CmaCh16G011450.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011450.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein GAMETE CELL DEFECTIVE 1, mitochondrial
Location	Cma_Chr16: 8797676 .. 8803512 (-)
Sequence length	1789
RNA-Seq Expression	CmaCh16G011450.1
Synteny	CmaCh16G011450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATTCTTTCCTAAACCCTGCTTCACATTCCTCCCTCCCTCCCATTTCCAGCTACACCACGCACCGTCGCACGCCGCTCCTGCCCGACATACTCGCCGCCGCTCCCTTCCTCCCTCTTACTTACACTCCCTCGTTTCTCCGAGCAATCAGAGTTAGTTATCTCTGTTGTTTTTTTCTTTCTCCGAAATATATAACAACGGTTCAGTCAGTCACAACTCTCGCTGCTGGTGAGGTCCGTTCGCCCCTCATTTTTCAGATCCAGCCCCAAGGTTTCGATATTTTGTTCTATTTTTATTTTGTTTAGTTGACATATTCTGTTCCTCACGAAGAAGAATCAACGAATTGATGTTTTTTTTTTTCTTTTTGTTGGTATCTTCTTCAGCCAATGTTCATTCAATCCAAATGAAAACGTAAGACTAAAAATACTTCACATGTTAGAAGAAAAAACAGATTGAATCAATAGATTAAAAAAAAAAAAAAAGCATAATATTTTTATCCGAATTAAGAAATAAAAAGAAAAAAAAAACTGAGAAGATGAACTAAACAAGAAAGAAAACTCACCTCTAGTTTGCTTGGCTGTAAAAAAGAAACTTGTTGTATTCGAAAAGCTATTTGGCACCAATTTGAGTGATTTCAGCTTCATTTTTCTTCAGGTTCTGGTTTTTTAGGGATACCGAGTTGTTCTTGTGGCATTTTCAGAGGCTTGTAATTTGACCATGCAAAATCTGCATCATTTCATTTGTCGTCTCAGTTCCACTTCTCTTGGGAAAAGCACAAATGTGGGATCTAGTTTAATTACTGATTCAGTTTCCACATTGAAGCATGTTCAAGGAGCTTGGTTAACCACTTTGAGAGAGTTCTCTGCAAAATCTGGTGGATTTGATGAAGCTAATTCTAAGAATGAATGGGATAAGAGTGTGAGTGAATCGTTTTCTGGCACCACGTCAGATGATTTAGGCTGGGATTCTGTTTCCTCTTGGTCTACTGGATTGACCAAAGAGCATTTTGATGGAGAGGCTGTAGGCCGCAGGGTTGGTGAAGGGGGGGATTCACCAAAATCTCCACAGTCTTCATTAGTTTCTGGGTTGCAAGAGTTTGAAGATAGAATAAGGGAATTAGAGGCAGAAAATCGGAAAAGCAAGGACTTCGTGGACAAGTGGGGTGAAAGGATGAAAGAGATGAGCATGCTTTTGAAACAAGTGAGAGAACCTGGTGCTAGAGGGTCTTATCTCAAGGACTCGGAGAAGGCCGAGATGTATCGCTTGCACAAGGAGAACCCTGAGGTATATACTGTTGAGAAGCTTGCTAAAGATTACAGGATTATGAGGCAAAGGGTTCACGCCATTCTTTGGCTGAAAGAGCTTGAAGAGGAAGAGGAGAAAAAACTGGGCCACCCCTTGGATGATTCTGTTGAGCTTTTACTTGATACCTGCCCAGAGTATGTCACAAGTTTCTACCTTATAAAATTTAGATGGATATTAGCATAGCATCTTAAGAACGATTTACACCTTTATATTTTTTCTCTTTGCAAAATCGTTTTCACTCTTTCTTGGAAAAATGAAAACATAGTTCTTAGGACTTTTTTTCTATAGTATCTGGACTTAAGATTTAAAGGAAACAAACCACAGATAGATATATGATTTGGCATCAGAACACCTGTTTTGTTTTTTATGTTTACAATTTCTTAATCTTTATTTTTATTTATATGTAAGTTATTTTAGGAAGATACATGTTTCCTTGTCTAACTTTTAACAGATGTATGGATGGATAAATTATAAAGGATGTGAAATTTGCAATTGTATAATTAAAATTTCCCCCAACTAATTACTCTTTTTCTTCATAAAACCTCCTGTTGATTATACACGATGTACACACATATAGTAGGTAAATTATTTTCTCTTTTTAAATTTTAATATTTTACAAGTCAGGTATTATAAATACTATAATCCTTTAAGGTGAAGTCCAATGTTTCGAAGTCTTGGTTTTAGCAGACGATTTACTGTCTTAAGGTTATTTTGATTGTATTAATGCTCCTAATGTATGATTGATTTTGAAAGTAAAAGGATTAGATGTGAACTTGCATAAGATTTTGAATTTACCATGCAAAAGATTTTTAAGTATGAAGATTAAGTCATTTACCATTGTCATCTTATCTTCCTTATGGCCAGCTACAAGATTTCTTATCTCGTTTACCATTGGCATCTTTTCTCATTTACCATTGTTATTGTTTCTCGCAGATTCTTTAAATCCCACGACCTGGAATTCCATGTGGCATCCCTTCCATACAAACCCGATTTCAAGGTTATGCCGGAAGGTTGGGATGGTACAACCAGAGATTTGGATGAAGTCCATTACGAGATCTCCAAAAAAGAAGATGATATGCTGTATAAAGAATTTGTCGAGAAGATGAATTTCAACAAAAAGAAAGTAAGTTTTGCTGTACTTTTGCTACACTCTATTTGGATTTGGAATGGCTGCGTGAGTATTGAAAGAGAATCTTCTTGAATCCATTTTGAATCCATTTACCAAATGATTTTTACTTGATTGAACTTGGATGGTTCTGAAATGTGAAATTGCATTAATGATTAATTTTTTTAAAGGCTAAAGGTAGCCTTGAAGTTTTTTCTCTTGAAGAGGATAACGCCTCAAGTTTATTCTTTTTTATTCAGAATTTGTCTTATTGATGTATAAGATTTACGAAAGGGATGATAGATCCATGATGGTTACAAAAGAAAGAGTCTCCAATCAAGAAAAATAAAACCAAGAGAAAAATTACAAAAGGAACTTGTCACTGATGCCCAAAGAGGGACATTAAGTCTCACTAAGGACCAAACATTAAAGGACTCCCTCTCCAACCCTCTAAAACTCTAGTATTTCTTTCCCCATGATTCTCTCAATACGACACTCCCCCCAACTTTCCATAAAAAAAACAACCTTCCCCCTTAAACGGTAAATGGAGAAGGGAATTCCTCGATTATTTCACTAAAAGCTTTGTGATGGGCAATTTAAAGTTCAAATACTTTGAAGCAAAAATTTCAACTCGTCAACTCCAAAACAGATGATCCAGATCTTCTAACTCTCTCTGATGCAGAATGCAATAGAAAGGCCCAACCTAGGATGATAACTTTCTTGAATGCCTGTCTATAAGGTCAGTCACTTTCTCAAAATAACCAACAATCTTGAAAAGGTTGTTTAGGGAGCTTTCGTTGCCAAAGGGGAGAAACGAATGGTGTCATTGACAAATTGGATATGGTTTATGCTAACCTCGCCATTTCCACATGGAAGCCTTTAATTTGATTGTGAGACTCAGCGTTAGTGAGGAGCCTACTGAGGCTGTCCATGAAGAGGATAGGGGACAAAAGGTCTTCTTGACGTAGCCCACTAGTGACTAAGGTCTTTCCCTTGGTTATTCTTTAATGATAATAGATAAATTTGCCGATGATATACAACCTTTAATCTCCAATGTCTCCTTTTTTGGCCAAAACCCTTTGCAGCAAAAATATTTTGAAGAAAAATCAATCAAACTTGTTGAATGCGTTTTAAGTGTCTAATTTAATGACCGTCCCTTTCCCCTTTTCCTTTTCCATTCGTCAATAAGTTTGTTATCCATATGAGAGGCATCAATGGTTTGTCTACCTTCTCCAAAAGTTGTTTGATAGTGGTGGTATGGGGAAGGACTCTTTTAAGACACTTGAAGAGTACATGGGCCACAATCTGAAAAAAGAAAAAAAAAACTTGGATCACTCATAATATTGCACTTAGGATGTTAATACCTTTTTTAAAAAAGAATTTGGAATGTATAACCACCTGGGGCTCGTAGACTTGGGATTGCCAAAGCTCTGTACAGCTTTCCAAACTTCTAATTCAGTAAAAGTGGTTCGTGGTGATCGATGGGACTCCAGTCAGTAACCGAAGGGAAAACCTCTAGATAATCCTTCTTGTAGTGGATGGAATCCCGAAAATGGACCTTTTCTCTCCTAAGTGGCCTGGGTACAATGGAAGAAGCCATTTTTTGCTTCTCCCTCCTCTATCCATCTATTTTTACATTTTTGTTTCCAAGATATACCTTCTTTGGCTGCAAAAGACAATAATTCAGCTTGCATAGACTTTCTTGGTGTGCTGTTCAATAGAGATAGGTCCTGAATCGCCTAAGGCATCAATGATTGATATTTCAGCCAAGAGCTGATTTCTTTTGATAGAGAGACGGCCATTACCATTCCTGATTCATGACTTAATCACAGTTTTCAAACCTTTAGCTTTTGAATAAATTCATGGCCCGATCATCCCCTAATGAGAGTATTCTTCCACCAGTATTCGAACAAAGGGACAAAGAAGGAGCGTTGAAGCCTCATATTTTCTGGGAAAAAATGAGGGACCCTAGTTTGTGTTGCCCAAAGAGAGAAGGGTGAAAATGGTCTGATGTCAGTGTATCAAGCCTTTTGACCCCAACTTTCGAGAATTTTTCAAGGGCATTTTCAGTGATAACGAATCTGTCCATGAATGTTTTAGTTGGAGAGGTTCTGTTATTTGACCCAAGTGAACAGCCCATTTGGAGTGGGGTATCTATCAAGTCAGCACTGGAAATGAAAGACTTGAATAGTCTCATACGTCTGGAAGCCTTCCCATTAAACTTTTCATTGCCCATCAAAATAGGTTGAAGTCCCCTCCCAGCCAGTTTCCAGAACATAAAAAGGGGAGGTCAGGGAGATCTTGCCAAAATGGGGGCAAACCCTTGTACCTCGAGTGGCCATAGATCCCTGTAATCCACAACTTGAAACTATCAACTGTAGTGAAAAGGGTAGAAAGGGAGAACACATCTTTTGTCACGTTCGGGGTCATTCCACGTGATAAGAATGCCACTTGATGAGCCCCAGAAATCCAAAGAACTAAGAAGTCCATCCAATGTGTCTGGACTCCATAGAAATTTGACAATGAGTCTATCGATAGAGGCCAACTTTGTTTTCAATGCTTTCAAAGTTACAATAATGGAAGTAGTAACAGTTCAAACTGTCAAAACTTAAAATTTTATATTCTATTATAAATTTTTGAAGAATGATACAAATTAATATTATCCTTCTAATCATTGCACAAGGTGTTATAGACTTTAGATCTAAAATTGAGAGTCTTCCTTAAGGCGTAAGCCTCAATAGCAGCCTCTTAAAACAATGAATGATGATAATGGATTTGATTGAAGGGGGATGGTAGACATGATGTCTAATGGTATAAAGGTGTACAAATGCAATGGAACTCAATTTTCCATTTTCACATAATAACTATTTCTTTGAAATGCAGATTGCAGGAGAGGTCTTCCGCCACAAATATAGTAGGCGTCGGGCTGCAGATGGGTGGAAATTCACAATAGAGAAAATGGGACCACGAGGGAAACGGGGAGGTGACGGTGGATGGAAGTTCGTCAGCTTGCCTGATGGTTCTAGCAGGCCATTGAACGAAATGGAGAAGATGTATGTGAGGCGAGAGACACCTCGCCATCGACGTAAAATCCTCCCTTGATAAGTTTCAAGCACTTGCACGTCGATCTAAGTGTGCATTTGATGATATAAATAGTTCGAAAAAAAACTGGTAGAACCCCCAGGATGATTTCATAATTTTCTTTTGACTGACCTGTTTTTTATTGAACTTCATGCTTTGTTGTAGTAGTTTTCCCTGATGGTTCACATCTGCAATAACAGGTTTTCTTCTTGCCTCTCTATCTCTCTCTCAGTTATGGGATGTTTTTTTTGTTTTTTTTTTTTTTGGTATCTTATTTCCAATGCTTTCTAAATAATGTAGCCCAAAGATAATTGATTATATAGTTGAAAGTTGAAATTACCTTTA

