CmaCh16G009510.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G009510.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptioncoiled-coil domain-containing protein 22 isoform X1
LocationCma_Chr16: 7361743 .. 7365579 (+)
Sequence length1698
RNA-Seq ExpressionCmaCh16G009510.1
SyntenyCmaCh16G009510.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGTCTGAAGCGACAAGGGAAACTGTAAAAATACGAACAGCGGCAATGGAGGAATCTCAGGAAATCCTACTGAATTCCCTCCAAAAATCTGGTGTTTCAGTCCCTCCAGATGTTTCCTCGATTCGGAAATTAACTCCTCCGCTTTTGTTCTCGATCTGTGCTCAAGTCTTGAATCGAATACATGGCCAAACTCAAATCCCCTACGCCACTTCTCTGCCGGACTCCGTCGCTGATCAGTTCAAGATATGTACTGAAATCGCTTCCGCTATTAAGGATCTGGGTTACATAGGAGATATGAGCTTCCACAAGGTATGTCCCCTTTTCTGTCTGCTTGAATTTCGGAAAATTTTGGGCGATTGCGAGAAATCTGTTTGCAAGTACGAACATACTGATTCTGTTGTTGTTTATATTTGGTTCATTTATGAATTTACTCGATTTTTGTAGACATGCATTGTGAGCGTTCTGTTTCTATTAATGGTGATCAAAGTATACCCTAAAGTTTATGAGTACTGGAAACTTTTCAGTGTCTAGGAACTAAATAGGATGTGTTTAAAAGGAGAGTCACAAATTTATAGCTGACGTCTGTATTTCTTTTGACCACATAACTTTTTGGACATTAGCAAAAGCTAAGGCATTTGTTTCGGATATCCATTTGCTGTTGTACTTAGAAACAGACTACATGTGTTGCTTACAACAGTTCTTGTATCCATCTGAAGAGGACTTGTATAAGTTGATAAGATTCTTGGTGGAGAGACTTCCTGAAGTTTCTGATGGAAAATCCAAGGTTTTGGAAGATGGTGATGGTAGAAAAGAAACGAAAGCTGACACTCTCAAATGCCACTATGTGTCGGGCCAATCAGACGCTATCGACACTGCTGATTCCGTTTTTACCCATCAGAAGGTTGAGAACAAACTTTCCGATCTTAATATTATTGCTGAAGAGACAAAATCTTCAGATTCCATTGTCGGTCGATTATCTGATTCCGGTGAAACAGCTATGGTTGATAACCTTGTTAATGCTCCCAAATATCAGTCTGAGGTTTCAGGAAATGAATCAGTTGCAGTGCAAGGGAATAATGGACAAGTATCAATTTCCAGACATGAAGTTAGTTCTTACATTCAAAAGAATGATGAAGTAAGTTCTTCTTATGGCTCCTAACTTCAAACAATTATTAAAATCTGTTGTGTATAAGAGAAAAGAATGAAATGGTCAGCCCCTTGGGAAAAGGTTATTTGATCAGATGATATAAAGAATATTGTATATCTTCTATTCTTGTTTTAAATGAGAATTGAGGCTGAGAAATTTCAGGATCAAGAGATCAGACCATTGGAAGAGGTCAGTACAAAGGCTTCTGAATTAGAGCATCTTCTTGTCGAGTTAGAAAGGTTGAAGGCAGCGACTGGAATTGTATTTGATGATAATCGCTCGATTGAAGTCCATCTTCAGGAACTGGAGGAGCAAATCAGTTCTAGAAAGCTGAATCTTCTTGCAGCGAAGTCGGGGTGGTGGGTCATCGTTTTAGTTTGATATCTGGATTAATTTTTATACTGCTTCTGCATTTTTAATTTAAAAACCCAATTTCAAAGAGAAGTTGAGTCCTAATACAAATATATAGATTTCATTTACTTTTTCTTTATCATTGAACTCTACAGGGATGCAGAGAAGGAGCTTTTGGAAAATAAAAGGCGAAATCTTCAAGAATCACTATGTGCAAGTAATCCGAAGGCTCCAGAAAAGCTGCAAAAATTGAGAGAGTTTGAATTGGAAAAGCAGCTCATCGAGTCGGAAATCAGGAGGCGGTATGCTACTTCTTTGAATATTAAATAGGAAGTGAATATGAATCCTTACTGAAATCTATGAAATATTCTCAGTATATCTAGTTATATTTTTCAAAATGAAACTATTGTCACAGGAAACTGATGTTTTAGATGCGAAGTAATTTGGAGATACCCTCCTTAGTCTTAGGTTTAGAATGAATTTTGGATTACTTTTGTAGGGTGAAAAGTGCTTTCAGCTGATCAAAATCACTTTCCAAAATTTTGTTGAATAGAGTTGGGCGAGTTCACTTGAACTCTTTATTAACACCAATTGAGAAGAGATTAGATGACACTCTATAGAAACTACTTGCACTCTGTGCTTTGAATTTCTTTTGATGAAGACGTTGGTAGGGTGGAGGAGTATTTAGCAGAGGGTAGACAATTTATTCCTAAAATATCTAACAATTTATTCCTAAAATACCTAAACCATTTTTCTAAAATACATAGACAATGGGCTCATACAACTATTGGGCTTAACCCTATTGGGCTAGTGATATATTTTAACACTCCCCCGTAGCACTAGTCCTCATTCGCTGCACCATGTTGAGTTGACAGCTAAAGCTCTCATATATGCCAGGATTCGGCCCTTTTGTAAACAAGTGTTGCCCACTATTTTGTTACACAAATATAAGTGCTCTTAAAAATTGTAATAGTCCTTGAAAGCACTTAGTATCTCAAGAGGAAGTACTTAATTGGTTTCTGTTCCAAAACTGCATACGGAAGAAGTTCTCCAATTAAACTTTTTTAATAAAAATCATCCGGAACTTACTATCAATTATCAATACCTTAATTACTTCTTAATCATTTGTGGTTTCTTGAGAAAGCTAGGTTTTGAAAATCATTATCAACCTGTCTTTATATAAAGTGATATCATAATTAGGTCTTTTCCTTTTGGGGTGGGTGGGTTTGTCATATTAAATTTGATGTTACTGTATCAAAGAGTAATCTGTACCTTTGTGGAGAGTTTATGGGGATCTATTGCGTGTTATGTTAGCATTTATATTCAAAAGTCACTACCCTGTTTCTCTTGTAATCTTGACACCTTTCATCATTTTTACTTTTTGGGTGGGTGGGGCAACTCGAAGAAAACTTCCTAAACATGATATGCAACGCAAAAATTTATAAGCAGTGGGGCGTCCTGTTGGCTTGTTATTATCTCTTGCTTATGTCTAACGATATTGATTTTTCCTCAAATATTGTCACACATCCTTCAGGGAGGAAGGAAATTATAATCTCTCAACAGAGCTTAAGAAGCAGCCAAAACAGGCATCGAGACGATCCTACATCGATAGGGTGAAGGAGATCACAAAAAATAGTCGGAAACAAGATGCTGACATTGACCGAATCCTTAAAGAAACTAGAGAGCTTCAGCTAGAAAGTAACAATATTCAAGAACGCCTCCATAGAACCTACGCAATTGTGGATGAGCTAGTTCTCAGGTATGCACCATAGAACTAGTGAGAACTGAAACAGAACTATTACATCATTGCTTTAAGTGGTATTAATCAGTTGGTTGACAATGATGTAGTAATAGCGTCCCATATCTTGCCCCTCATTTATGTTTCATACTCGACCGAAAAAAATTGACCTTTTATCTTGCTTAGAAAACTAGCTGAACAGATTCATATCCTGTGTAGGGAAGCAAAAAAAGAAGGCATAGGCAAGAAAGCACACAAACTCCTGACTAGTATCCATGAGAATTTCGGAGAGATCTCGAACAAAATCCTGTCTACGGATAGATTAAGAAGAGAAACTGCAGAATACGAGAAGAAGATAGCGGCCTCAGCATCCCGAAGTTTAGATTTTAACAAACTACAAGCTGATCTGGATGCTATCAGGAAGGAAAATAGTTGCCTAGAGCAAAATCTCTGCCATAAAAAACCCATTGACCAAATGTAGAATGTTTTCTGGATTTCTTTTGTTTAGTTGTAAATCAATCATGCTTATTGCAACAATTACATTCTAGTGCAAAGGAGAAACAATTCAGTTCAAATGACATCATCTGCTATTTACTTAAA

