CmaCh19G005950.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G005950.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr19: 6565391 .. 6565821 (+)
Sequence length279
RNA-Seq ExpressionCmaCh19G005950.1
SyntenyCmaCh19G005950.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGGTGGCGATGAGCTTGAAAATGAAGACGCCGATTTAGGGTTTTTACGGAAAGGGACCGGAGGTATATAATGCGCAGAAGCATCGAAATCTATTTTCCATTCTTCAGTGCAGTTTCAGCTGCCCTCCAAATCGGAACCCTCTGATACCAATCTCGGTCTTGTTCTTCGCCGTCGGATCGCGGACTCCGACCATCTATCCCTTCTTTAACCTTCCCTCTCCTCCACTATCATTTCGCCTTCGCAACAAACCCCAAAAACAAACTCTTCTTGTTGTTGTTGTTGTTAGGTATTTTACCCCCACGAAAATTCTTACAAAAACATTGTTCTTCTTCTTACAAAATCAATTTCTTTTCCTTGTCCTGTAGGATTATCCACCTCCGTTCTTGCATTTTTTCCTTTAATATTGGTGTTACTGCTCGATTCTGA

mRNA sequence

ATGTACGGTGGCGATGAGCTTGAAAATGAAGACGCCGATTTAGGTTTCAGCTGCCCTCCAAATCGGAACCCTCTGATACCAATCTCGGTCTTGTTCTTCGCCGTCGGATCGCGGACTCCGACCATCTATCCCTTCTTTAACCTTCCCTCTCCTCCACTATCATTTCGCCTTCGCAACAAACCCCAAAAACAAACTCTTCTTGTTGTTGTTGTTGTTAGGATTATCCACCTCCGTTCTTGCATTTTTTCCTTTAATATTGGTGTTACTGCTCGATTCTGA

Coding sequence (CDS)

ATGTACGGTGGCGATGAGCTTGAAAATGAAGACGCCGATTTAGGTTTCAGCTGCCCTCCAAATCGGAACCCTCTGATACCAATCTCGGTCTTGTTCTTCGCCGTCGGATCGCGGACTCCGACCATCTATCCCTTCTTTAACCTTCCCTCTCCTCCACTATCATTTCGCCTTCGCAACAAACCCCAAAAACAAACTCTTCTTGTTGTTGTTGTTGTTAGGATTATCCACCTCCGTTCTTGCATTTTTTCCTTTAATATTGGTGTTACTGCTCGATTCTGA

Protein sequence

MYGGDELENEDADLGFSCPPNRNPLIPISVLFFAVGSRTPTIYPFFNLPSPPLSFRLRNKPQKQTLLVVVVVRIIHLRSCIFSFNIGVTARF
Homology
[Close]
BLAST of CmaCh19G005950.1 vs. NCBI nr
Match: KAG6571966.1 (hypothetical protein SDJN03_28694, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.2 bits (365), Expect = 2.8e-31
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MYGGDELENEDADLGFSCPPNRNPLIPISVLFFAVGSRTPTIYPFFNLPSPPLSFRLRNK 60
          MYGGDELENEDADLGFSCPPNRNPLIPISVLF AVGSRTPTIYPFF+LPSPPLSFRLRNK
Sbjct: 1  MYGGDELENEDADLGFSCPPNRNPLIPISVLFSAVGSRTPTIYPFFSLPSPPLSFRLRNK 60

Query: 61 PQKQTLLVVVVVRII 76
          PQKQTL+VV+VV ++
Sbjct: 61 PQKQTLVVVIVVVVV 75

[Close]
BLAST of CmaCh19G005950.1 vs. NCBI nr
Match: KAG7011646.1 (hypothetical protein SDJN02_26552, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 67/96 (69.79%), Postives = 73/96 (76.04%), Query Frame = 0 

Query: 1  MYGGDELENEDADLG---------------------FSCPPNRNPLIPISVLFFAVGSRT 60
          MYGGDELENEDADLG                     FSCPPNRNPLIPISVLF AVGSRT
Sbjct: 1  MYGGDELENEDADLGQEPEVYKAQKQRNPFSILQCSFSCPPNRNPLIPISVLFSAVGSRT 60

Query: 61 PTIYPFFNLPSPPLSFRLRNKPQKQTLLVVVVVRII 76
          PT+YPFF+LPSPPLSFRLRNKPQKQTL+VV+VV ++
Sbjct: 61 PTVYPFFSLPSPPLSFRLRNKPQKQTLVVVIVVVVV 96

The following BLAST results are available for this feature:
BLAST of CmaCh19G005950.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G005950.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G005950.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571966.12.8e-3190.67hypothetical protein SDJN03_28694, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011646.11.9e-2769.79hypothetical protein SDJN02_26552, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh19G005950.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh19G005950CmaCh19G005950gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh19G005950.1:exon:641CmaCh19G005950.1:exon:641exon
CmaCh19G005950.1:exon:642CmaCh19G005950.1:exon:642exon
CmaCh19G005950.1:exon:643CmaCh19G005950.1:exon:643exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh19G005950.1:cdsCmaCh19G005950.1:cdsCDS
CmaCh19G005950.1:cdsCmaCh19G005950.1:cds_2CDS
CmaCh19G005950.1:cdsCmaCh19G005950.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh19G005950.1CmaCh19G005950.1-proteinpolypeptide