mRNA sequence

TTTTATTCTTTCCTAAACCCTGCTTCACATTCCTCCCTCCCTCCCATTTCCAGCTACACCACGCACCGTCGCACGCCGCTCCTGCCCGACATACTCGCCGCCGCTCCCTTCCTCCCTCTTACTTACACTCCCTCGTTTCTCCGAGCAATCAGAGTTAGTTATCTCTGTTGTTTTTTTCTTTCTCCGAAATATATAACAACGGTTCAGTCAGTCACAACTCTCGCTGCTGGTGAGGTCCGTTCGCCCCTCATTTTTCAGATCCAGCCCCAAGGTTCTGGTTTTTTAGGGATACCGAGTTGTTCTTGTGGCATTTTCAGAGGCTTGTAATTTGACCATGCAAAATCTGCATCATTTCATTTGTCGTCTCAGTTCCACTTCTCTTGGGAAAAGCACAAATGTGGGATCTAGTTTAATTACTGATTCAGTTTCCACATTGAAGCATGTTCAAGGAGCTTGGTTAACCACTTTGAGAGAGTTCTCTGCAAAATCTGGTGGATTTGATGAAGCTAATTCTAAGAATGAATGGGATAAGAGTGTGAGTGAATCGTTTTCTGGCACCACGTCAGATGATTTAGGCTGGGATTCTGTTTCCTCTTGGTCTACTGGATTGACCAAAGAGCATTTTGATGGAGAGGCTGTAGGCCGCAGGGTTGGTGAAGGGGGGGATTCACCAAAATCTCCACAGTCTTCATTAGTTTCTGGGTTGCAAGAGTTTGAAGATAGAATAAGGGAATTAGAGGCAGAAAATCGGAAAAGCAAGGACTTCGTGGACAAGTGGGGTGAAAGGATGAAAGAGATGAGCATGCTTTTGAAACAAGTGAGAGAACCTGGTGCTAGAGGGTCTTATCTCAAGGACTCGGAGAAGGCCGAGATGTATCGCTTGCACAAGGAGAACCCTGAGGTATATACTGTTGAGAAGCTTGCTAAAGATTACAGGATTATGAGGCAAAGGGTTCACGCCATTCTTTGGCTGAAAGAGCTTGAAGAGGAAGAGGAGAAAAAACTGGGCCACCCCTTGGATGATTCTGTTGAGCTTTTACTTGATACCTGCCCAGAATTCTTTAAATCCCACGACCTGGAATTCCATGTGGCATCCCTTCCATACAAACCCGATTTCAAGGTTATGCCGGAAGGTTGGGATGGTACAACCAGAGATTTGGATGAAGTCCATTACGAGATCTCCAAAAAAGAAGATGATATGCTGTATAAAGAATTTGTCGAGAAGATGAATTTCAACAAAAAGAAAATTGCAGGAGAGGTCTTCCGCCACAAATATAGTAGGCGTCGGGCTGCAGATGGGTGGAAATTCACAATAGAGAAAATGGGACCACGAGGGAAACGGGGAGGTGACGGTGGATGGAAGTTCGTCAGCTTGCCTGATGGTTCTAGCAGGCCATTGAACGAAATGGAGAAGATGTATGTGAGGCGAGAGACACCTCGCCATCGACGTAAAATCCTCCCTTGATAAGTTTCAAGCACTTGCACGTCGATCTAAGTGTGCATTTGATGATATAAATAGTTCGAAAAAAAACTGGTAGAACCCCCAGGATGATTTCATAATTTTCTTTTGACTGACCTGTTTTTTATTGAACTTCATGCTTTGTTGTAGTAGTTTTCCCTGATGGTTCACATCTGCAATAACAGGTTTTCTTCTTGCCTCTCTATCTCTCTCTCAGTTATGGGATGTTTTTTTTGTTTTTTTTTTTTTTGGTATCTTATTTCCAATGCTTTCTAAATAATGTAGCCCAAAGATAATTGATTATATAGTTGAAAGTTGAAATTACCTTTA

Coding sequence (CDS)

ATGCAAAATCTGCATCATTTCATTTGTCGTCTCAGTTCCACTTCTCTTGGGAAAAGCACAAATGTGGGATCTAGTTTAATTACTGATTCAGTTTCCACATTGAAGCATGTTCAAGGAGCTTGGTTAACCACTTTGAGAGAGTTCTCTGCAAAATCTGGTGGATTTGATGAAGCTAATTCTAAGAATGAATGGGATAAGAGTGTGAGTGAATCGTTTTCTGGCACCACGTCAGATGATTTAGGCTGGGATTCTGTTTCCTCTTGGTCTACTGGATTGACCAAAGAGCATTTTGATGGAGAGGCTGTAGGCCGCAGGGTTGGTGAAGGGGGGGATTCACCAAAATCTCCACAGTCTTCATTAGTTTCTGGGTTGCAAGAGTTTGAAGATAGAATAAGGGAATTAGAGGCAGAAAATCGGAAAAGCAAGGACTTCGTGGACAAGTGGGGTGAAAGGATGAAAGAGATGAGCATGCTTTTGAAACAAGTGAGAGAACCTGGTGCTAGAGGGTCTTATCTCAAGGACTCGGAGAAGGCCGAGATGTATCGCTTGCACAAGGAGAACCCTGAGGTATATACTGTTGAGAAGCTTGCTAAAGATTACAGGATTATGAGGCAAAGGGTTCACGCCATTCTTTGGCTGAAAGAGCTTGAAGAGGAAGAGGAGAAAAAACTGGGCCACCCCTTGGATGATTCTGTTGAGCTTTTACTTGATACCTGCCCAGAATTCTTTAAATCCCACGACCTGGAATTCCATGTGGCATCCCTTCCATACAAACCCGATTTCAAGGTTATGCCGGAAGGTTGGGATGGTACAACCAGAGATTTGGATGAAGTCCATTACGAGATCTCCAAAAAAGAAGATGATATGCTGTATAAAGAATTTGTCGAGAAGATGAATTTCAACAAAAAGAAAATTGCAGGAGAGGTCTTCCGCCACAAATATAGTAGGCGTCGGGCTGCAGATGGGTGGAAATTCACAATAGAGAAAATGGGACCACGAGGGAAACGGGGAGGTGACGGTGGATGGAAGTTCGTCAGCTTGCCTGATGGTTCTAGCAGGCCATTGAACGAAATGGAGAAGATGTATGTGAGGCGAGAGACACCTCGCCATCGACGTAAAATCCTCCCTTGA

Protein sequence

MQNLHHFICRLSSTSLGKSTNVGSSLITDSVSTLKHVQGAWLTTLREFSAKSGGFDEANSKNEWDKSVSESFSGTTSDDLGWDSVSSWSTGLTKEHFDGEAVGRRVGEGGDSPKSPQSSLVSGLQEFEDRIRELEAENRKSKDFVDKWGERMKEMSMLLKQVREPGARGSYLKDSEKAEMYRLHKENPEVYTVEKLAKDYRIMRQRVHAILWLKELEEEEEKKLGHPLDDSVELLLDTCPEFFKSHDLEFHVASLPYKPDFKVMPEGWDGTTRDLDEVHYEISKKEDDMLYKEFVEKMNFNKKKIAGEVFRHKYSRRRAADGWKFTIEKMGPRGKRGGDGGWKFVSLPDGSSRPLNEMEKMYVRRETPRHRRKILP