mRNA sequence

GAAGTCTGAAGCGACAAGGGAAACTGTAAAAATACGAACAGCGGCAATGGAGGAATCTCAGGAAATCCTACTGAATTCCCTCCAAAAATCTGGTGTTTCAGTCCCTCCAGATGTTTCCTCGATTCGGAAATTAACTCCTCCGCTTTTGTTCTCGATCTGTGCTCAAGTCTTGAATCGAATACATGGCCAAACTCAAATCCCCTACGCCACTTCTCTGCCGGACTCCGTCGCTGATCAGTTCAAGATATGTACTGAAATCGCTTCCGCTATTAAGGATCTGGGTTACATAGGAGATATGAGCTTCCACAAGTTCTTGTATCCATCTGAAGAGGACTTGTATAAGTTGATAAGATTCTTGGTGGAGAGACTTCCTGAAGTTTCTGATGGAAAATCCAAGGTTTTGGAAGATGGTGATGGTAGAAAAGAAACGAAAGCTGACACTCTCAAATGCCACTATGTGTCGGGCCAATCAGACGCTATCGACACTGCTGATTCCGTTTTTACCCATCAGAAGGTTGAGAACAAACTTTCCGATCTTAATATTATTGCTGAAGAGACAAAATCTTCAGATTCCATTGTCGGTCGATTATCTGATTCCGGTGAAACAGCTATGGTTGATAACCTTGTTAATGCTCCCAAATATCAGTCTGAGGTTTCAGGAAATGAATCAGTTGCAGTGCAAGGGAATAATGGACAAGTATCAATTTCCAGACATGAAGTTAGTTCTTACATTCAAAAGAATGATGAAGATCAAGAGATCAGACCATTGGAAGAGGTCAGTACAAAGGCTTCTGAATTAGAGCATCTTCTTGTCGAGTTAGAAAGGTTGAAGGCAGCGACTGGAATTGTATTTGATGATAATCGCTCGATTGAAGTCCATCTTCAGGAACTGGAGGAGCAAATCAGTTCTAGAAAGCTGAATCTTCTTGCAGCGAAGTCGGGGTGGGATGCAGAGAAGGAGCTTTTGGAAAATAAAAGGCGAAATCTTCAAGAATCACTATGTGCAAGTAATCCGAAGGCTCCAGAAAAGCTGCAAAAATTGAGAGAGTTTGAATTGGAAAAGCAGCTCATCGAGTCGGAAATCAGGAGGCGGGAGGAAGGAAATTATAATCTCTCAACAGAGCTTAAGAAGCAGCCAAAACAGGCATCGAGACGATCCTACATCGATAGGGTGAAGGAGATCACAAAAAATAGTCGGAAACAAGATGCTGACATTGACCGAATCCTTAAAGAAACTAGAGAGCTTCAGCTAGAAAGTAACAATATTCAAGAACGCCTCCATAGAACCTACGCAATTGTGGATGAGCTAGTTCTCAGGGAAGCAAAAAAAGAAGGCATAGGCAAGAAAGCACACAAACTCCTGACTAGTATCCATGAGAATTTCGGAGAGATCTCGAACAAAATCCTGTCTACGGATAGATTAAGAAGAGAAACTGCAGAATACGAGAAGAAGATAGCGGCCTCAGCATCCCGAAGTTTAGATTTTAACAAACTACAAGCTGATCTGGATGCTATCAGGAAGGAAAATAGTTGCCTAGAGCAAAATCTCTGCCATAAAAAACCCATTGACCAAATGTAGAATGTTTTCTGGATTTCTTTTGTTTAGTTGTAAATCAATCATGCTTATTGCAACAATTACATTCTAGTGCAAAGGAGAAACAATTCAGTTCAAATGACATCATCTGCTATTTACTTAAA

