CmaCh18G012200.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G012200.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptiontraB domain-containing protein isoform X2
LocationCma_Chr18: 9621064 .. 9623465 (+)
Sequence length894
RNA-Seq ExpressionCmaCh18G012200.1
SyntenyCmaCh18G012200.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATACGTTAGAAACTGGTGAGCCACACCAAAAACTAAAGTCCAACATGTTCTCCTTGAGTGGAGATGGTTTCTTGGGTGCTGTTGGTCGCAGCATAAACCTAGGTGAGGCTAACATTTTGTTTGTTTTTTTTTTGTTGGTTTTTGGCATATAAGCTGTCTAAAACTTGTCAATAATTCTTCAGGAGGCCAGACAGCTCTTGCTTTGCGCCTGCTTTTAGCTGCTTTTTCCTCCAAAATTTCTTCAGATGTCAACCGTCCTTTTGGCAGTGAGGTAACAGATCTTCAATTAACCAAGTAATGTTTAGACTAAGTTCATGTTCATGAAACTCTAATCAATCATGCAGTTTCGGGCTGCTCGTAAAGCATCTGAAGAAGTTGGTGCTCAAATAGTTTTAGGGGATCGGCCAATTGAAATAACTGTATGTGTTTCATTCCTGCAAGATGACACAATTTCTTGCTTTTCCAACTGCCACAAACCAGTAATGTTTTGCCCTCTCACTCGCTTCAATTTGATCTGTTGATTGTGCAGCTAGAAAGGGCATGGAACGCTTTGACATGGAACGAGAAGTTGAGCTTAGTAAGCTCAGTTATCCGTGGAATAACTTCACAATCTAATGTTTCTCAGAGCAATGATGAGGTTCTTTCCCACTTGAAATCTTTTACTCCACTTCTCAGCTTTAAATGATACATATTTTAGAAGTGATTCAGCCTTAATATATGGTTGCAAGATGGGAAGAAAACTTCTGTTCATAACTATGGCTTCCTAAGTTTTGAATAGTAGACCGGTTGAGCTAGGAACTGGAGTCGGATGCAAAAGAAATGCATAGACTGGCTTACATACCATATCAGGAACATCCGACATAGATTTAAACATGTCTTTCTAAGGAGTTGAATCTATGCTTTAAACATAGAGATCTGTATAATTAGGCAATTCCTGTTACTATTTTCTTTTTTCTCATTTGGTCGTTTTCACCGATGTTCTTGTTTCTTCTGTATGATCGCTTCTTTTACTTAGGATCTTGTTTATTAATGTGAGATCTCACATCGATTAGAGAGAGGAACAAGTGTTAGCGAAGACGCTGGACCCTGAAGGGGGTGGATTGTGAGATCCCACGTCGATTGGAGAGAGAAGTGAGTGTCAGCGAGAACGCTGGGCCCCGAAGGGGGTGGATCGTGAGATTTCACATCAGTTGGAGAGGGGAACGAAGCATTCTTTACAAGGGTGTTGAAATCTCTCCCCTCCCTAACGCGTTTTAAAAGCCTTGAGGAGAAACCCGAAAGGGAAAACCCAAAGATGACGATATCTATTAGCTGTGTGCTTGAGTTGTTACAAATGGTATCAGAGTCAGACACCGGGCGATGTGCCAACGAGGACGCTGGTTCTCGAAGAGGGGTGAATTGTGAGATCCCACATCGATTGGAGAGAGGAATGAAACATTCTTTATAAGACTGTTGAAACTTCTCCCTAGCAAACCGGTTTTAGAAACCTTGAGGGGAAAGTCTAAAGAGGACAATATCTATTAGCATTGGGCTTGGGCTGTTATAAATGGTATCAGAGCCGGACACCAGGCGGTATGCTAAGCGAGGACATTGAGCCCTGAAGGGAGGTGGATTGTGAGATCCCACATCGATTGGATAGGGAAATGAAGTATTCTTTATAAGGGTGTTGAAACCTCTCTCTAGCAGACACATGAACCATTACAATTAACATCACAAAAACTATAAGCATACATCCTTCTTTTTCTTGAAGTTCGAATCTAGGTGCATGAATCATCATATCCTTCGTTTTGTGAATGTGCTTTTCAGGAAGCAGGTAGAGATGGGAGTTCCTTGCAGCTGTATGAGCAGCTCAGTTTTTCATATCCATCTCTTCTTCAACCTCTTATTCATGAACGAGACACTGTAAGTATAATCACATAATGCATTTGGCAGCTCTTACTTCTTACCTCTGTAAAGTTGTTAATAGCTGCATTTTCAGTACATTGCATGGTCTCTAAAGCGAAGCAAGGCGGTGAACAAGAGTAAAAGGGTGGTGGGGGTGATTGGAAGAGGCCATATGAACGGCGTCATCTATGCCATCATATCAGATCAAGGAAACTTGCGATTTCGAGACGTTGCAGGTAAGAGAGCTGGGGAAACCTCCAATGGCTTTGTTAGCAGTCTGTTGCAGAGCTTGGTTAGAGACACTATCATTGGTGTTCTCTTCTGGGTTTTATATGAACAATTGAAACAACTACATTTAGTGCCTTAGCTGATCATCTTTCCAAACCATACCTTTGTAGAAAATCAATCCAAAAGTATACCATTCAAAACTTACATGTAAAGAGATGATTTGATCCTTATGTGTATTAGTCCATTTTTCAATATATCATTTGAAAATTGATCTAAATCCATCCCC