Homology

[Close]

BLAST of CmaCh16G011450.1 vs. ExPASy Swiss-Prot
Match: Q9LVA9 (Protein GAMETE CELL DEFECTIVE 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GCD1 PE=1 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 2.8e-125
Identity = 242/389 (62.21%), Postives = 285/389 (73.26%), Query Frame = 0


Query: 1   MQNLHHFICRLSSTSLGKSTNVGSSLITDSVSTLKHVQGAWLTTLREFSAKSGGFDEANS 60
           M NL   I R SS SL  ST     L+ ++ S  K +Q A   T R FSAKSG       
Sbjct: 1   MYNLSRIIYRFSSVSLNPSTRASGFLLENASS--KILQSA---TNRAFSAKSGSDGVGGD 60

Query: 61  KNEWDKSVSESFSGTTSDDLGWDSVSSWSTGLTKEHFDGEAVGRRVGEGGDSPKSPQS-- 120
            N W+ S   SF GT S DL WD+ S WSTGLTKEHFDG +VGR+      S  +  S  
Sbjct: 61  DNGWNISTGGSFGGTGSADLDWDNKSMWSTGLTKEHFDGVSVGRQKNAANPSSDNTPSDS 120

Query: 121 ------------SLVSGLQEFEDRIRELEAENRKSKDFVDKWGERMKEMSMLLKQVREPG 180
                       +LV+ + E++D ++E+E +NR+ + FVD   +RM E+S+LLKQV+EPG
Sbjct: 121 GDVMSKLGPKEVALVNEMNEYDDLLKEIEQDNRQGRAFVDGIKQRMMEISVLLKQVKEPG 180

Query: 181 ARGSYLKDSEKAEMYRLHKENPEVYTVEKLAKDYRIMRQRVHAILWLKELEEEEEKKLGH 240
           ARGSYLKDSEK EMYRLHKENPEVYT+E+LAKDYRIMRQRVHAIL+LKE EEEEE+KLG 
Sbjct: 181 ARGSYLKDSEKTEMYRLHKENPEVYTIERLAKDYRIMRQRVHAILFLKEDEEEEERKLGR 240

Query: 241 PLDDSVELLLDTCPEFFKSHDLEFHVASLPYKPDFKVMPEGWDGTTRDLDEVHYEISKKE 300
           PLDDSV+ LLD  PEFF SHD EFHVASL YKPDFKVMPEGWDGT +D+DEVHYEISKKE
Sbjct: 241 PLDDSVDRLLDEYPEFFISHDREFHVASLNYKPDFKVMPEGWDGTIKDMDEVHYEISKKE 300

Query: 301 DDMLYKEFVEKMNFNKKKIAGEVFRHKYSRRRAADGWKFTIEKMGPRGKRGGDGGWKFVS 360
           DDMLY+EFV +  FNK K  GEV  HKYSRRR+++GWK T+EK+G +GKRG  GGWKF+S
Sbjct: 301 DDMLYEEFVRRFEFNKMKWRGEVMCHKYSRRRSSEGWKITVEKLGAKGKRGAGGGWKFMS 360

Query: 361 LPDGSSRPLNEMEKMYVRRETPRHRRKIL 376
           LPDGSSRPLNEMEK+YV+RETP  RR I+
Sbjct: 361 LPDGSSRPLNEMEKVYVKRETPLRRRSII 384

[Close]

BLAST of CmaCh16G011450.1 vs. ExPASy Swiss-Prot
Match: Q8S2G4 (Protein GAMETE CELL DEFECTIVE 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GCD1 PE=2 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 6.3e-117
Identity = 212/306 (69.28%), Postives = 249/306 (81.37%), Query Frame = 0


Query: 73  SGTTSDDLGWDS-VSSWSTGLTKEHFDGE--AVGRRVGEGGDSPKSPQSSLVSGLQEFED 132
           S +  D  G D   SSWSTG+TKEHFDG   AVGR V      P SP+ + V  + E ++
Sbjct: 37  SSSPGDGQGGDEWGSSWSTGITKEHFDGSDAAVGRPV-TSPSKPVSPELAAVRAMDEEDE 96

Query: 133 RIRELEAENRKSKDFVDKWGERMKEMSMLLKQVREPGARGSYLKDSEKAEMYRLHKENPE 192
             R +E +NR++K +VD WG+RM+E   LLKQVREPG+RGSYLKDSEK EMYRLHKE+PE
Sbjct: 97  IFRAMERDNREAKAYVDSWGDRMRETCELLKQVREPGSRGSYLKDSEKQEMYRLHKEDPE 156