Coding sequence (CDS)

ATGGAGGAATCTCAGGAAATCCTACTGAATTCCCTCCAAAAATCTGGTGTTTCAGTCCCTCCAGATGTTTCCTCGATTCGGAAATTAACTCCTCCGCTTTTGTTCTCGATCTGTGCTCAAGTCTTGAATCGAATACATGGCCAAACTCAAATCCCCTACGCCACTTCTCTGCCGGACTCCGTCGCTGATCAGTTCAAGATATGTACTGAAATCGCTTCCGCTATTAAGGATCTGGGTTACATAGGAGATATGAGCTTCCACAAGTTCTTGTATCCATCTGAAGAGGACTTGTATAAGTTGATAAGATTCTTGGTGGAGAGACTTCCTGAAGTTTCTGATGGAAAATCCAAGGTTTTGGAAGATGGTGATGGTAGAAAAGAAACGAAAGCTGACACTCTCAAATGCCACTATGTGTCGGGCCAATCAGACGCTATCGACACTGCTGATTCCGTTTTTACCCATCAGAAGGTTGAGAACAAACTTTCCGATCTTAATATTATTGCTGAAGAGACAAAATCTTCAGATTCCATTGTCGGTCGATTATCTGATTCCGGTGAAACAGCTATGGTTGATAACCTTGTTAATGCTCCCAAATATCAGTCTGAGGTTTCAGGAAATGAATCAGTTGCAGTGCAAGGGAATAATGGACAAGTATCAATTTCCAGACATGAAGTTAGTTCTTACATTCAAAAGAATGATGAAGATCAAGAGATCAGACCATTGGAAGAGGTCAGTACAAAGGCTTCTGAATTAGAGCATCTTCTTGTCGAGTTAGAAAGGTTGAAGGCAGCGACTGGAATTGTATTTGATGATAATCGCTCGATTGAAGTCCATCTTCAGGAACTGGAGGAGCAAATCAGTTCTAGAAAGCTGAATCTTCTTGCAGCGAAGTCGGGGTGGGATGCAGAGAAGGAGCTTTTGGAAAATAAAAGGCGAAATCTTCAAGAATCACTATGTGCAAGTAATCCGAAGGCTCCAGAAAAGCTGCAAAAATTGAGAGAGTTTGAATTGGAAAAGCAGCTCATCGAGTCGGAAATCAGGAGGCGGGAGGAAGGAAATTATAATCTCTCAACAGAGCTTAAGAAGCAGCCAAAACAGGCATCGAGACGATCCTACATCGATAGGGTGAAGGAGATCACAAAAAATAGTCGGAAACAAGATGCTGACATTGACCGAATCCTTAAAGAAACTAGAGAGCTTCAGCTAGAAAGTAACAATATTCAAGAACGCCTCCATAGAACCTACGCAATTGTGGATGAGCTAGTTCTCAGGGAAGCAAAAAAAGAAGGCATAGGCAAGAAAGCACACAAACTCCTGACTAGTATCCATGAGAATTTCGGAGAGATCTCGAACAAAATCCTGTCTACGGATAGATTAAGAAGAGAAACTGCAGAATACGAGAAGAAGATAGCGGCCTCAGCATCCCGAAGTTTAGATTTTAACAAACTACAAGCTGATCTGGATGCTATCAGGAAGGAAAATAGTTGCCTAGAGCAAAATCTCTGCCATAAAAAACCCATTGACCAAATGTAG