mRNA sequence

ATGTATACGTTAGAAACTGGTGAGCCACACCAAAAACTAAAGTCCAACATGTTCTCCTTGAGTGGAGATGGTTTCTTGGGTGCTGTTGGTCGCAGCATAAACCTAGGAGGCCAGACAGCTCTTGCTTTGCGCCTGCTTTTAGCTGCTTTTTCCTCCAAAATTTCTTCAGATGTCAACCGTCCTTTTGGCAGTGAGTTTCGGGCTGCTCGTAAAGCATCTGAAGAAGTTGGTGCTCAAATAGTTTTAGGGGATCGGCCAATTGAAATAACTCTAGAAAGGGCATGGAACGCTTTGACATGGAACGAGAAGTTGAGCTTAGTAAGCTCAGTTATCCGTGGAATAACTTCACAATCTAATGTTTCTCAGAGCAATGATGAGGAAGCAGGTAGAGATGGGAGTTCCTTGCAGCTGTATGAGCAGCTCAGTTTTTCATATCCATCTCTTCTTCAACCTCTTATTCATGAACGAGACACTTACATTGCATGGTCTCTAAAGCGAAGCAAGGCGGTGAACAAGAGTAAAAGGGTGGTGGGGGTGATTGGAAGAGGCCATATGAACGGCGTCATCTATGCCATCATATCAGATCAAGGAAACTTGCGATTTCGAGACGTTGCAGGTAAGAGAGCTGGGGAAACCTCCAATGGCTTTGTTAGCAGTCTGTTGCAGAGCTTGGTTAGAGACACTATCATTGGTGTTCTCTTCTGGGTTTTATATGAACAATTGAAACAACTACATTTAGTGCCTTAGCTGATCATCTTTCCAAACCATACCTTTGTAGAAAATCAATCCAAAAGTATACCATTCAAAACTTACATGTAAAGAGATGATTTGATCCTTATGTGTATTAGTCCATTTTTCAATATATCATTTGAAAATTGATCTAAATCCATCCCC

Coding sequence (CDS)