Query: 193 VYTVEKLAKDYRIMRQRVHAILWLKELEEEEEKKLGHPLDDSVELLLDTCPEFFKSHDLE 252
            YTVE+LAKD+R+MRQRVHAILWLKE+EEEEE+KLG PLDDSVE+LLD+CPEFF SHD E
Sbjct: 157 TYTVERLAKDFRVMRQRVHAILWLKEMEEEEERKLGKPLDDSVEVLLDSCPEFFNSHDRE 216

Query: 253 FHVASLPYKPDFKVMPEGWDGTTRDLDEVHYEISKKEDDMLYKEFVEKMNFNKKKIAGEV 312
           FHVASLPYKPDFKVMPEGWDGTTRD DEV YEIS KED MLY+EFV+++ FNKKK+AGEV
Sbjct: 217 FHVASLPYKPDFKVMPEGWDGTTRDPDEVLYEISMKEDQMLYEEFVQRLQFNKKKVAGEV 276

Query: 313 FRHKYSRRRAADGWKFTIEKMGPRGKRGGDGGWKFVSLPDGSSRPLNEMEKMYVRRETPR 372
             HKYSRRR  DGW + +EK+G + KRG  GGWKF SLPDGSSRPLN+MEKMYV+RETP+
Sbjct: 277 KCHKYSRRRPDDGWTYMVEKLGAQSKRGSGGGWKFASLPDGSSRPLNDMEKMYVKRETPK 336

Query: 373 HRRKIL 376
            RR+I+
Sbjct: 337 RRRRIM 341

[Close]

BLAST of CmaCh16G011450.1 vs. ExPASy Swiss-Prot
Match: A2WW22 (Protein GAMETE CELL DEFECTIVE 1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GCD1 PE=3 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 8.2e-117
Identity = 212/306 (69.28%), Postives = 249/306 (81.37%), Query Frame = 0


Query: 73  SGTTSDDLGWDS-VSSWSTGLTKEHFDGE--AVGRRVGEGGDSPKSPQSSLVSGLQEFED 132
           S +  D  G D   SSWSTG+TKEHFDG   AVGR V      P SP+ + V  + E ++
Sbjct: 37  SSSPGDGQGGDEWGSSWSTGITKEHFDGSDAAVGRPV-TSPSKPVSPELAAVRAMDEEDE 96

Query: 133 RIRELEAENRKSKDFVDKWGERMKEMSMLLKQVREPGARGSYLKDSEKAEMYRLHKENPE 192
             R +E +NR++K +VD WG+RM+E   LLKQVREPG+RGSYLKDSEK EMYRLHKE+PE
Sbjct: 97  IFRAMERDNREAKAYVDSWGDRMRETCELLKQVREPGSRGSYLKDSEKQEMYRLHKEDPE 156

Query: 193 VYTVEKLAKDYRIMRQRVHAILWLKELEEEEEKKLGHPLDDSVELLLDTCPEFFKSHDLE 252
            YTVE+LAKD+R+MRQRVHAILWLKE+EEEEE+KLG PLDDSVE+LLD+CPEFF SHD E
Sbjct: 157 TYTVERLAKDFRVMRQRVHAILWLKEMEEEEERKLGKPLDDSVEVLLDSCPEFFNSHDRE 216

Query: 253 FHVASLPYKPDFKVMPEGWDGTTRDLDEVHYEISKKEDDMLYKEFVEKMNFNKKKIAGEV 312
           FHVASLPYKPDFKVMPEGWDGTTRD DEV YEIS KED MLY+EFV+++ FNKKK+AGEV
Sbjct: 217 FHVASLPYKPDFKVMPEGWDGTTRDPDEVLYEISMKEDQMLYEEFVQRLQFNKKKVAGEV 276

Query: 313 FRHKYSRRRAADGWKFTIEKMGPRGKRGGDGGWKFVSLPDGSSRPLNEMEKMYVRRETPR 372
             HKYSRRR  DGW + +EK+G + KRG  GGWKF SLPDGSSRPLN+MEKMYV+RETP+
Sbjct: 277 KCHKYSRRRPDDGWTYMVEKLGVQSKRGSGGGWKFASLPDGSSRPLNDMEKMYVKRETPK 336

Query: 373 HRRKIL 376
            RR+I+
Sbjct: 337 RRRRIM 341

[Close]

BLAST of CmaCh16G011450.1 vs. TAIR 10
Match: AT5G62270.1 (BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 451.1 bits (1159), Expect = 9.0e-127
Identity = 243/388 (62.63%), Postives = 285/388 (73.45%), Query Frame = 0


Query: 1   MQNLHHFICRLSSTSLGKSTNVGSSLITDSVSTLKHVQGAWLTTLREFSAKSGGFDEANS 60
           M NL   I R SS SL  ST     L+ ++ S  K +Q A   T R FSAKSG       
Sbjct: 1   MYNLSRIIYRFSSVSLNPSTRASGFLLENASS--KILQSA---TNRAFSAKSGSDGVGGD 60

Query: 61  KNEWDKSVSESFSGTTSDDLGWDSVSSWSTGLTKEHFDGEAVGRRVGEGGDSPKSPQS-- 120
            N W+ S   SF GT S DL WD+ S WSTGLTKEHFDG +VGR+      S  +  S  
Sbjct: 61  DNGWNISTGGSFGGTGSADLDWDNKSMWSTGLTKEHFDGVSVGRQKNAANPSSDNTPSDS 120