Protein sequence

MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDSVADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSDGKSKVLEDGDGRKETKADTLKCHYVSGQSDAIDTADSVFTHQKVENKLSDLNIIAEETKSSDSIVGRLSDSGETAMVDNLVNAPKYQSEVSGNESVAVQGNNGQVSISRHEVSSYIQKNDEDQEIRPLEEVSTKASELEHLLVELERLKAATGIVFDDNRSIEVHLQELEEQISSRKLNLLAAKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREEGNYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLHRTYAIVDELVLREAKKEGIGKKAHKLLTSIHENFGEISNKILSTDRLRRETAEYEKKIAASASRSLDFNKLQADLDAIRKENSCLEQNLCHKKPIDQM
Homology
BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match: B0WTU5 (Coiled-coil domain-containing protein 22 homolog OS=Culex quinquefasciatus OX=7176 GN=CPIJ010681 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-28
Identity = 131/571 (22.94%), Postives = 250/571 (43.78%), Query Frame = 0

Query: 1   MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
           M+E   I+L+SL++ G ++  +V+S+ + +P LL  + ++ +  I     +P   +LP  
Sbjct: 1   MDEIDNIILHSLRQIGCTLDDEVTSLDEFSPTLLVQVVSKCITLIDSSLDLP--RTLPPG 60

Query: 61  VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSDGK----- 120
           +A +F     +A A + +GY  D+ +  FLY +  ++ +++ FL+ERLP+ S  K     
Sbjct: 61  MAQRFTATASLAEACRTIGYRRDIGYQTFLYSNVAEVRRVLMFLIERLPKESADKAAGTG 120

Query: 121 ----------SKVLEDGDGRKETKADTLKCHYVSGQSDAIDTADSVFTHQKVENKLSDLN 180
                     S++      + +       C   +G S +   A   F  +K+        
Sbjct: 121 QPLDVTTELESRICASLQSQLQAPWMPEFCRTAAGPSSS-QIAFRRFVPRKLNIPFVTQG 180

Query: 181 IIAEETKSSDSIVGRLSDSGETAMVDNLVNAPKYQSEVSGNESVAVQGNNGQVSISRHEV 240
            IA E K   S    L    E + + +++ A     + SG     V  +  +V      +
Sbjct: 181 DIAAEVKEFWSRQASLDTLDEDSFIPSVIAANDGALKASGGAIDEV--DRIKVCSPVDRL 240

Query: 241 SSYIQKNDEDQEIRPLEEVSTK----------------------ASELEHLLVELERL-- 300
             +   +++   + P+ +V+ +                        E++ + VE+ER   
Sbjct: 241 QRFYTSSEQKSSVVPVGKVAVEEKLDALAIVEAARPGKTPLESLQEEIDQIRVEIERAVG 300

Query: 301 -------------------KAATGIVFDDNRSIE-VHLQELEEQISSRKLNLLAAKSG-- 360
                              +AA G + D+ +  E  H+   + +++ RKL  +    G  
Sbjct: 301 EGTGLEGERMEVVELCEVQRAAVGKLKDEKKIKERTHILLEDPEVNVRKLQGIIGAGGER 360

Query: 361 -------WDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREEG 420
                  WD  +  LE +    +        ++ + + ++     + + +  +++ +   
Sbjct: 361 MKKLQDQWDVHRIPLEQELEGYRVKHSDKLSQSQQIVDQIEATRHKSEEVMMDLQTKSAM 420

Query: 421 NYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLH 480
           +  L  EL+K  +  SR +Y  R+ EI  N RKQ  DID+IL++TR LQ E N I  +L 
Sbjct: 421 HARLQKELEKLNRTVSRTAYTSRILEIVGNIRKQKTDIDKILQDTRTLQKEINTITGQLD 480

Query: 481 RTYAIVDELVLREAKKEGIGKKAHKLLTSIHENFGEISNKILSTDRLRRETAEYEKKIAA 502
           R + + D+L+ R AKK+   KKA+KLL ++H +  E+   +  T  ++RE  + E +I  
Sbjct: 481 RQFTVTDDLIFRNAKKDEHAKKAYKLLVTLHSDCAELMALVQETGAVKREIRDLEDQIET 540

BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match: P86182 (Coiled-coil domain-containing protein 22 OS=Rattus norvegicus OX=10116 GN=Ccdc22 PE=1 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 4.4e-28
Identity = 154/624 (24.68%), Postives = 261/624 (41.83%), Query Frame = 0

Query: 1   MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
           MEE+  IL++SL+++G +VPP+V ++R  T  L+     + L  I+       +  LP +
Sbjct: 1   MEEADRILIHSLRQAGTAVPPEVQTLRAFTTELVVEAVVRCLRVINPDVGSGLSHLLPPA 60

Query: 61  VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLP----EVSD--- 120
           ++ +F++   +A A  DLGY  ++ +  FLYPSE DL  L+ FL ERLP    E +D   
Sbjct: 61  MSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPTDASEDADQPA 120

Query: 121 GKSKVLEDGDGR------------------------------------------------ 180
           G S +     G                                                 
Sbjct: 121 GDSAIFLRAIGSQIRDQLALPWVPPLLRTPKVQRLQGSALQQAFHSSRLVLPELNCRGEP 180