ATGTATACGTTAGAAACTGGTGAGCCACACCAAAAACTAAAGTCCAACATGTTCTCCTTGAGTGGAGATGGTTTCTTGGGTGCTGTTGGTCGCAGCATAAACCTAGGAGGCCAGACAGCTCTTGCTTTGCGCCTGCTTTTAGCTGCTTTTTCCTCCAAAATTTCTTCAGATGTCAACCGTCCTTTTGGCAGTGAGTTTCGGGCTGCTCGTAAAGCATCTGAAGAAGTTGGTGCTCAAATAGTTTTAGGGGATCGGCCAATTGAAATAACTCTAGAAAGGGCATGGAACGCTTTGACATGGAACGAGAAGTTGAGCTTAGTAAGCTCAGTTATCCGTGGAATAACTTCACAATCTAATGTTTCTCAGAGCAATGATGAGGAAGCAGGTAGAGATGGGAGTTCCTTGCAGCTGTATGAGCAGCTCAGTTTTTCATATCCATCTCTTCTTCAACCTCTTATTCATGAACGAGACACTTACATTGCATGGTCTCTAAAGCGAAGCAAGGCGGTGAACAAGAGTAAAAGGGTGGTGGGGGTGATTGGAAGAGGCCATATGAACGGCGTCATCTATGCCATCATATCAGATCAAGGAAACTTGCGATTTCGAGACGTTGCAGGTAAGAGAGCTGGGGAAACCTCCAATGGCTTTGTTAGCAGTCTGTTGCAGAGCTTGGTTAGAGACACTATCATTGGTGTTCTCTTCTGGGTTTTATATGAACAATTGAAACAACTACATTTAGTGCCTTAG

Protein sequence

MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNRPFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNVSQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVIGRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQLKQLHLVP
Homology
[Close]
BLAST of CmaCh18G012200.1 vs. ExPASy Swiss-Prot
Match: Q99JY4 (TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-08
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 0 

Query: 31  RSINLGGQTALALRLLLAAFSSKISSDVNRPFGSEFRAA-RKASEEVGAQIVLGDRPIEI 90
           +++   G  +  +++LL   S+ I+  +    G EFR A ++AS+    +  LGDRPI +
Sbjct: 135 QAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPV 194

Query: 91  TLERAWNALTWNEKLSLVSSVIRGITSQSNVSQSNDEEAGRDGSSL-QLYEQLSFSYPSL 150
           T +RA  AL++ +K+ L      G+   S+    +D E  +    L Q+  ++   +P L
Sbjct: 195 TFKRAIAALSFWQKVKLA----WGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDL 254

Query: 151 LQPLIHERDTYIAWSLKRS-------KAVNKSKR------VVGVIGRGHMNGV 189
            + ++ ERD Y+ + L+++       +A +   R      VVGV+G GH+ G+
Sbjct: 255 HRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGI 303

[Close]
BLAST of CmaCh18G012200.1 vs. ExPASy Swiss-Prot
Match: Q9H4I3 (TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.3e-08
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 0 

Query: 31  RSINLGGQTALALRLLLAAFSSKISSDVNRPFGSEFRAA-RKASEEVGAQIVLGDRPIEI 90
           +++   G  +  +++LL   S+ I+  +    G EFR A ++AS+    +  LGDRPI +
Sbjct: 136 QAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPV 195

Query: 91  TLERAWNALTWNEKLSLVSSVIRGITSQSNVSQSNDEEAGRDGSSL-QLYEQLSFSYPSL 150
           T +RA  AL++ +K+ L      G+   S+    +D E  +    L Q+  ++   +P L
Sbjct: 196 TFKRAIAALSFWQKVRLA----WGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDL 255

Query: 151 LQPLIHERDTYIAWSLKRS-------KAVNKSKR------VVGVIGRGHMNGV 189
            + ++ ERD Y+ + L+++       +A +   R      VVGV+G GH+ G+
Sbjct: 256 HRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGI 304

[Close]
BLAST of CmaCh18G012200.1 vs. ExPASy Swiss-Prot
Match: Q58DF3 (TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-07
Identity = 49/173 (28.32%), Postives = 87/173 (50.29%), Query Frame = 0 

Query: 31  RSINLGGQTALALRLLLAAFSSKISSDVNRPFGSEFRAA-RKASEEVGAQIVLGDRPIEI 90
           ++I   G  +  +++LL   S+ I+  +    G EFR A ++AS     +  LGDRPI +
Sbjct: 136 QAIRQNGVASGLMQMLLLKVSAHITEQLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPV 195

Query: 91  TLERAWNALTWNEKLSLVSSVIRGITSQSNVSQSNDEEAGRDGSSL-QLYEQLSFSYPSL 150
           T +RA  AL+  +K+ L      G+   S+    +D E  +    L Q+  ++   +P L
Sbjct: 196 TFKRAIAALSLWQKVKLA----WGLCFLSDPISKDDVERCKQKDLLEQMMAEMVGEFPDL 255