Query: 121 ------------SLVSGLQEFEDRIRELEAENRKSKDFVDKWGERMKEMSMLLKQVREPG 180
                       +LV+ + E++D ++E+E +NR+ + FVD   +RM E+S+LLKQV+EPG
Sbjct: 121 GDVMSKLGPKEVALVNEMNEYDDLLKEIEQDNRQGRAFVDGIKQRMMEISVLLKQVKEPG 180

Query: 181 ARGSYLKDSEKAEMYRLHKENPEVYTVEKLAKDYRIMRQRVHAILWLKELEEEEEKKLGH 240
           ARGSYLKDSEK EMYRLHKENPEVYT+E+LAKDYRIMRQRVHAIL+LKE EEEEE+KLG 
Sbjct: 181 ARGSYLKDSEKTEMYRLHKENPEVYTIERLAKDYRIMRQRVHAILFLKEDEEEEERKLGR 240

Query: 241 PLDDSVELLLDTCPEFFKSHDLEFHVASLPYKPDFKVMPEGWDGTTRDLDEVHYEISKKE 300
           PLDDSV+ LLD  PEFF SHD EFHVASL YKPDFKVMPEGWDGT +D+DEVHYEISKKE
Sbjct: 241 PLDDSVDRLLDEYPEFFISHDREFHVASLNYKPDFKVMPEGWDGTIKDMDEVHYEISKKE 300

Query: 301 DDMLYKEFVEKMNFNKKKIAGEVFRHKYSRRRAADGWKFTIEKMGPRGKRGGDGGWKFVS 360
           DDMLY+EFV +  FNK K  GEV  HKYSRRR+++GWK T+EK+G +GKRG  GGWKF+S
Sbjct: 301 DDMLYEEFVRRFEFNKMKWRGEVMCHKYSRRRSSEGWKITVEKLGAKGKRGAGGGWKFMS 360

Query: 361 LPDGSSRPLNEMEKMYVRRETPRHRRKI 375
           LPDGSSRPLNEMEK+YV+RETP  RRKI
Sbjct: 361 LPDGSSRPLNEMEKVYVKRETPLRRRKI 383

[Close]

BLAST of CmaCh16G011450.1 vs. TAIR 10
Match: AT5G62270.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1). )

HSP 1 Score: 449.9 bits (1156), Expect = 2.0e-126
Identity = 242/389 (62.21%), Postives = 285/389 (73.26%), Query Frame = 0


Query: 1   MQNLHHFICRLSSTSLGKSTNVGSSLITDSVSTLKHVQGAWLTTLREFSAKSGGFDEANS 60
           M NL   I R SS SL  ST     L+ ++ S  K +Q A   T R FSAKSG       
Sbjct: 1   MYNLSRIIYRFSSVSLNPSTRASGFLLENASS--KILQSA---TNRAFSAKSGSDGVGGD 60

Query: 61  KNEWDKSVSESFSGTTSDDLGWDSVSSWSTGLTKEHFDGEAVGRRVGEGGDSPKSPQS-- 120
            N W+ S   SF GT S DL WD+ S WSTGLTKEHFDG +VGR+      S  +  S  
Sbjct: 61  DNGWNISTGGSFGGTGSADLDWDNKSMWSTGLTKEHFDGVSVGRQKNAANPSSDNTPSDS 120

Query: 121 ------------SLVSGLQEFEDRIRELEAENRKSKDFVDKWGERMKEMSMLLKQVREPG 180
                       +LV+ + E++D ++E+E +NR+ + FVD   +RM E+S+LLKQV+EPG
Sbjct: 121 GDVMSKLGPKEVALVNEMNEYDDLLKEIEQDNRQGRAFVDGIKQRMMEISVLLKQVKEPG 180

Query: 181 ARGSYLKDSEKAEMYRLHKENPEVYTVEKLAKDYRIMRQRVHAILWLKELEEEEEKKLGH 240
           ARGSYLKDSEK EMYRLHKENPEVYT+E+LAKDYRIMRQRVHAIL+LKE EEEEE+KLG 
Sbjct: 181 ARGSYLKDSEKTEMYRLHKENPEVYTIERLAKDYRIMRQRVHAILFLKEDEEEEERKLGR 240

Query: 241 PLDDSVELLLDTCPEFFKSHDLEFHVASLPYKPDFKVMPEGWDGTTRDLDEVHYEISKKE 300
           PLDDSV+ LLD  PEFF SHD EFHVASL YKPDFKVMPEGWDGT +D+DEVHYEISKKE
Sbjct: 241 PLDDSVDRLLDEYPEFFISHDREFHVASLNYKPDFKVMPEGWDGTIKDMDEVHYEISKKE 300

