CmaCh19G006740.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G006740.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein RADIALIS-like 1
Location	Cma_Chr19: 7033206 .. 7035209 (+)
Sequence length	273
RNA-Seq Expression	CmaCh19G006740.1
Synteny	CmaCh19G006740.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCTTCCCATGGATCAGCTAGTACATGGACTGTAAAGCAAAACAAGGTCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTGAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGGCATTATGCACTTCTTGTCGACGATGTTAAGTTCATTGAGTCGGGTCAAGTTCCCTTTCCCTATCAAACCTCTGGAGGAGGTACCCAAGGTAAAATAAGTTTTTGGATTGATCGGTGATTTTACCTGATATTCGAATATGAAATTTTATGTATCATTTTTTCGAGGTGATCCAAACAACCCGAATACAATTTCCAACTCAAACTTCTGGGTTGGGTTGAGTTGTCGGATTGTTCTTTTATTATAAACTGATACATGTAATATTAATAACTAAAATCTCAAAGTTTAAATATCAAATATTTAGAAGTCAGCTCACATCACTAACATCAGTTACAAATATTAAATGTTCCAAACCTTTTTTGTGAGATCCCAACATTGGATGGGTAGGAAAACAAATCATTATTTATAAGAGTATGGAAATCACTCCCTAGCCGATGTTTTGAAAACCTTGAGGGGAAGCCCGAAAAAGAAAGTCAAAGGAGAACAATATGTGTTAGCGGTAGATTTACGGTGGTCTAGGATGTTACACTTCTAAATGCAGGGTGTGGTTGGGTTGGATTGTAACCTTTTTATTGAGTTGGTCGAGTTGATGTAGACAAAAAAAAAAAAAAAAATCAACCTACAAACCAAACCAAATTTTTCGGTTTTTTAATTATTCATGTTTGATTTTAACCCAATGTTTTTTTTTTCTCAGGATGAGAAACATGAAGCTCCACCATTGTGATGGTGAAGTGAGGGAGAATAAAAGAAGGAAAGAAGAATGAACCTTTTTGTCTAATATGATACCTAATATTATTGATTGGCGTCAAGCTCTATCTTAATTGTTATCAACCATCGATTTTGGGAGGGCAAGATCAAAAGGATTATCCCTTCCTTTTTCGTTAGTATAATGAATATTTATGTCCTTTTATAATGAAATTTATAAGCAATATGGTGTACCTTTTTACCTTCTCAACAATGAAAGTGCTAATTTATGTTTCTTCGTACGACGCAAAGGAAGAGTACGGGTATATAAATGAAAAAAAACCACATTTAAATGAGTGATTCTATACCAACAAGCACTGAGACTCAGACACGACCTAAACTCCTATAAGAGGCAGTAGTGGAGAATTTTCTGCAATGGACGAAACTCTAATGGAGCAATATCGCGTGGAGGTAGAAGATTTACGAGTCGTGAACTTTTTTCAGAGAAGAAGCAATAACAATATCTGGAAAATAAAACTCGGCTAACTCTATGTCAAGAGCCGCAATAATATAGAGACAAATGCCATTAAACAAATAATAGACGTTCAACCGTTTTCGTGGATGTGCACGAAGAAGATTGAAACTTGCTCTAAAGCCAAATAATTTTACAAAACTAAGGGAATATTGGAATTCATAGCAAATTTGTAAAAATAAAATAAATTATAATTAAAAAAAAACATTTTTTCCCCTAAATTTTCTTAGATTTTAAAAATCTAAAAGGTAACAAAACAAAAATCAAGATTATTTGGTTTTTTTATTTTTTATTTTCTTTTTAATTAAGCCTACGAACATCACTTTCACCTATTAATTTATGTGTTTTAATGTCAACATTTTATTTGTTTTTGGTAAGGGGAGGATGTGCTAGTCCATAGTCAGGCTGATGGTACGAATCCGAGCTCACCTAGTGGGTTCATATGCACACATGTGAGCTAGAGAATACTATTCATCAAATCCTAATAAAAAAAAAGTCTTACGTGTCAAGAATTATGTTATATGTGGTTACATTTTTCGATCCCAACAATACCATCACTTACTGAATATTTTTAAAATATTCCTTCAATGTCTATCATTTATTTAGATGAACACAAAGGTCACACTAGATAG

mRNA sequence

ATGGCTTCAATGTCTTCCCATGGATCAGCTAGTACATGGACTGTAAAGCAAAACAAGGTCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTGAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGGCATTATGCACTTCTTGTCGACGATGTTAAGTTCATTGAGTCGGGTCAAGTTCCCTTTCCCTATCAAACCTCTGGAGGAGGTACCCAAGATGAACACAAAGGTCACACTAGATAG

Coding sequence (CDS)