Query: 151 LQPLIHERDTYIAWSLKRS-------KAVNKSKR------VVGVIGRGHMNGV 189
            + ++ ERD Y+ + L+++       +A +   R      VVGV+G GH+ G+
Sbjct: 256 HRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGI 304

[Close]
BLAST of CmaCh18G012200.1 vs. ExPASy Swiss-Prot
Match: Q58760 (Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1365 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 41/149 (27.52%), Postives = 79/149 (53.02%), Query Frame = 0 

Query: 45  LLLAAFSSKISSDVNRPFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKL 104
           L+LA    KI        GSE + A + + + G  I L DR I+ITL R  + +T+ EK+
Sbjct: 85  LILANSQKKIGESFGIKPGSEMKKAIEIASKYGLPIYLIDRDIDITLSRLMDRMTFKEKM 144

Query: 105 SLVSSVIRGITSQSNVSQSND---EEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIA 164
            +   ++   + + ++   +D   +        ++L +++S   P++ + L+ ERD ++A
Sbjct: 145 KIFWELLN--SDEEDLELDDDLLNDMVKNPEKFIKLLKEIS---PTIYEVLVDERDRFMA 204

Query: 165 WSLKRSKAVNKSKR-VVGVIGRGHMNGVI 190
              KR   ++K+K  +V V+G GH+ G++
Sbjct: 205 ---KRLFELSKNKNSLVAVVGAGHVEGIV 225

[Close]
BLAST of CmaCh18G012200.1 vs. ExPASy TrEMBL
Match: A0A6J1HYE5 (traB domain-containing protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467392 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.4e-131
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR
Sbjct: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV
Sbjct: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI
Sbjct: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ
Sbjct: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240

Query: 241 LKQLHLVP 249
           LKQLHLVP
Sbjct: 241 LKQLHLVP 248

[Close]
BLAST of CmaCh18G012200.1 vs. ExPASy TrEMBL
Match: A0A6J1HSC9 (traB domain-containing protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467392 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.4e-131
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR
Sbjct: 146 MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 205

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV
Sbjct: 206 PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 265

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI
Sbjct: 266 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 325

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ
Sbjct: 326 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 385

Query: 241 LKQLHLVP 249
           LKQLHLVP
Sbjct: 386 LKQLHLVP 393

[Close]
BLAST of CmaCh18G012200.1 vs. ExPASy TrEMBL
Match: A0A6J1HWV1 (traB domain-containing protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467392 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.4e-131
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR
Sbjct: 18  MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 77

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV
Sbjct: 78  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 137

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI
Sbjct: 138 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 197

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ
Sbjct: 198 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 257

Query: 241 LKQLHLVP 249
           LKQLHLVP
Sbjct: 258 LKQLHLVP 265

[Close]
BLAST of CmaCh18G012200.1 vs. ExPASy TrEMBL
Match: A0A6J1FZT1 (traB domain-containing protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449409 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.1e-128
Identity = 240/248 (96.77%), Postives = 247/248 (99.60%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR
Sbjct: 18  MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 77

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWN+KLSLVSSVIRGITSQSNV
Sbjct: 78  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNQKLSLVSSVIRGITSQSNV 137

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           S+SNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 138 SRSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 197

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHM+GVIYAIISDQG+LRFRDVAGKRAGE+SNGFVSSLLQSLVRDTIIGV+FWVLYEQ
Sbjct: 198 GRGHMSGVIYAIISDQGDLRFRDVAGKRAGESSNGFVSSLLQSLVRDTIIGVVFWVLYEQ 257

Query: 241 LKQLHLVP 249
           LKQ HLVP
Sbjct: 258 LKQQHLVP 265

[Close]
BLAST of CmaCh18G012200.1 vs. ExPASy TrEMBL
Match: A0A6J1FZS3 (traB domain-containing protein isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111449409 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.1e-128
Identity = 240/248 (96.77%), Postives = 247/248 (99.60%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR
Sbjct: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWN+KLSLVSSVIRGITSQSNV
Sbjct: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNQKLSLVSSVIRGITSQSNV 120

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           S+SNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 121 SRSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 180