Query: 181 KETKADTLKCHYVSGQSDAIDTADSVFTHQKVE-------------------NKL-SDLN 240
           +E +A  L     S     +  A S+  H  ++                   ++L S  +
Sbjct: 181 REFQASPLLLPAPSQVPQLLGRAASLLEHHAIQLCQHVNRDCPGDEDRVRWASRLPSQED 240

Query: 241 IIAEETKSSDSIVGRLSDS----GETAMVDNL------------VNAPKYQSEVSGNESV 300
             A + +    ++  L  S    G    V +L               PK  S  + +E  
Sbjct: 241 PRAPQQRLHKQLIEHLRQSWGPLGAPTQVRDLGEMLQAWGAKAMTGVPK-GSRFTHSEKF 300

Query: 301 ---------AVQGNNGQVSISRHEVSSYIQKNDEDQEIRP--------LEEVSTKASELE 360
                    A Q  +   +  R E  +   + +E + +R         +EEV      L 
Sbjct: 301 TFHLEPQVQAAQVADIPAASQRPEQDTRAAQEEELESLREQLASVNHNIEEVEANMKSLG 360

Query: 361 HLLVELE-----------------RLKAATGIVFDDNRSIEVHLQELEEQISSRKLNLLA 420
             LV++E                 RLK+ T  +  D  +   +L +L+  + S    L+ 
Sbjct: 361 MNLVQVETECRQSELSVAEQEQALRLKSRTVELLPDGAA---NLTKLQLVVESSAQRLIH 420

Query: 421 AKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREEGNYN 480
             S W+  +  L  + R+L++       ++  +L +++E     +    E RR+EE    
Sbjct: 421 LASQWEKHRVPLLAEYRHLRKLQDCRELESSRRLVEIQELHQSVRAAAEEARRKEEVYKQ 480

Query: 481 LSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLHRTY 498
           L +EL+  PK  SR +Y  R+ EI  N RKQ  +I +IL +T+ELQ E N++  +L RT+
Sbjct: 481 LVSELETLPKDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTF 540

BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match: O60826 (Coiled-coil domain-containing protein 22 OS=Homo sapiens OX=9606 GN=CCDC22 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.7e-28
Identity = 161/629 (25.60%), Postives = 254/629 (40.38%), Query Frame = 0

Query: 1   MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
           MEE+  IL++SL+++G +VPPDV ++R  T  L+     + L  I+       +  LP +
Sbjct: 1   MEEADRILIHSLRQAGTAVPPDVQTLRAFTTELVVEAVVRCLRVINPAVGSGLSPLLPLA 60

Query: 61  VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSDGKSKVLE 120
           ++ +F++   +A A  DLGY  ++ +  FLYPSE DL  L+ FL ERLP      +   E
Sbjct: 61  MSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLP------TDASE 120

Query: 121 DGDGRKETKADTLKCHYVSGQSDAIDTADSVFTHQKVENKLSDL--NIIAEETKSSDSIV 180
           D D      A  L+   +  Q         V  H +   KL  L  + + +   +S  +V
Sbjct: 121 DADQPAGDSAILLRA--IGSQIRDQLALPWVPPHLRTP-KLQHLQGSALQKPFHASRLVV 180

Query: 181 GRLSDSGE--------------------TAMVDNLVNAPKYQ------------------ 240
             LS  GE                       V +L+     Q                  
Sbjct: 181 PELSSRGEPREFQASPLLLPVPTQVPQPVGRVASLLEHHALQLCQQTGRDRPGDEDWVHR 240

Query: 241 -SEVSGNESVAVQGNNGQVSISRHEVSSY------------------------------- 300
            S +   E    Q    Q  ++ H   S+                               
Sbjct: 241 TSRLPPQEDTRAQRQRLQKQLTEHLRQSWGLLGAPIQARDLGELLQAWGAGAKTGAPKGS 300

Query: 301 ------------------IQKNDEDQEIRPLEEVSTKA--SELEHLLVELERLKAATGIV 360
                              Q +D     R  E+V+  A   ELE L  +LE +  +   V
Sbjct: 301 RFTHSEKFTFHLEPQAQATQVSDVPATSRRPEQVTWAAQEQELESLREQLEGVNRSIEEV 360

Query: 361 FDDNRSIEVHLQELEEQISSRKLNLLAAKSGWDAEK---ELLENKRRNLQE-SLCASNP- 420
             D +++ V   + E +    KL+    +     +    ELL +   NL +  L   N  
Sbjct: 361 EADMKTLGVSFVQAESECRHSKLSTAEREQALRLKSRAVELLPDGTANLAKLQLVVENSA 420

Query: 421 -------------KAP--------EKLQKLREFELEKQLIE------------SEIRRRE 480
                        + P         KLQ  RE E  ++L E             E RR+E
Sbjct: 421 QRVIHLAGQWEKHRVPLLAEYRHLRKLQDCRELESSRRLAEIQELHQSVRAAAEEARRKE 480

Query: 481 EGNYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQER 498
           E    L +EL+  P+  SR +Y  R+ EI  N RKQ  +I +IL +T+ELQ E N++  +
Sbjct: 481 EVYKQLMSELETLPRDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGK 540

BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match: Q9JIG7 (Coiled-coil domain-containing protein 22 OS=Mus musculus OX=10090 GN=Ccdc22 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 7.4e-28
Identity = 153/624 (24.52%), Postives = 260/624 (41.67%), Query Frame = 0

Query: 1   MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
           MEE+  IL++SL+++G +VPP+V ++R  T  L+     + L  I+       +  LP +
Sbjct: 1   MEEADRILIHSLRQAGTAVPPEVQTLRAFTTELVVEAVVRCLRVINPDVGSGLSHLLPPA 60

Query: 61  VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLP----EVSD--- 120
           ++ +F++   +A A  DLGY  ++ +  FLYPSE DL  L+ FL ERLP    E +D   
Sbjct: 61  MSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPSDASEDADQPA 120

Query: 121 GKSKVLEDGDGRK----------------------------------------------- 180
           G S +     G +                                               
Sbjct: 121 GDSAIFLRAIGSQIRDQLALPWVPPLLRTPKVQRLQGSALQQPFHSSRLVLPELNSSGEL 180

Query: 181 -------------------ETKADTLKCHYVS-----------GQSDAIDTA-------D 240
                              + +A +L  H+ S           G  D +  A       D
Sbjct: 181 WEFQASPLLLPAPTQVPQLQGRAASLLEHHASQLCQHVNRDCPGDEDRVRWASRVPSQED 240

Query: 241 SVFTHQKVENKLSDLNIIAEETKSSDSIVGRLSDSGETAMVDNLVNAPKYQSEVSGNESV 300
           S    Q++  +L +    +     + + V  L +  +T     +   PK  S  + +E  
Sbjct: 241 SRAPQQRLHKQLIEHLRQSWGPLGAPTQVRDLGEMLQTWGARAMTGVPK-GSRFTHSEKF 300

Query: 301 ---------AVQGNNGQVSISRHEVSSYIQKNDEDQEIRP--------LEEVSTKASELE 360
                    A Q  +   +  R E  +   +  E + +R         +EEV      L 
Sbjct: 301 TFHLEPQVQAAQVADVPATSQRLEQDTRAAQEQELESLREQLASVNHNIEEVEADMKTLG 360

Query: 361 HLLVELE-----------------RLKAATGIVFDDNRSIEVHLQELEEQISSRKLNLLA 420
             LV++E                 RLK+ T  +  D  +   +L +L+  + S    L+ 
Sbjct: 361 INLVQVETECRQSELSVAEQEQALRLKSRTVELLPDGAA---NLAKLQLVVESSAQRLIH 420

Query: 421 AKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREEGNYN 480
             S W+  +  L  + R+L+        ++  +L +++E     +    E RR+EE    
Sbjct: 421 LASQWEKHRVPLLAEYRHLRRLQDCRELESSRRLAEIQELHHSVRAAAEEARRKEEVYKQ 480

Query: 481 LSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLHRTY 498
           L +EL+  PK  SR +Y  R+ EI  N RKQ  +I +IL +T+ELQ E N++  +L RT+
Sbjct: 481 LVSELETLPKDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTF 540

BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match: Q28G12 (Coiled-coil domain-containing protein 22 OS=Xenopus tropicalis OX=8364 GN=ccdc22 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.3e-27
Identity = 154/629 (24.48%), Postives = 261/629 (41.49%), Query Frame = 0

Query: 1   MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
           MEE   IL++SL+  G  VP DV SIR+    L+     + L  I+       +  LP  
Sbjct: 1   MEEVDRILIHSLRSCGTEVPEDVQSIRQFNTELIVEAVVRCLRVINPSLGATLSHVLPPG 60

Query: 61  VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSD------- 120
           ++ +F+I T +A A +DLGY G++ +  FLY SE D+  L+ FL E+LP  S        
Sbjct: 61  MSARFRIGTSLAQACQDLGYPGEVGYQTFLYSSEPDIRALLIFLAEKLPRDSPEDAHQPA 120

Query: 121 GKSKVLEDGDG---------------------RKETKADTLKCHYVSGQSDAID-TADSV 180
           GKS +L+                         R+   +  L   +    S A D T  S+
Sbjct: 121 GKSALLQREIAATIKRQLSLPWLPSSCRICALRRSQNSCRLHRFHAQPLSLATDPTLKSI 180

Query: 181 FTHQK---------VENKLSDLNIIA-----------------EETKSSDSIVGRLSDSG 240
              +K         V ++L  L  +A                 +    S  +  RLS   
Sbjct: 181 PDERKEYWQCYLPSVTSQLPHLPSVAASLLERNTSELSAKQEWDAEWKSQGLASRLSPED 240

Query: 241 ETA--------------------MVDNLVNAPKYQSEVSGNESVAVQGNNGQVSISR--- 300
             +                    + +N + +   Q      ++  + G + Q   SR   
Sbjct: 241 YRSRKRQRLQKRIQEQLRQCAQLLAENHLPSSSSQDLTDMLKAFNLDGGSDQKKGSRFTR 300

Query: 301 ------------------------------------HEVSSYIQKNDE-DQEIRPLEE-- 360
                                                E+SS  ++ D  +QEIR L E  
Sbjct: 301 TQRFTYQQDPHTLKEQMQRAAEILPKKDAQDTDAEQQELSSLQEQIDSIEQEIRGLSESN 360

Query: 361 ---------VSTKASELEHLLVELERL----KAATGIVFDDNRSIEVHLQELEEQISSRK 420
                    V  + +E+     E E++    K A  ++ D + ++ V LQ L +  S R 
Sbjct: 361 KRLQLTVSQVEGEVNEMRQSCEEKEKIVRVKKRAVELLPDADNNL-VKLQALVDASSHRM 420