ATGGCTTCAATGTCTTCCCATGGATCAGCTAGTACATGGACTGTAAAGCAAAACAAGGTCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTGAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGGCATTATGCACTTCTTGTCGACGATGTTAAGTTCATTGAGTCGGGTCAAGTTCCCTTTCCCTATCAAACCTCTGGAGGAGGTACCCAAGATGAACACAAAGGTCACACTAGATAG

Protein sequence

MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDVKFIESGQVPFPYQTSGGGTQDEHKGHTR

Homology

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-24
Identity = 50/83 (60.24%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 5  SSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDVKF 64
          S+ GS   W+ K+NK FE+ALAVYD+DTPDRW NVA+AV G+T EEV++HY +LV+D+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YQTSGGGTQDEHK 87
          IESG+VPFP Y+T+GG  + + K
Sbjct: 63 IESGKVPFPNYRTTGGNMKTDEK 85

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-24
Identity = 57/81 (70.37%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 2  ASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDD 61
          +SMSS  S S WT KQNK FEQALA YDQDTP+RW NVAK V GKT EEV+RHY LLV D
Sbjct: 4  SSMSSQSSGS-WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKFIESGQVPFP-YQTSGGGT 82
          +  IE+G VPFP Y+TSGG T
Sbjct: 64 INSIENGHVPFPNYRTSGGCT 83

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-23
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 3  SMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDV 62
          SMSS+GS S WTVKQNK FE+ALAVYDQDTPDRW NVA+AV GKT EE +R Y LLV D+
Sbjct: 5  SMSSYGSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KFIESGQVPFP-YQTSGGGT-----QDEHK 87
          + IE+G VPFP Y+T+ G +     +DE K
Sbjct: 65 ESIENGHVPFPDYKTTTGNSNRGRLRDEEK 93

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-20
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS S   SAS WT K+NK+FE+ALA YDQDTPDRW NVA+AV GK+AEEV RHY LL+ 
Sbjct: 1  MASNSMSSSAS-WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIR 60

Query: 61 DVKFIESGQVPFPYQTSGG 80
          DV  IESG+ P P   S G
Sbjct: 61 DVNDIESGRYPHPNYRSNG 78

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.9e-20
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS +S  S S WT  QNK+FE+ALAVYD+DTPDRW NVAKAV GKT EEV+RHY +LV+
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKFIESGQVPFP-YQTSGGGTQDEHKGHTR 91
          D+  IE+G+VP P Y+T    ++  +   TR
Sbjct: 61 DLINIETGRVPLPNYKTFESNSRSINDFDTR 90

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy TrEMBL
Match: A0A6J1I508 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471062 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.0e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD
Sbjct: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPYQTSGGGTQ
Sbjct: 61 DVKFIESGQVPFPYQTSGGGTQ 82

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy TrEMBL
Match: A0A6J1GJE9 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGSA TWTVKQNK FEQALAVYDQDTPDRWLNVAKAVPGKT EEVERHYALLV+
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+TSGGGTQ
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQ 82

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy TrEMBL
Match: A0A0A0K348 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.5e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGS  TWTV QNK FE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLV+
Sbjct: 1  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+TSGGG Q
Sbjct: 61 DVKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy TrEMBL
Match: A0A5A7SYK4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1323G00110 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.9e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGS  TWTVKQNK FE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLV+
Sbjct: 1  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+TSG G Q
Sbjct: 61 DVKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of CmaCh19G006740.1 vs. ExPASy TrEMBL
Match: A0A1S3BFW6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.9e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGS  TWTVKQNK FE+ALAVYDQDTPDRWLNVAKAV GKTAEEV+RHYALLV+
Sbjct: 1  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+TSG G Q
Sbjct: 61 DVKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of CmaCh19G006740.1 vs. NCBI nr
Match: XP_022972517.1 (protein RADIALIS-like 1 [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD
Sbjct: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPYQTSGGGTQ
Sbjct: 61 DVKFIESGQVPFPYQTSGGGTQ 82

[Close]

BLAST of CmaCh19G006740.1 vs. NCBI nr
Match: KAG7011712.1 (Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGSA TWTVKQNK FEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLV+
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+TSGGGT+
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTR 82

[Close]

BLAST of CmaCh19G006740.1 vs. NCBI nr
Match: XP_022952072.1 (protein RADIALIS-like 1 [Cucurbita moschata])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGSA TWTVKQNK FEQALAVYDQDTPDRWLNVAKAVPGKT EEVERHYALLV+
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+TSGGGTQ
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQ 82

[Close]

BLAST of CmaCh19G006740.1 vs. NCBI nr
Match: XP_023511620.1 (3-ketoacyl-CoA synthase 17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.6 bits (405), Expect = 6.3e-36
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGSA TWTVKQNK FEQALAVYDQDTPD+WLNVAKAVPGKTAEEVE HYALLV+
Sbjct: 1  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQD 84
          DVKFIESGQVPFPY+TSGGGTQ+
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQE 83

[Close]

BLAST of CmaCh19G006740.1 vs. NCBI nr
Match: KAG6572045.1 (Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MASMSSHGSA TWTVKQNK FEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLV+
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYQTSGGGTQ 83
          DVKFIESGQVPFPY+ SGGGT+
Sbjct: 61 DVKFIESGQVPFPYRISGGGTR 82