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHM+GVIYAIISDQG+LRFRDVAGKRAGE+SNGFVSSLLQSLVRDTIIGV+FWVLYEQ
Sbjct: 181 GRGHMSGVIYAIISDQGDLRFRDVAGKRAGESSNGFVSSLLQSLVRDTIIGVVFWVLYEQ 240

Query: 241 LKQLHLVP 249
           LKQ HLVP
Sbjct: 241 LKQQHLVP 248

[Close]
BLAST of CmaCh18G012200.1 vs. NCBI nr
Match: XP_022968024.1 (traB domain-containing protein isoform X3 [Cucurbita maxima])

HSP 1 Score: 478.8 bits (1231), Expect = 2.9e-131
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR
Sbjct: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV
Sbjct: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI
Sbjct: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ
Sbjct: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240

Query: 241 LKQLHLVP 249
           LKQLHLVP
Sbjct: 241 LKQLHLVP 248

[Close]
BLAST of CmaCh18G012200.1 vs. NCBI nr
Match: XP_022968023.1 (traB domain-containing protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 478.8 bits (1231), Expect = 2.9e-131
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR
Sbjct: 18  MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 77

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV
Sbjct: 78  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 137

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI
Sbjct: 138 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 197

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ
Sbjct: 198 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 257

Query: 241 LKQLHLVP 249
           LKQLHLVP
Sbjct: 258 LKQLHLVP 265

[Close]
BLAST of CmaCh18G012200.1 vs. NCBI nr
Match: XP_022968022.1 (traB domain-containing protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 478.8 bits (1231), Expect = 2.9e-131
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR
Sbjct: 146 MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 205

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV
Sbjct: 206 PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 265

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI
Sbjct: 266 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 325

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ
Sbjct: 326 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 385

Query: 241 LKQLHLVP 249
           LKQLHLVP
Sbjct: 386 LKQLHLVP 393

[Close]
BLAST of CmaCh18G012200.1 vs. NCBI nr
Match: XP_023542004.1 (traB domain-containing protein isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128
Identity = 242/248 (97.58%), Postives = 246/248 (99.19%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 18  MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAVFSSKISSDVNR 77

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWN+KLSLVSSVIRGITSQSNV
Sbjct: 78  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNQKLSLVSSVIRGITSQSNV 137

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQSNDEEAGRDGSSLQLYEQLS SYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 138 SQSNDEEAGRDGSSLQLYEQLSCSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 197

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHMNGVIYAIISDQG+LRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGV+FWVLYEQ
Sbjct: 198 GRGHMNGVIYAIISDQGDLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVVFWVLYEQ 257

Query: 241 LKQLHLVP 249
           LKQLHLVP
Sbjct: 258 LKQLHLVP 265

[Close]
BLAST of CmaCh18G012200.1 vs. NCBI nr
Match: XP_023542003.1 (traB domain-containing protein isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128
Identity = 242/248 (97.58%), Postives = 246/248 (99.19%), Query Frame = 0 

Query: 1   MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVNR 60
           MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLA FSSKISSDVNR
Sbjct: 146 MYTLETGEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAVFSSKISSDVNR 205

Query: 61  PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNV 120
           PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWN+KLSLVSSVIRGITSQSNV
Sbjct: 206 PFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNQKLSLVSSVIRGITSQSNV 265

Query: 121 SQSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGVI 180
           SQSNDEEAGRDGSSLQLYEQLS SYPSLLQPLIHERDTY+AWSLKRSKAVNKSKRVVGVI
Sbjct: 266 SQSNDEEAGRDGSSLQLYEQLSCSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVI 325

Query: 181 GRGHMNGVIYAIISDQGNLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVLFWVLYEQ 240
           GRGHMNGVIYAIISDQG+LRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGV+FWVLYEQ
Sbjct: 326 GRGHMNGVIYAIISDQGDLRFRDVAGKRAGETSNGFVSSLLQSLVRDTIIGVVFWVLYEQ 385

Query: 241 LKQLHLVP 249
           LKQLHLVP
Sbjct: 386 LKQLHLVP 393

[Close]
BLAST of CmaCh18G012200.1 vs. TAIR 10
Match: AT5G52030.2 (TraB family protein )