Query: 421 LNLLAAKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRRE 480
            NL+     W++ +  L  + R L+        ++   ++  ++   + +    E +R+E
Sbjct: 421 ANLVGQ---WESHQVRLSEEYRELKRVQQEQEDESSRWMKDAKDLYEKIRGAADEAKRKE 480

Query: 481 EGNYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQER 498
           E    L +E +  PK+ SR +Y  R+ EI  N +KQ  +I +IL +T+ELQ E NN+  +
Sbjct: 481 ELYKQLLSEYESLPKEVSRAAYTQRILEIVSNIKKQKEEITKILSDTKELQKEINNLTGK 540

BLAST of CmaCh16G009510.1 vs. TAIR 10
Match: AT1G55830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530). )

HSP 1 Score: 357.1 bits (915), Expect = 2.4e-98
Identity = 227/508 (44.69%), Postives = 321/508 (63.19%), Query Frame = 0

Query: 2   EESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDSV 61
           EES++IL+ +L +SGVS+P D +S+ + TP  L SICAQ+LN I       ++  LPDS+
Sbjct: 3   EESRDILMTTLIESGVSIPGDFTSVSEFTPEALVSICAQLLNLI--DPSASFSDELPDSL 62

Query: 62  ADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSDGKSKVLED 121
            ++F+ICT+IA ++K+LGYI DMS++KFL+PSE+D Y+L+RFLVERL E+S+G+ K L  
Sbjct: 63  PERFRICTDIAHSVKNLGYINDMSYYKFLHPSEDDSYRLVRFLVERLSEISEGR-KTLTA 122

Query: 122 GDGRKETKADTLKCHYVSGQSDAIDTADSVFTH--QKVENKLSDLNIIAEETKSSDSIVG 181
           GD     K +T +   +S      +  D  F    QKVE  L DL + +E++ SSDS+  
Sbjct: 123 GDIASRPKMETFR--DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSSDSLAK 182

Query: 182 RLSDSGETAMVDNLVNAPKYQSEVSGNESVAVQGNNGQVSISRHEVSSY---IQKNDEDQ 241
             S     A VD       + S+ + +    V+ +      SR E +SY    + N E  
Sbjct: 183 NTS-----ANVD-------FSSQKTDDPVTDVRSDLSLRDSSRCEENSYEDPFETNYETV 242

Query: 242 EIRP-----LEEVSTKASELEHLLVELERLKAATGIVFDDNRSIEVHLQELEEQISSRKL 301
           E++      LEE+ + +S+L  L  ELE L+ A   + DD +    +L++L +Q+  ++ 
Sbjct: 243 ELQNQHDVLLEELESGSSQLCSLESELELLQMAAERLLDDKKPGGSYLEQLNQQLVVKRC 302

Query: 302 NLLAAKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREE 361
           N++  K  WD  +  LE K+  L + L    P+A EK  KLR+ EL+ Q + SEI++RE+
Sbjct: 303 NIMDLKKQWDDVRLTLETKKLLLLDQLHVEEPEAKEKFHKLRKTELDLQSLSSEIQKRED 362

Query: 362 GNYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERL 421
              NL  EL++QPK A R+SYI  +KEITKNSRK D DI RI  ETRELQLE N+IQERL
Sbjct: 363 ERCNLYNELERQPKAAPRKSYIHGIKEITKNSRKLDTDIQRISGETRELQLEKNSIQERL 422

Query: 422 HRTYAIVDELVLREAKKEGIGKKAHKLLTSIHENFGEISNKILSTDRLRRETAEYEKKIA 481
           HR+YA+VDE+V RE KK+   ++ +KLLTSIH  F +IS KIL TDR RRET +YEKK+ 
Sbjct: 423 HRSYAVVDEMVTREVKKDPAVRQVYKLLTSIHSIFEQISEKILMTDRFRRETVDYEKKLG 482

Query: 482 ASASRSLDFNKLQADLDAIRKENSCLEQ 500
           +  +R +   KLQADLDAIRKEN  L++
Sbjct: 483 SITARGMSLEKLQADLDAIRKENESLKK 493

BLAST of CmaCh16G009510.1 vs. TAIR 10
Match: AT1G55830.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530); Has 10940 Blast hits to 7289 proteins in 653 species: Archae - 228; Bacteria - 791; Metazoa - 6174; Fungi - 805; Plants - 342; Viruses - 19; Other Eukaryotes - 2581 (source: NCBI BLink). )

HSP 1 Score: 271.9 bits (694), Expect = 1.0e-72
Identity = 184/422 (43.60%), Postives = 257/422 (60.90%), Query Frame = 0

Query: 88  KFLYPSEEDLYKLIRFLVERLPEVSDGKSKVLEDGDGRKETKADTLKCHYVSGQSDAIDT 147
           +FL+PSE+D Y+L+RFLVERL E+S+G+ K L  GD     K +T +   +S      + 
Sbjct: 6   QFLHPSEDDSYRLVRFLVERLSEISEGR-KTLTAGDIASRPKMETFR--DISDDMMVNED 65