Query: 301 DDMLYKEFVEKMNFNKKKIAGEVFRHKYSRRRAADGWKFTIEKMGPRGKRGGDGGWKFVS 360
           DDMLY+EFV +  FNK K  GEV  HKYSRRR+++GWK T+EK+G +GKRG  GGWKF+S
Sbjct: 301 DDMLYEEFVRRFEFNKMKWRGEVMCHKYSRRRSSEGWKITVEKLGAKGKRGAGGGWKFMS 360

Query: 361 LPDGSSRPLNEMEKMYVRRETPRHRRKIL 376
           LPDGSSRPLNEMEK+YV+RETP  RR I+
Sbjct: 361 LPDGSSRPLNEMEKVYVKRETPLRRRSII 384

[Close]

BLAST of CmaCh16G011450.1 vs. TAIR 10
Match: AT2G02880.1 (mucin-related )

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-28
Identity = 79/232 (34.05%), Postives = 128/232 (55.17%), Query Frame = 0


Query: 131 IRELEAENRKSKDFVDKWGERMKEMSMLLKQVREPGARGSYLKDSEKAEMYRLHKENPEV 190
           I E++ E   +K FV+   E   E      +V +   +   + D E        + +  +
Sbjct: 83  IEEIDVE---AKAFVEDMNEHWDERRGKSGKVEKREEKKKEIGDGE-------DESSSSL 142

Query: 191 YTVEKLAKDYRIMRQRVHAILWLKELEEEEEKKL-----GHPLDDSVELLLDTCPEFFKS 250
           Y++E + KDYR+ +QRVHA LW+KE+E+ EE KL     G   DD ++ LLD+C E F S
Sbjct: 143 YSLETMKKDYRLKKQRVHASLWVKEIEKLEEAKLDDSGSGGGADD-IDRLLDSCSEIFDS 202

Query: 251 HDLEFHVASLPYKPDFKVMPEGWDGTTRDLDEVHYEISKKEDDMLYKEFVEKMNFNKKKI 310
            D +F    +    + K  P+GW+ T ++ D   +E+S++E+D+L +EF  +  F K +I
Sbjct: 203 VDHDFDKLEVSSGSELKNKPDGWESTAKEQDGNLWEMSQREEDILLQEFDRRTAFCKFQI 262

Query: 311 AGEVFRHKYSRRRAADGWKFTIEKMGPRGKRGGDGGWKFVSLPDGSSRPLNE 358
           A  + +H +SRRR  DGWK+ IE +GP  ++G     +  +L D S++P  E
Sbjct: 263 ASFIKQHIFSRRRPIDGWKYMIEVIGPNARKGKGSVSRLPALSDVSTQPFKE 303

The following BLAST results are available for this feature:

BLAST of CmaCh16G011450.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVA9	2.8e-125	62.21	Protein GAMETE CELL DEFECTIVE 1, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]
Q8S2G4	6.3e-117	69.28	Protein GAMETE CELL DEFECTIVE 1, mitochondrial OS=Oryza sativa subsp. japonica O...	[more]
A2WW22	8.2e-117	69.28	Protein GAMETE CELL DEFECTIVE 1, mitochondrial OS=Oryza sativa subsp. indica OX=...	[more]

BLAST of CmaCh16G011450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62270.1	9.0e-127	62.63	BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Ha...	[more]
AT5G62270.2	2.0e-126	62.21	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT2G02880.1	2.5e-28	34.05	mucin-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 117..144
None	No IPR available	PFAM	PF12298	Bot1p	coord: 171..279 e-value: 1.5E-7 score: 31.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..122
None	No IPR available	PANTHER	PTHR35476	MUCIN-LIKE PROTEIN	coord: 1..376
None	No IPR available	PANTHER	PTHR35476:SF3	GB\|AAC32909.1	coord: 1..376

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh16G011450	CmaCh16G011450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G011450.1:exon:2032	CmaCh16G011450.1:exon:2032	exon
CmaCh16G011450.1:exon:2031	CmaCh16G011450.1:exon:2031	exon
CmaCh16G011450.1:exon:2030	CmaCh16G011450.1:exon:2030	exon
CmaCh16G011450.1:exon:2029	CmaCh16G011450.1:exon:2029	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G011450.1:three_prime_utr	CmaCh16G011450.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G011450.1:cds	CmaCh16G011450.1:cds_3	CDS
CmaCh16G011450.1:cds	CmaCh16G011450.1:cds_2	CDS
CmaCh16G011450.1:cds	CmaCh16G011450.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G011450.1:five_prime_utr	CmaCh16G011450.1:five_prime_utr_2	five_prime_UTR
CmaCh16G011450.1:five_prime_utr	CmaCh16G011450.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh16G011450.1	CmaCh16G011450.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007154	cell communication
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010342	endosperm cellularization
biological_process	GO:0009960	endosperm development
biological_process	GO:0007006	mitochondrial membrane organization
biological_process	GO:0051647	nucleus localization
biological_process	GO:0009555	pollen development
biological_process	GO:0009846	pollen germination
biological_process	GO:0048868	pollen tube development
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0043067	regulation of programmed cell death
biological_process	GO:0010581	regulation of starch biosynthetic process
biological_process	GO:0007033	vacuole organization
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0010333	terpene synthase activity