HSP 1 Score: 318.5 bits (815), Expect = 4.6e-87
Identity = 168/249 (67.47%), Postives = 196/249 (78.71%), Query Frame = 0 

Query: 1   MYTLET-GEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVN 60
           MYT    GE  Q LKS   SL+G GFLGAVGRS++LGGQTALALRLLLA FSSK+SS  +
Sbjct: 145 MYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFSSKLSSVAD 204

Query: 61  RPFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSN 120
           RPFG EFRAARKASEEVGAQ+VLGDRPIEITL+RAWN+L W EK +LV +V R ITS S 
Sbjct: 205 RPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTRVITSSSG 264

Query: 121 VS--QSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVV 180
           +S  +  ++E   +  SLQLYE+LSFSYP+LL PLIHERDTY+AWSLKRSKAVN  K VV
Sbjct: 265 ISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVV 324

Query: 181 GVIGRGHMNGVIYAIISDQGNLRFRDVAGK------RAGETSNGFVSSLLQSLVRDTIIG 240
           GVIG+GHMNGVIYA++SD G+LRFRD+ G+        G TSNG++  +L+S VRDTIIG
Sbjct: 325 GVIGKGHMNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTIIG 384

[Close]
BLAST of CmaCh18G012200.1 vs. TAIR 10
Match: AT5G52030.1 (TraB family protein )

HSP 1 Score: 318.5 bits (815), Expect = 4.6e-87
Identity = 168/249 (67.47%), Postives = 196/249 (78.71%), Query Frame = 0 

Query: 1   MYTLET-GEPHQKLKSNMFSLSGDGFLGAVGRSINLGGQTALALRLLLAAFSSKISSDVN 60
           MYT    GE  Q LKS   SL+G GFLGAVGRS++LGGQTALALRLLLA FSSK+SS  +
Sbjct: 1   MYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFSSKLSSVAD 60

Query: 61  RPFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSN 120
           RPFG EFRAARKASEEVGAQ+VLGDRPIEITL+RAWN+L W EK +LV +V R ITS S 
Sbjct: 61  RPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTRVITSSSG 120

Query: 121 VS--QSNDEEAGRDGSSLQLYEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVV 180
           +S  +  ++E   +  SLQLYE+LSFSYP+LL PLIHERDTY+AWSLKRSKAVN  K VV
Sbjct: 121 ISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVV 180

Query: 181 GVIGRGHMNGVIYAIISDQGNLRFRDVAGK------RAGETSNGFVSSLLQSLVRDTIIG 240
           GVIG+GHMNGVIYA++SD G+LRFRD+ G+        G TSNG++  +L+S VRDTIIG
Sbjct: 181 GVIGKGHMNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTIIG 240

[Close]
BLAST of CmaCh18G012200.1 vs. TAIR 10
Match: AT2G32340.1 (TraB family protein )

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-15
Identity = 45/129 (34.88%), Postives = 76/129 (58.91%), Query Frame = 0 

Query: 63  GSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKLSLVSSVIRGITSQSNVSQ 122
           G+EFR   + + + G ++ LGDR ++ITL+R W  +    K+ LV S++       N  +
Sbjct: 186 GAEFRVGFEEANKYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKE 245

Query: 123 SND--EEAGRDGSSLQL-YEQLSFSYPSLLQPLIHERDTYIAWSLKRSKAVNKSKRVVGV 182
                ++ G DG  L L  +++S  +P+L++ L+HERD Y+A+ L R  + + S  VV V
Sbjct: 246 LEKMLKDLG-DGDMLTLAIQEMSTEFPTLMETLVHERDKYMAYQLLRIASEHSS--VVAV 305

Query: 183 IGRGHMNGV 189
           +GRGH+ G+
Sbjct: 306 VGRGHLQGI 311

[Close]
BLAST of CmaCh18G012200.1 vs. TAIR 10
Match: AT1G05270.1 (TraB family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-14
Identity = 46/146 (31.51%), Postives = 82/146 (56.16%), Query Frame = 0 