Query: 148 ADSVFTH--QKVENKLSDLNIIAEETKSSDSIVGRLSDSGETAMVDNLVNAPKYQSEVSG 207
            D  F    QKVE  L DL + +E++ SSDS+    S     A VD       + S+ + 
Sbjct: 66  KDETFDMHIQKVEAVLKDLTMTSEKSHSSDSLAKNTS-----ANVD-------FSSQKTD 125

Query: 208 NESVAVQGNNGQVSISRHEVSSY---IQKNDEDQEIRP-----LEEVSTKASELEHLLVE 267
           +    V+ +      SR E +SY    + N E  E++      LEE+ + +S+L  L  E
Sbjct: 126 DPVTDVRSDLSLRDSSRCEENSYEDPFETNYETVELQNQHDVLLEELESGSSQLCSLESE 185

Query: 268 LERLKAATGIVFDDNRSIEVHLQELEEQISSRKLNLLAAKSGWDAEKELLENKRRNLQES 327
           LE L+ A   + DD +    +L++L +Q+  ++ N++  K  WD  +  LE K+  L + 
Sbjct: 186 LELLQMAAERLLDDKKPGGSYLEQLNQQLVVKRCNIMDLKKQWDDVRLTLETKKLLLLDQ 245

Query: 328 LCASNPKAPEKLQKLREFELEKQLIESEIRRREEGNYNLSTELKKQPKQASRRSYIDRVK 387
           L    P+A EK  KLR+ EL+ Q + SEI++RE+   NL  EL++QPK A R+SYI  +K
Sbjct: 246 LHVEEPEAKEKFHKLRKTELDLQSLSSEIQKREDERCNLYNELERQPKAAPRKSYIHGIK 305

Query: 388 EITKNSRKQDADIDRILKETRELQLESNNIQERLHRTYAIVDELVLREAKKEGIGKKAHK 447
           EITKNSRK D DI RI  ETRELQLE N+IQERLHR+YA+VDE+V RE KK+   ++ +K
Sbjct: 306 EITKNSRKLDTDIQRISGETRELQLEKNSIQERLHRSYAVVDEMVTREVKKDPAVRQVYK 365

Query: 448 LLTSIHENFGEISNKILSTDRLRRETAEYEKKIAASASRSLDFNKLQADLDAIRKENSCL 500
           LLTSIH  F +IS KIL TDR RRET +YEKK+ +  +R +   KLQADLDAIRKEN  L
Sbjct: 366 LLTSIHSIFEQISEKILMTDRFRRETVDYEKKLGSITARGMSLEKLQADLDAIRKENESL 412

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
B0WTU52.6e-2822.94Coiled-coil domain-containing protein 22 homolog OS=Culex quinquefasciatus OX=71... [more]
P861824.4e-2824.68Coiled-coil domain-containing protein 22 OS=Rattus norvegicus OX=10116 GN=Ccdc22... [more]
O608265.7e-2825.60Coiled-coil domain-containing protein 22 OS=Homo sapiens OX=9606 GN=CCDC22 PE=1 ... [more]
Q9JIG77.4e-2824.52Coiled-coil domain-containing protein 22 OS=Mus musculus OX=10090 GN=Ccdc22 PE=1... [more]
Q28G126.3e-2724.48Coiled-coil domain-containing protein 22 OS=Xenopus tropicalis OX=8364 GN=ccdc22... [more]
Match NameE-valueIdentityDescription
AT1G55830.22.4e-9844.69unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G55830.11.0e-7243.60unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 297..317
NoneNo IPR availableCOILSCoilCoilcoord: 480..500
NoneNo IPR availableCOILSCoilCoilcoord: 241..261
NoneNo IPR availableCOILSCoilCoilcoord: 390..410
IPR008530Coiled-coil domain-containing protein 22PFAMPF05667DUF812coord: 241..472
e-value: 5.6E-36
score: 124.5
coord: 1..115
e-value: 1.0E-29
score: 103.8
IPR008530Coiled-coil domain-containing protein 22PANTHERPTHR15668JM1 PROTEINcoord: 1..127
coord: 236..503

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh16G009510CmaCh16G009510gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G009510.1:exon:335CmaCh16G009510.1:exon:335exon
CmaCh16G009510.1:exon:336CmaCh16G009510.1:exon:336exon
CmaCh16G009510.1:exon:337CmaCh16G009510.1:exon:337exon
CmaCh16G009510.1:exon:338CmaCh16G009510.1:exon:338exon
CmaCh16G009510.1:exon:339CmaCh16G009510.1:exon:339exon
CmaCh16G009510.1:exon:340CmaCh16G009510.1:exon:340exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G009510.1:five_prime_utrCmaCh16G009510.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G009510.1:cdsCmaCh16G009510.1:cdsCDS
CmaCh16G009510.1:cdsCmaCh16G009510.1:cds_2CDS
CmaCh16G009510.1:cdsCmaCh16G009510.1:cds_3CDS
CmaCh16G009510.1:cdsCmaCh16G009510.1:cds_4CDS
CmaCh16G009510.1:cdsCmaCh16G009510.1:cds_5CDS
CmaCh16G009510.1:cdsCmaCh16G009510.1:cds_6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G009510.1:three_prime_utrCmaCh16G009510.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh16G009510.1CmaCh16G009510.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process
molecular_function GO:0097602 cullin family protein binding