CmaCh18G009420.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G009420.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr18: 8072651 .. 8073971 (+)
Sequence length	231
RNA-Seq Expression	CmaCh18G009420.1
Synteny	CmaCh18G009420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTTCATTGTACATTTTTTACTTGAAATGGCAGGGGGCAGGCATGAAGACTGAGGTGGGTAGAGAAGAAGCATCTATATTTTCTGAGACTTAATATGCTTCTTTCCACCATCAGTTTCATTGGAGCTTCTTGCATCGATTATGGTTGATGAAGAAGCTCATTGCTTTGGAATTTGCGTTAGTAGGCTGAGCTGTTTAGGTTGCTCTTGCTACTGATAATGACGAAAAGTTAAATCGAAGAATCAGCAACTCGCTGGGAATTTACCTGCAAGATCTTGGACGAAGGTATTTGATTTTTTTGAATGATATATCAACTGTTACCCTGCCTACACTACCCTTGCATTCTCTGTAAGTTTAACTTGAAACAAACGAGAAAAAATGAAAACGTGGATAAAAATTATTTTGTAATATTTGTTTGCTTTATGTCTGTTGATATAGTTTTAAGCTTTAGAACAATGTTATCATCTTCTTTAATGTCTGGTCTTTTAGTTGTTTACAATGTTACAGTCAAATGAAGGACAGTATATTGTTGGGAGGATATTAGAGGCTGTTAATTCTCAACTAGGGGATTTCTTCTTTTCATGTTGAGCCTACTATTTCTAAACCTATATTAGAGTGTCTTGTAAGGCTCAAAAGTTGTTAGGTGCTCCGTTTTATTTTTCCATTGAGGCCGAACCTAAACCTGTGCTCGAGAGATAGCTATCCATATACTGATAAGAGATATATGGACTCTCGAGAAGAGAGGAGCTAAGGTGGTCCCTCTTGGACTGCCCGGATCCCACGAGTGAATAGAAAGTCGAATCTACATTGGATCTCACCTGAATAGATCCATCTATCTTCCTGAGGAGAAGCTTGGTTTCAAACTCCGGTTCAATCAGGAGAATTACACCATGCTAATGTCTCTTGGATGATCTACATCTTAGTCTCAGGGTCAGGCGCTGTTGAGCACATTGAACTATCTATGTGGCTGATAGCCCTCAACCCTATACAACGACGTAATTATCAGGGGTGTGCTTTACCACTGAGCTACTAATAGCCTGTCGTGTGGGACTCCCGCTAAAATGAATTCTTGCACTGTGCTCTTTTGACATGGCTAGTACTGTTGATTTTTAGCTTCAGCTTTTTTGGCATAGCCATCATGCCCTATTATTTCTCTCCATTCGTTATTTTGGCTTCTCTTTAACCATGAAGTTCCGTTCCAGTTCTGAAGTTATATTGTTTACTTCTTCAGCGCATGGGAGGATATGGTTCTTCATCATTGCAAAACTAAAACTCAGAGCTGTGCTGCTAAGAACGCTAACGCTTCCGCCAAATGA

mRNA sequence

ATGGGCTTTTCATTGTACATTTTTTACTTGAAATGGCAGGGGGCAGGCATGAAGACTGAGGTTGCTCTTGCTACTGATAATGACGAAAAGTTAAATCGAAGAATCAGCAACTCGCTGGGAATTTACCTGCAAGATCTTGGACGAAGCGCATGGGAGGATATGGTTCTTCATCATTGCAAAACTAAAACTCAGAGCTGTGCTGCTAAGAACGCTAACGCTTCCGCCAAATGA

Coding sequence (CDS)

ATGGGCTTTTCATTGTACATTTTTTACTTGAAATGGCAGGGGGCAGGCATGAAGACTGAGGTTGCTCTTGCTACTGATAATGACGAAAAGTTAAATCGAAGAATCAGCAACTCGCTGGGAATTTACCTGCAAGATCTTGGACGAAGCGCATGGGAGGATATGGTTCTTCATCATTGCAAAACTAAAACTCAGAGCTGTGCTGCTAAGAACGCTAACGCTTCCGCCAAATGA

Protein sequence

MGFSLYIFYLKWQGAGMKTEVALATDNDEKLNRRISNSLGIYLQDLGRSAWEDMVLHHCKTKTQSCAAKNANASAK

Homology

[Close]

BLAST of CmaCh18G009420.1 vs. NCBI nr
Match: KAG6573881.1 (R3H domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 34  RISNSLGIYLQDLGRSAWEDMVLHHCKTKTQSCAAKNANASAK 77
           RISNSLGIYLQDLGRSAWEDMVLHHCKTKTQSCA ++    A+
Sbjct: 472 RISNSLGIYLQDLGRSAWEDMVLHHCKTKTQSCAERSVACPAR 514

[Close]

BLAST of CmaCh18G009420.1 vs. NCBI nr
Match: KAG7032010.1 (hypothetical protein SDJN02_06052, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 34/56 (60.71%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 21 VALATDNDEKLNRRISNSLGIYLQDLGRSAWEDMVLHHCKTKTQSCAAKNANASAK 77
          VALATDNDEKLN RI+N LG++LQDLGRS  EDM          SCA KNA    K
Sbjct: 8  VALATDNDEKLNIRINNLLGMFLQDLGRSIREDM----------SCACKNAKNLVK 53

[Close]

BLAST of CmaCh18G009420.1 vs. NCBI nr
Match: KAG7012945.1 (R3H domain-containing protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 50  AWEDMVLHHCKTKTQSCAAKNANASAK 77
           AWEDMVLHHCKTKTQSCA  NANASAK
Sbjct: 473 AWEDMVLHHCKTKTQSCAGTNANASAK 499

The following BLAST results are available for this feature:

BLAST of CmaCh18G009420.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G009420.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G009420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573881.1	1.3e-10	81.40	R3H domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7032010.1	2.8e-05	60.71	hypothetical protein SDJN02_06052, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7012945.1	1.4e-04	92.59	R3H domain-containing protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmaCh18G009420.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh18G009420	CmaCh18G009420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G009420.1:exon:124	CmaCh18G009420.1:exon:124	exon
CmaCh18G009420.1:exon:125	CmaCh18G009420.1:exon:125	exon
CmaCh18G009420.1:exon:126	CmaCh18G009420.1:exon:126	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G009420.1:cds	CmaCh18G009420.1:cds	CDS
CmaCh18G009420.1:cds	CmaCh18G009420.1:cds_2	CDS
CmaCh18G009420.1:cds	CmaCh18G009420.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh18G009420.1	CmaCh18G009420.1-protein	polypeptide