Query: 45  LLLAAFSSKISSDVNRPFGSEFRAARKASEEVGAQIVLGDRPIEITLERAWNALTWNEKL 104
           +L   F +KI+S +    G+EFR A + + + G +++LGDRP++ITL+R W  +    K+
Sbjct: 177 ILYGWFLAKIASHLEVFPGAEFRVAYEEAIKYGGKVILGDRPVQITLKRTWAKMPLWHKV 236

Query: 105 SLVSSVIRGITSQSNVSQSNDEEAGRDGSSL--QLYEQLSFSYPSLLQPLIHERDTYIAW 164
             + S++          +        D   +   + +++S  +P+L+  ++HERD Y+A 
Sbjct: 237 KFLYSILFQAVFLPGAEELEKMLKDMDNVDMVTLVIQEMSKEFPTLMDTIVHERDQYMAS 296

Query: 165 SLKRSKAVNKSKRVVGVIGRGHMNGV 189
           SL R  + + S  VV VIG+GH+NG+
Sbjct: 297 SLLRVASDHSS--VVAVIGKGHINGI 320

The following BLAST results are available for this feature:
BLAST of CmaCh18G012200.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q99JY47.1e-0827.75TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1[more]
Q9H4I39.3e-0827.75TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1[more]
Q58DF32.1e-0728.32TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1[more]
Q587601.7e-0627.52Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii (strain ATCC 430... [more]
BLAST of CmaCh18G012200.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HYE51.4e-131100.00traB domain-containing protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1HSC91.4e-131100.00traB domain-containing protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1HWV11.4e-131100.00traB domain-containing protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1FZT17.1e-12896.77traB domain-containing protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1FZS37.1e-12896.77traB domain-containing protein isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
BLAST of CmaCh18G012200.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022968024.12.9e-131100.00traB domain-containing protein isoform X3 [Cucurbita maxima][more]
XP_022968023.12.9e-131100.00traB domain-containing protein isoform X2 [Cucurbita maxima][more]
XP_022968022.12.9e-131100.00traB domain-containing protein isoform X1 [Cucurbita maxima][more]
XP_023542004.12.3e-12897.58traB domain-containing protein isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023542003.12.3e-12897.58traB domain-containing protein isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of CmaCh18G012200.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G52030.24.6e-8767.47TraB family protein [more]
AT5G52030.14.6e-8767.47TraB family protein [more]
AT2G32340.14.7e-1534.88TraB family protein [more]
AT1G05270.11.4e-1431.51TraB family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002816TraB/PrgY/GumN familyPFAMPF01963TraBcoord: 53..187
e-value: 3.8E-13
score: 49.9
NoneNo IPR availablePANTHERPTHR21530PHEROMONE SHUTDOWN PROTEINcoord: 13..242
NoneNo IPR availablePANTHERPTHR21530:SF0TRAB DOMAIN-CONTAINING PROTEINcoord: 13..242
NoneNo IPR availableCDDcd14726TraB_PrgY-likecoord: 50..189
e-value: 2.4574E-34
score: 119.6

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh18G012200CmaCh18G012200gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh18G012200.1:exon:1283CmaCh18G012200.1:exon:1283exon
CmaCh18G012200.1:exon:1284CmaCh18G012200.1:exon:1284exon
CmaCh18G012200.1:exon:1285CmaCh18G012200.1:exon:1285exon
CmaCh18G012200.1:exon:1286CmaCh18G012200.1:exon:1286exon
CmaCh18G012200.1:exon:1287CmaCh18G012200.1:exon:1287exon
CmaCh18G012200.1:exon:1288CmaCh18G012200.1:exon:1288exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh18G012200.1:cdsCmaCh18G012200.1:cdsCDS
CmaCh18G012200.1:cdsCmaCh18G012200.1:cds_2CDS
CmaCh18G012200.1:cdsCmaCh18G012200.1:cds_3CDS
CmaCh18G012200.1:cdsCmaCh18G012200.1:cds_4CDS
CmaCh18G012200.1:cdsCmaCh18G012200.1:cds_5CDS
CmaCh18G012200.1:cdsCmaCh18G012200.1:cds_6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh18G012200.1:three_prime_utrCmaCh18G012200.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh18G012200.1CmaCh18G012200.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0016310 phosphorylation
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0016301 kinase activity