CmaCh16G011320.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G011320.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr16: 8709940 .. 8711611 (+)
Sequence length718
RNA-Seq ExpressionCmaCh16G011320.1
SyntenyCmaCh16G011320.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATATGCGAATTGATTATGATGCATAAAGAAATAGATTGGAAGTTTATGGAGCCTTCTGATTATGGTGCAGTGAATCGATTTCAAGTACATTACTAATCATCTCATAGTAGTCCTAAAATGTCGATGATATTCATATTTCTATCACAGTTAGGAACTAGTGGTCTCTGTCAGTGGTGGGTTGGCGCCACTTTTAATTTCCTTATGAAAAGTTTGAGTCACACTTTCTCATTTAGTAGTAATCAATTCCTGAATCTTTAAATCTTAGGAGTTTCTCTTAGAATACTTTTTACTTGAAAATAAACCTCTAAATTTAAGAGAATGGAATGACAAATTAGGTTTGCCCATCGATCAGCTTCACTCTAGTTATCATCATCCTGAAAAAGAAATTATCTCGACAAGAGTCTGTTCTATTCTCATGGAGATTGTTGCATTGGAGTAAAGGGATGATCCAGTCCAGTCAATAGTCTTAGTTTATTGTATATCCGTTATGTGAACAAAGCTTCGTATGTTCGGTGATCTGCATCATTTTTGTTTTCATCATTTTTGTGACTCACAAATAATCTTATGATTGTTCTTATCATTCAACCCATTAATTTCTTTTATCAAATAATCTATATGACATAACTTCTCATTGCCCCAGATGCAATTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGGTGGGTCAGTCACTCTATGCTTCACTAATCTAGAAATGTCACTTTTTGAGTGATGTGTAAAGGTCCGTAGATGTTAGTTCTGGGTACCTTTGATTTACCTACTGTAAATGTAATGAAACCTTTACTCCTTTATTCCCGTGCCAATTTCTGTATACCTCGATTAATCTTACCGAACAACTATCTAACTAAAGAAAAATCTATATTACCTGAGGATCATGTATCAGTTGGCATTGTTGACTCTACTGTATGGTTTTCTTTGCAACTGTAGAACTAGATAGCTGCATCAATTGCATTGAATGAGAGGATGCGAGTCATATTGCAAGACTTCATTCCCAGTAGAATTTCTACCGATGTTCGTAGTCTGTTTTTTCTTATTTATTTGTATTCTGTGGCTGCAGAGCTGGGCTTATCAGTTCCAAGGTGACTTCTTTGGGAAGATTGTTGCAGTGACAAGAGGATGTCGGCCATGGTCTTGTGGATTTCATTTACGTACTGTGATCATTACTGCTCAATTTGGTTAACTAGTTTTGATTCTTCCAGACGGCAGAATGTGTTGAAATAAGAATATAGTGATTCTAGTGCTTACCGGCAACTCAGGACATCATATTTTCGCCTTTGTTGCCATTGTTGTTTGATATTTCTCATACAATAGACATCATACTATTTTCCTTTGTTTGTGGTATAGTATTTCTTGTAGACAGATGGGGGGCTGTTTTGCTTACTCCTAGACAAAGCAGCCAACAAAATAAGGCATGCCATATTTTGTACTATGAGCTTAAGACATTCTAACACGAAAGGTTTGTTGGGAAATAATCTTGTACACGAAGAGATCGTTGGCCGTTAAATTGTCATTCATGATCTTAAATTTGTTGCCAATATGATTTAGGCATATGTTTTTTGTAACGGCTCAAGCCTATTGCTAGCCGTTATTGTCATCTTTGGGCTTTCTTTCAAGATTTTTTTTTTGTAATGGCTCAAGCCCAC

mRNA sequence

ATGTCAATATGCGAATTGATTATGATGCATAAAGAAATAGATTGGAAGTTTATGGAGCCTTCTGATTATGGTGCAGTGAATCGATTTCAAATGCAATTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGAGCTGGGCTTATCAGTTCCAAGGTGACTTCTTTGGGAAGATTGTTGCAGTGACAAGAGGATGTCGGCCATGGTCTTGTGGATTTCATTTACGTACTGTGATCATTACTGCTCAATTTGGTTAACTAGTTTTGATTCTTCCAGACGGCAGAATGTGTTGAAATAAGAATATAGTGATTCTAGTGCTTACCGGCAACTCAGGACATCATATTTTCGCCTTTGTTGCCATTGTTGTTTGATATTTCTCATACAATAGACATCATACTATTTTCCTTTGTTTGTGGTATAGTATTTCTTGTAGACAGATGGGGGGCTGTTTTGCTTACTCCTAGACAAAGCAGCCAACAAAATAAGGCATGCCATATTTTGTACTATGAGCTTAAGACATTCTAACACGAAAGGTTTGTTGGGAAATAATCTTGTACACGAAGAGATCGTTGGCCGTTAAATTGTCATTCATGATCTTAAATTTGTTGCCAATATGATTTAGGCATATGTTTTTTGTAACGGCTCAAGCCTATTGCTAGCCGTTATTGTCATCTTTGGGCTTTCTTTCAAGATTTTTTTTTTGTAATGGCTCAAGCCCAC

Coding sequence (CDS)

ATGTCAATATGCGAATTGATTATGATGCATAAAGAAATAGATTGGAAGTTTATGGAGCCTTCTGATTATGGTGCAGTGAATCGATTTCAAATGCAATTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGAGCTGGGCTTATCAGTTCCAAGGTGACTTCTTTGGGAAGATTGTTGCAGTGACAAGAGGATGTCGGCCATGGTCTTGTGGATTTCATTTACGTACTGTGATCATTACTGCTCAATTTGGTTAA

Protein sequence

MSICELIMMHKEIDWKFMEPSDYGAVNRFQMQLMVRETYLLFLKSWAYQFQGDFFGKIVAVTRGCRPWSCGFHLRTVIITAQFG
Homology
The following BLAST results are available for this feature:
BLAST of CmaCh16G011320.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh16G011320.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh16G011320CmaCh16G011320gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G011320.1:exon:1304CmaCh16G011320.1:exon:1304exon
CmaCh16G011320.1:exon:1305CmaCh16G011320.1:exon:1305exon
CmaCh16G011320.1:exon:1306CmaCh16G011320.1:exon:1306exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G011320.1:cdsCmaCh16G011320.1:cdsCDS
CmaCh16G011320.1:cdsCmaCh16G011320.1:cds_2CDS
CmaCh16G011320.1:cdsCmaCh16G011320.1:cds_3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G011320.1:three_prime_utrCmaCh16G011320.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh16G011320.1CmaCh16G011320.1-proteinpolypeptide