTCTAGATTAGAGCCTGTTCTCAGAGCACGAGATCCCAGAATATTCTTGGAAGATTGTATGACTTCTTGTCCATTGGCATAGTGATGGCGGCACACCGGCATATAGACATCAGCCCCAGCGATAAGCTCGGTCCTTGTCTCCTCTGTCTTTCTCAAGGTAAAGAAGGCTCTTTTACCACAAAGTTCACATCTAGCTGTCAACTTAGTTACTGTGTCAGCCAGAGGTACTACATCAAGCACTGAACCAAATCTCCTCCTGCCAAAACCATGGAAGAATAACCACTTTAGTATTAGAAAGATCCCTGATTTCGCATCTGGGTGGCACAATTTTCAAGTTACCCAACAGCTCAGATGCAAGAAATTATGTTAATGCAGAATTGTCATATGTACAGAGAAAGACAGAGAGAGATTTGAATGGGACCTGAGGTAATCTCCATCTAAGCCAGCAACGATAATGATTTTGCCATCTTTATCAGCAACATCGCAGCAAAAATCATAGAGATCATCGAAAAATTGAGCTTCATCAACACCAATCACATCCAGCTGCCGGTATTATTGGGGGTTTAGATAAATAAGATTTGCCAAACAAATAGTAATGAAAAAGAATGATTCTTCAAAGAAGATACCTTGTTATAAGCATCTTCTCCAAATTTCTGTCGGAAAGACGAAAGATCTGGCAGTGCCCAGCATGGAAATTTGGCCCCATCGTGTGTTACTACCGAATCGACAGCGTACCTTGTGTCCTTGCTTGACTTGATCATCACCACATTCCTGCAGAGCAGATACGAGAGTTCATGGAATTCCAAGTTGAGATTTTACTCAAGGTTTTCGATCTGTTTGCAGGCCGTAAGAATAGACTTTATGTTTACCTGCCACTGCTGCTCTCAGCTTTGATCCGACGGAGTAGAGCGGTGGTTTTTCCGGCAAACATAGGACCGATGATCACATGGACTTCGCCTGCGACGCGGTGTGGAGATCCTGCACTGACGGCACCACCATCGGTGGAAAATGAATTCCTCAAGGACTCCATGGAGCAGATTGGAGACGAAAAAGCAAATAGGACAGAATTTGAATCGAAATCGGAGGCGCAATTTTGA

mRNA sequence

ATGAAAACTACAATGATGGCGGCACACCGGCATATAGACATCAGCCCCAGCGATAAGCTCGGTCCTTGTCTCCTCTGTCTTTCTCAAGCCAGAGGTACTACATCAAGCACTGAACCAAATCTCCTCCTGCCAAAACCATGGAAGAATAACCACTTTAGTATTAGAAAGATCCCTGATTTCGCATCTGGGTGGCACAATTTTCAACAACATCGCAGCAAAAATCATAGAGATCATCGAAAAATTGAGCTTCATCAACACCAATCACATCCAGCTGCCGGCCGTAAGAATAGACTTTATGTTTACCTGCCACTGCTGCTCTCAGCTTTGATCCGACGGAGTAGAGCGGTGGTTTTTCCGGCAAACATAGGACCGATGATCACATGGACTTCGCCTGCGACGCGGTGTGGAGATCCTGCACTGACGGCACCACCATCGGTGGAAAATGAATTCCTCAAGGACTCCATGGAGCAGATTGGAGACGAAAAAGCAAATAGGACAGAATTTGAATCGAAATCGGAGGCGCAATTTTGA

Coding sequence (CDS)

ATGAAAACTACAATGATGGCGGCACACCGGCATATAGACATCAGCCCCAGCGATAAGCTCGGTCCTTGTCTCCTCTGTCTTTCTCAAGCCAGAGGTACTACATCAAGCACTGAACCAAATCTCCTCCTGCCAAAACCATGGAAGAATAACCACTTTAGTATTAGAAAGATCCCTGATTTCGCATCTGGGTGGCACAATTTTCAACAACATCGCAGCAAAAATCATAGAGATCATCGAAAAATTGAGCTTCATCAACACCAATCACATCCAGCTGCCGGCCGTAAGAATAGACTTTATGTTTACCTGCCACTGCTGCTCTCAGCTTTGATCCGACGGAGTAGAGCGGTGGTTTTTCCGGCAAACATAGGACCGATGATCACATGGACTTCGCCTGCGACGCGGTGTGGAGATCCTGCACTGACGGCACCACCATCGGTGGAAAATGAATTCCTCAAGGACTCCATGGAGCAGATTGGAGACGAAAAAGCAAATAGGACAGAATTTGAATCGAAATCGGAGGCGCAATTTTGA

Protein sequence

MKTTMMAAHRHIDISPSDKLGPCLLCLSQARGTTSSTEPNLLLPKPWKNNHFSIRKIPDFASGWHNFQQHRSKNHRDHRKIELHQHQSHPAAGRKNRLYVYLPLLLSALIRRSRAVVFPANIGPMITWTSPATRCGDPALTAPPSVENEFLKDSMEQIGDEKANRTEFESKSEAQF
Homology
The following BLAST results are available for this feature:
BLAST of CmaCh20G006670.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G006670.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G006670.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G006670.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh20G006670CmaCh20G006670gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G006670.1:exon:1587CmaCh20G006670.1:exon:1587exon
CmaCh20G006670.1:exon:1586CmaCh20G006670.1:exon:1586exon
CmaCh20G006670.1:exon:1585CmaCh20G006670.1:exon:1585exon
CmaCh20G006670.1:exon:1584CmaCh20G006670.1:exon:1584exon
CmaCh20G006670.1:exon:1583CmaCh20G006670.1:exon:1583exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G006670.1:cdsCmaCh20G006670.1:cds_5CDS
CmaCh20G006670.1:cdsCmaCh20G006670.1:cds_4CDS
CmaCh20G006670.1:cdsCmaCh20G006670.1:cds_3CDS
CmaCh20G006670.1:cdsCmaCh20G006670.1:cds_2CDS
CmaCh20G006670.1:cdsCmaCh20G006670.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh20G006670.1CmaCh20G006670.1-proteinpolypeptide