[Close]

BLAST of CmaCh19G006740.1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-25
Identity = 57/81 (70.37%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 2  ASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDD 61
          +SMSS  S S WT KQNK FEQALA YDQDTP+RW NVAK V GKT EEV+RHY LLV D
Sbjct: 4  SSMSSQSSGS-WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKFIESGQVPFP-YQTSGGGT 82
          +  IE+G VPFP Y+TSGG T
Sbjct: 64 INSIENGHVPFPNYRTSGGCT 83

[Close]

BLAST of CmaCh19G006740.1 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-24
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 3  SMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVDDV 62
          SMSS+GS S WTVKQNK FE+ALAVYDQDTPDRW NVA+AV GKT EE +R Y LLV D+
Sbjct: 5  SMSSYGSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KFIESGQVPFP-YQTSGGGT-----QDEHK 87
          + IE+G VPFP Y+T+ G +     +DE K
Sbjct: 65 ESIENGHVPFPDYKTTTGNSNRGRLRDEEK 93

[Close]

BLAST of CmaCh19G006740.1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-21
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS +S  S S WT  QNK+FE+ALAVYD+DTPDRW NVAKAV GKT EEV+RHY +LV+
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKFIESGQVPFP-YQTSGGGTQDEHKGHTR 91
          D+  IE+G+VP P Y+T    ++  +   TR
Sbjct: 61 DLINIETGRVPLPNYKTFESNSRSINDFDTR 90

[Close]

BLAST of CmaCh19G006740.1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-21
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS +S  S S WT  QNK+FE+ALAVYD+DTPDRW NVAKAV GKT EEV+RHY +LV+
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKFIESGQVPFP-YQTSGGGTQDEHKGHTR 91
          D+  IE+G+VP P Y+T    ++  +   TR
Sbjct: 61 DLINIETGRVPLPNYKTFESNSRSINDFDTR 90

[Close]

BLAST of CmaCh19G006740.1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 98.2 bits (243), Expect = 3.6e-21
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 1  MASMSSHGSASTWTVKQNKVFEQALAVYDQDTPDRWLNVAKAVPGKTAEEVERHYALLVD 60
          MAS SS  S+S+WT KQNK+FE+ALAVYD+DTPDRW NVAKAV  K+AEEV+RHY +LV+
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKFIESGQVPFP-YQTSGGGTQ 83
          D+  IE   VP P Y+T   G++
Sbjct: 61 DLMNIEQDLVPLPKYKTVDVGSK 82

The following BLAST results are available for this feature:

BLAST of CmaCh19G006740.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q58FS3	1.1e-24	60.24	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
F4JVB8	3.3e-24	70.37	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	4.8e-23	64.44	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	1.0e-20	65.82	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	2.9e-20	58.24	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of CmaCh19G006740.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I508	5.0e-39	100.00	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471062 PE=4 SV=1	[more]
A0A6J1GJE9	1.0e-36	93.90	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1	[more]
A0A0A0K348	4.5e-32	87.80	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 S...	[more]
A0A5A7SYK4	5.9e-32	87.80	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFW6	5.9e-32	87.80	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]

BLAST of CmaCh19G006740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972517.1	1.0e-38	100.00	protein RADIALIS-like 1 [Cucurbita maxima]	[more]
KAG7011712.1	2.1e-36	93.90	Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022952072.1	2.1e-36	93.90	protein RADIALIS-like 1 [Cucurbita moschata]	[more]
XP_023511620.1	6.3e-36	91.57	3-ketoacyl-CoA synthase 17-like [Cucurbita pepo subsp. pepo]	[more]
KAG6572045.1	1.1e-35	92.68	Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh19G006740.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.4e-25	70.37	RAD-like 1	[more]
AT2G21650.1	3.4e-24	64.44	Homeodomain-like superfamily protein	[more]
AT1G75250.1	2.1e-21	58.24	RAD-like 6	[more]
AT1G75250.2	2.1e-21	58.24	RAD-like 6	[more]
AT1G19510.1	3.6e-21	62.65	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 e-value: 7.9E-5 score: 32.0
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..55 e-value: 6.23972E-6 score: 37.9402
None	No IPR available	GENE3D	1.10.10.60		coord: 4..72 e-value: 1.8E-22 score: 80.8
None	No IPR available	PANTHER	PTHR43952:SF73	PROTEIN RADIALIS-LIKE 1	coord: 1..82
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..82
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh19G006740	CmaCh19G006740	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh19G006740.1:exon:459	CmaCh19G006740.1:exon:459	exon
CmaCh19G006740.1:exon:458	CmaCh19G006740.1:exon:458	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh19G006740.1:cds	CmaCh19G006740.1:cds	CDS
CmaCh19G006740.1:cds	CmaCh19G006740.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh19G006740.1	CmaCh19G006740.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity