CmaCh17G004490.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G004490.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	PLAC8 family protein
Location	Cma_Chr17: 2674587 .. 2674790 (+)
Sequence length	204
RNA-Seq Expression	CmaCh17G004490.1
Synteny	CmaCh17G004490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGCCTCCTGCACAGCAGATGTCTCGGATGACTCAACCGGTTCCTGATCCGGATGGTTATCCTCCTCCTATGGTGTCTGGACAACCATTCGGATACCCGCCCCCTCCCCCGGCTCAAGGCTACCCGGTCCCAGCTCATTATCAAGGCTATCCGGCAACGGGTTATGCTCCGTATCCGCCTGCGGGTCAATACAATTGA

mRNA sequence

ATGGCTGTGCCTCCTGCACAGCAGATGTCTCGGATGACTCAACCGGTTCCTGATCCGGATGGTTATCCTCCTCCTATGGTGTCTGGACAACCATTCGGATACCCGCCCCCTCCCCCGGCTCAAGGCTACCCGGTCCCAGCTCATTATCAAGGCTATCCGGCAACGGGTTATGCTCCGTATCCGCCTGCGGGTCAATACAATTGA

Coding sequence (CDS)

ATGGCTGTGCCTCCTGCACAGCAGATGTCTCGGATGACTCAACCGGTTCCTGATCCGGATGGTTATCCTCCTCCTATGGTGTCTGGACAACCATTCGGATACCCGCCCCCTCCCCCGGCTCAAGGCTACCCGGTCCCAGCTCATTATCAAGGCTATCCGGCAACGGGTTATGCTCCGTATCCGCCTGCGGGTCAATACAATTGA

Protein sequence

MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPYPPAGQYN

Homology

[Close]

BLAST of CmaCh17G004490.1 vs. ExPASy TrEMBL
Match: A0A6J1L0Q2 (uncharacterized protein LOC111499309 OS=Cucurbita maxima OX=3661 GN=LOC111499309 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.0e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 60
           MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY
Sbjct: 188 MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 247

Query: 61  PPAGQYN 68
           PPAGQYN
Sbjct: 248 PPAGQYN 254

[Close]

BLAST of CmaCh17G004490.1 vs. ExPASy TrEMBL
Match: A0A6J1H6N2 (uncharacterized protein LOC111460102 OS=Cucurbita moschata OX=3662 GN=LOC111460102 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 60
           MAVPP Q+MSRMTQPVPDPDGYPPP VSGQPFGYPPPPPAQGYPVPAHYQGYP TGYAPY
Sbjct: 188 MAVPPTQEMSRMTQPVPDPDGYPPPTVSGQPFGYPPPPPAQGYPVPAHYQGYPPTGYAPY 247

Query: 61  PPAGQYN 68
           P  GQYN
Sbjct: 248 PTPGQYN 254

[Close]

BLAST of CmaCh17G004490.1 vs. ExPASy TrEMBL
Match: A0A6J1HHP6 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111464171 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.3e-11
Identity = 45/70 (64.29%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYP----ATG 60
           MAVPP QQMSR+ QP+P P GYPPPM  GQPFG+PPPP  QGYP P   QGYP    A G
Sbjct: 188 MAVPPTQQMSRINQPIPGPVGYPPPMY-GQPFGHPPPPYVQGYPPPPSAQGYPPPPLAQG 247

Query: 61  YAPYPPAGQY 67
           YA  PP   Y
Sbjct: 248 YASPPPTQGY 256

[Close]

BLAST of CmaCh17G004490.1 vs. ExPASy TrEMBL
Match: A0A6J1KKE2 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494826 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.2e-10
Identity = 44/70 (62.86%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYP----ATG 60
           MAVPP QQMSR+ QP+P P GYPPPM  GQPFG+P PP  QGYP P   QGYP    A G
Sbjct: 188 MAVPPTQQMSRINQPIPGPVGYPPPMY-GQPFGHPAPPYVQGYPPPPSAQGYPPPPLAQG 247

Query: 61  YAPYPPAGQY 67
           YA  PP   Y
Sbjct: 248 YASPPPTQGY 256

[Close]

BLAST of CmaCh17G004490.1 vs. ExPASy TrEMBL
Match: A0A1U8A104 (uncharacterized protein LOC104596004 OS=Nelumbo nucifera OX=4432 GN=LOC104596004 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 43/69 (62.32%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGY-PVPAHY--QGYPATGY 60
           MAVPP QQMSR+ QP+P P GY P    GQP+GYPPP   QGY P PA Y   GYP  GY
Sbjct: 186 MAVPPIQQMSRIDQPIPPPVGYQPQPAYGQPYGYPPPSQPQGYPPAPAGYPPAGYPPAGY 245

Query: 61  AP--YPPAG 65
            P  YPPAG
Sbjct: 246 PPAGYPPAG 254

[Close]

BLAST of CmaCh17G004490.1 vs. NCBI nr
Match: XP_023006645.1 (uncharacterized protein LOC111499309 [Cucurbita maxima] >XP_023006647.1 uncharacterized protein LOC111499309 [Cucurbita maxima])

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 60
           MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY
Sbjct: 188 MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 247

Query: 61  PPAGQYN 68
           PPAGQYN
Sbjct: 248 PPAGQYN 254

[Close]

BLAST of CmaCh17G004490.1 vs. NCBI nr
Match: KAG7013754.1 (hypothetical protein SDJN02_23921, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-26
Identity = 62/67 (92.54%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 60
           MAVPP QQMSRMTQPVPDPDGYPPP VSGQPFGYPPPPPAQGYPVPAHYQGYP TGYAPY
Sbjct: 217 MAVPPTQQMSRMTQPVPDPDGYPPPTVSGQPFGYPPPPPAQGYPVPAHYQGYPPTGYAPY 276

Query: 61  PPAGQYN 68
           P  GQYN
Sbjct: 277 PTPGQYN 283

[Close]

BLAST of CmaCh17G004490.1 vs. NCBI nr
Match: XP_022958972.1 (uncharacterized protein LOC111460102 [Cucurbita moschata] >XP_022958974.1 uncharacterized protein LOC111460102 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 5.7e-26
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 60
           MAVPP Q+MSRMTQPVPDPDGYPPP VSGQPFGYPPPPPAQGYPVPAHYQGYP TGYAPY
Sbjct: 188 MAVPPTQEMSRMTQPVPDPDGYPPPTVSGQPFGYPPPPPAQGYPVPAHYQGYPPTGYAPY 247

Query: 61  PPAGQYN 68
           P  GQYN
Sbjct: 248 PTPGQYN 254

[Close]

BLAST of CmaCh17G004490.1 vs. NCBI nr
Match: KAG6575191.1 (hypothetical protein SDJN03_25830, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 61/67 (91.04%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 60
           MAVPP QQMSRMTQPVPDPDGYPPP VSGQPFGYPPPPPA GYPVPAHYQGYP TGYAPY
Sbjct: 221 MAVPPTQQMSRMTQPVPDPDGYPPPTVSGQPFGYPPPPPAPGYPVPAHYQGYPPTGYAPY 280

Query: 61  PPAGQYN 68
           P  GQYN
Sbjct: 281 PTPGQYN 287

[Close]

BLAST of CmaCh17G004490.1 vs. NCBI nr
Match: XP_023547403.1 (uncharacterized protein LOC111806364 [Cucurbita pepo subsp. pepo] >XP_023547404.1 uncharacterized protein LOC111806364 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 3.7e-25
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 60
           MAVPP QQMSRM QPVPDPDGYPPP VSGQPFGYPPPPPAQGYPVPAHY+GYP TGYAPY
Sbjct: 188 MAVPPTQQMSRMAQPVPDPDGYPPPPVSGQPFGYPPPPPAQGYPVPAHYRGYPPTGYAPY 247

Query: 61  PPAGQYN 68
           P  GQYN
Sbjct: 248 PTPGQYN 254

[Close]

BLAST of CmaCh17G004490.1 vs. TAIR 10
Match: AT5G41390.1 (PLAC8 family protein )

HSP 1 Score: 50.8 bits (120), Expect = 4.8e-07
Identity = 42/78 (53.85%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPP----PPAQGYPVPAHYQGY-PAT 60
           M+VPPAQQMSR+ QPVP   GYPP     Q + YP P    PPA GYP P H  GY PA 
Sbjct: 187 MSVPPAQQMSRIDQPVPPYAGYPPATGYPQHY-YPQPGHGYPPAPGYPPPGH--GYPPAP 246

Query: 61  GYAP-------YPPAGQY 67
           GY P       YPPA  Y
Sbjct: 247 GYPPAPGYPSGYPPAPGY 261

[Close]

BLAST of CmaCh17G004490.1 vs. TAIR 10
Match: AT5G41390.2 (PLAC8 family protein )

HSP 1 Score: 50.8 bits (120), Expect = 4.8e-07
Identity = 42/78 (53.85%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPP----PPAQGYPVPAHYQGY-PAT 60
           M+VPPAQQMSR+ QPVP   GYPP     Q + YP P    PPA GYP P H  GY PA 
Sbjct: 129 MSVPPAQQMSRIDQPVPPYAGYPPATGYPQHY-YPQPGHGYPPAPGYPPPGH--GYPPAP 188

Query: 61  GYAP-------YPPAGQY 67
           GY P       YPPA  Y
Sbjct: 189 GYPPAPGYPSGYPPAPGY 203

[Close]

BLAST of CmaCh17G004490.1 vs. TAIR 10
Match: AT4G23470.1 (PLAC8 family protein )

HSP 1 Score: 46.6 bits (109), Expect = 9.1e-06
Identity = 33/62 (53.23%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 60
           MAVPPAQQMSR  Q  P   GYPP      P GYP  PP QGYP   + Q  P + Y+ Y
Sbjct: 185 MAVPPAQQMSRFDQATPPAVGYPPQQ-GYPPSGYPQHPP-QGYPPSGYPQNPPPSAYSQY 244

Query: 61  PP 63
           PP
Sbjct: 245 PP 244

[Close]

BLAST of CmaCh17G004490.1 vs. TAIR 10
Match: AT4G23470.2 (PLAC8 family protein )

HSP 1 Score: 46.6 bits (109), Expect = 9.1e-06
Identity = 33/62 (53.23%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHYQGYPATGYAPY 60
           MAVPPAQQMSR  Q  P   GYPP      P GYP  PP QGYP   + Q  P + Y+ Y
Sbjct: 129 MAVPPAQQMSRFDQATPPAVGYPPQQ-GYPPSGYPQHPP-QGYPPSGYPQNPPPSAYSQY 188

Query: 61  PP 63
           PP
Sbjct: 189 PP 188

[Close]

BLAST of CmaCh17G004490.1 vs. TAIR 10
Match: AT1G63830.2 (PLAC8 family protein )

HSP 1 Score: 43.5 bits (101), Expect = 7.7e-05
Identity = 32/55 (58.18%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 1   MAVPPAQQMSRMTQPVPDPDGYPPPMVSGQPFGYPPPPPAQGYPVPAHY--QGYP 54
           M VPPAQQMSR  QPVP P GYP             PPPAQGYP PA Y   GYP
Sbjct: 187 MGVPPAQQMSRFDQPVPPPVGYPQSY----------PPPAQGYP-PASYPPPGYP 230

The following BLAST results are available for this feature:

BLAST of CmaCh17G004490.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G004490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L0Q2	7.0e-30	100.00	uncharacterized protein LOC111499309 OS=Cucurbita maxima OX=3661 GN=LOC111499309...	[more]
A0A6J1H6N2	2.8e-26	91.04	uncharacterized protein LOC111460102 OS=Cucurbita moschata OX=3662 GN=LOC1114601...	[more]
A0A6J1HHP6	7.3e-11	64.29	leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KKE2	6.2e-10	62.86	leucine-rich repeat extensin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1U8A104	5.2e-09	62.32	uncharacterized protein LOC104596004 OS=Nelumbo nucifera OX=4432 GN=LOC104596004...	[more]

BLAST of CmaCh17G004490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006645.1	1.5e-29	100.00	uncharacterized protein LOC111499309 [Cucurbita maxima] >XP_023006647.1 uncharac...	[more]
KAG7013754.1	2.6e-26	92.54	hypothetical protein SDJN02_23921, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022958972.1	5.7e-26	91.04	uncharacterized protein LOC111460102 [Cucurbita moschata] >XP_022958974.1 unchar...	[more]
KAG6575191.1	1.3e-25	91.04	hypothetical protein SDJN03_25830, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023547403.1	3.7e-25	89.55	uncharacterized protein LOC111806364 [Cucurbita pepo subsp. pepo] >XP_023547404....	[more]

BLAST of CmaCh17G004490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41390.1	4.8e-07	53.85	PLAC8 family protein	[more]
AT5G41390.2	4.8e-07	53.85	PLAC8 family protein	[more]
AT4G23470.1	9.1e-06	53.23	PLAC8 family protein	[more]
AT4G23470.2	9.1e-06	53.23	PLAC8 family protein	[more]
AT1G63830.2	7.7e-05	58.18	PLAC8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..40

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh17G004490	CmaCh17G004490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G004490.1:exon:2451	CmaCh17G004490.1:exon:2451	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G004490.1:cds	CmaCh17G004490.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh17G004490.1	CmaCh17G004490.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane