Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGTCTGAAGCGACAAGGGAAACTGTAAAAATACGAACAGCGGCAATGGAGGAATCTCAGGAAATCCTACTGAATTCCCTCCAAAAATCTGGTGTTTCAGTCCCTCCAGATGTTTCCTCGATTCGGAAATTAACTCCTCCGCTTTTGTTCTCGATCTGTGCTCAAGTCTTGAATCGAATACATGGCCAAACTCAAATCCCCTACGCCACTTCTCTGCCGGACTCCGTCGCTGATCAGTTCAAGATATGTACTGAAATCGCTTCCGCTATTAAGGATCTGGGTTACATAGGAGATATGAGCTTCCACAAGGTATGTCCCCTTTTCTGTCTGCTTGAATTTCGGAAAATTTTGGGCGATTGCGAGAAATCTGTTTGCAAGTACGAACATACTGATTCTGTTGTTGTTTATATTTGGTTCATTTATGAATTTACTCGATTTTTGTAGACATGCATTGTGAGCGTTCTGTTTCTATTAATGGTGATCAAAGTATACCCTAAAGTTTATGAGTACTGGAAACTTTTCAGTGTCTAGGAACTAAATAGGATGTGTTTAAAAGGAGAGTCACAAATTTATAGCTGACGTCTGTATTTCTTTTGACCACATAACTTTTTGGACATTAGCAAAAGCTAAGGCATTTGTTTCGGATATCCATTTGCTGTTGTACTTAGAAACAGACTACATGTGTTGCTTACAACAGTTCTTGTATCCATCTGAAGAGGACTTGTATAAGTTGATAAGATTCTTGGTGGAGAGACTTCCTGAAGTTTCTGATGGAAAATCCAAGGTTTTGGAAGATGGTGATGGTAGAAAAGAAACGAAAGCTGACACTCTCAAATGCCACTATGTGTCGGGCCAATCAGACGCTATCGACACTGCTGATTCCGTTTTTACCCATCAGAAGGTTGAGAACAAACTTTCCGATCTTAATATTATTGCTGAAGAGACAAAATCTTCAGATTCCATTGTCGGTCGATTATCTGATTCCGGTGAAACAGCTATGGTTGATAACCTTGTTAATGCTCCCAAATATCAGTCTGAGGTTTCAGGAAATGAATCAGTTGCAGTGCAAGGGAATAATGGACAAGTATCAATTTCCAGACATGAAGTTAGTTCTTACATTCAAAAGAATGATGAAGTAAGTTCTTCTTATGGCTCCTAACTTCAAACAATTATTAAAATCTGTTGTGTATAAGAGAAAAGAATGAAATGGTCAGCCCCTTGGGAAAAGGTTATTTGATCAGATGATATAAAGAATATTGTATATCTTCTATTCTTGTTTTAAATGAGAATTGAGGCTGAGAAATTTCAGGATCAAGAGATCAGACCATTGGAAGAGGTCAGTACAAAGGCTTCTGAATTAGAGCATCTTCTTGTCGAGTTAGAAAGGTTGAAGGCAGCGACTGGAATTGTATTTGATGATAATCGCTCGATTGAAGTCCATCTTCAGGAACTGGAGGAGCAAATCAGTTCTAGAAAGCTGAATCTTCTTGCAGCGAAGTCGGGGTGGTGGGTCATCGTTTTAGTTTGATATCTGGATTAATTTTTATACTGCTTCTGCATTTTTAATTTAAAAACCCAATTTCAAAGAGAAGTTGAGTCCTAATACAAATATATAGATTTCATTTACTTTTTCTTTATCATTGAACTCTACAGGGATGCAGAGAAGGAGCTTTTGGAAAATAAAAGGCGAAATCTTCAAGAATCACTATGTGCAAGTAATCCGAAGGCTCCAGAAAAGCTGCAAAAATTGAGAGAGTTTGAATTGGAAAAGCAGCTCATCGAGTCGGAAATCAGGAGGCGGTATGCTACTTCTTTGAATATTAAATAGGAAGTGAATATGAATCCTTACTGAAATCTATGAAATATTCTCAGTATATCTAGTTATATTTTTCAAAATGAAACTATTGTCACAGGAAACTGATGTTTTAGATGCGAAGTAATTTGGAGATACCCTCCTTAGTCTTAGGTTTAGAATGAATTTTGGATTACTTTTGTAGGGTGAAAAGTGCTTTCAGCTGATCAAAATCACTTTCCAAAATTTTGTTGAATAGAGTTGGGCGAGTTCACTTGAACTCTTTATTAACACCAATTGAGAAGAGATTAGATGACACTCTATAGAAACTACTTGCACTCTGTGCTTTGAATTTCTTTTGATGAAGACGTTGGTAGGGTGGAGGAGTATTTAGCAGAGGGTAGACAATTTATTCCTAAAATATCTAACAATTTATTCCTAAAATACCTAAACCATTTTTCTAAAATACATAGACAATGGGCTCATACAACTATTGGGCTTAACCCTATTGGGCTAGTGATATATTTTAACACTCCCCCGTAGCACTAGTCCTCATTCGCTGCACCATGTTGAGTTGACAGCTAAAGCTCTCATATATGCCAGGATTCGGCCCTTTTGTAAACAAGTGTTGCCCACTATTTTGTTACACAAATATAAGTGCTCTTAAAAATTGTAATAGTCCTTGAAAGCACTTAGTATCTCAAGAGGAAGTACTTAATTGGTTTCTGTTCCAAAACTGCATACGGAAGAAGTTCTCCAATTAAACTTTTTTAATAAAAATCATCCGGAACTTACTATCAATTATCAATACCTTAATTACTTCTTAATCATTTGTGGTTTCTTGAGAAAGCTAGGTTTTGAAAATCATTATCAACCTGTCTTTATATAAAGTGATATCATAATTAGGTCTTTTCCTTTTGGGGTGGGTGGGTTTGTCATATTAAATTTGATGTTACTGTATCAAAGAGTAATCTGTACCTTTGTGGAGAGTTTATGGGGATCTATTGCGTGTTATGTTAGCATTTATATTCAAAAGTCACTACCCTGTTTCTCTTGTAATCTTGACACCTTTCATCATTTTTACTTTTTGGGTGGGTGGGGCAACTCGAAGAAAACTTCCTAAACATGATATGCAACGCAAAAATTTATAAGCAGTGGGGCGTCCTGTTGGCTTGTTATTATCTCTTGCTTATGTCTAACGATATTGATTTTTCCTCAAATATTGTCACACATCCTTCAGGGAGGAAGGAAATTATAATCTCTCAACAGAGCTTAAGAAGCAGCCAAAACAGGCATCGAGACGATCCTACATCGATAGGGTGAAGGAGATCACAAAAAATAGTCGGAAACAAGATGCTGACATTGACCGAATCCTTAAAGAAACTAGAGAGCTTCAGCTAGAAAGTAACAATATTCAAGAACGCCTCCATAGAACCTACGCAATTGTGGATGAGCTAGTTCTCAGGTATGCACCATAGAACTAGTGAGAACTGAAACAGAACTATTACATCATTGCTTTAAGTGGTATTAATCAGTTGGTTGACAATGATGTAGTAATAGCGTCCCATATCTTGCCCCTCATTTATGTTTCATACTCGACCGAAAAAAATTGACCTTTTATCTTGCTTAGAAAACTAGCTGAACAGATTCATATCCTGTGTAGGGAAGCAAAAAAAGAAGGCATAGGCAAGAAAGCACACAAACTCCTGACTAGTATCCATGAGAATTTCGGAGAGATCTCGAACAAAATCCTGTCTACGGATAGATTAAGAAGAGAAACTGCAGAATACGAGAAGAAGATAGCGGCCTCAGCATCCCGAAGTTTAGATTTTAACAAACTACAAGCTGATCTGGATGCTATCAGGAAGGAAAATAGTTGCCTAGAGCAAAATCTCTGCCATAAAAAACCCATTGACCAAATGTAGAATGTTTTCTGGATTTCTTTTGTTTAGTTGTAAATCAATCATGCTTATTGCAACAATTACATTCTAGTGCAAAGGAGAAACAATTCAGTTCAAATGACATCATCTGCTATTTACTTAAA
mRNA sequence
GAAGTCTGAAGCGACAAGGGAAACTGTAAAAATACGAACAGCGGCAATGGAGGAATCTCAGGAAATCCTACTGAATTCCCTCCAAAAATCTGGTGTTTCAGTCCCTCCAGATGTTTCCTCGATTCGGAAATTAACTCCTCCGCTTTTGTTCTCGATCTGTGCTCAAGTCTTGAATCGAATACATGGCCAAACTCAAATCCCCTACGCCACTTCTCTGCCGGACTCCGTCGCTGATCAGTTCAAGATATGTACTGAAATCGCTTCCGCTATTAAGGATCTGGGTTACATAGGAGATATGAGCTTCCACAAGTTCTTGTATCCATCTGAAGAGGACTTGTATAAGTTGATAAGATTCTTGGTGGAGAGACTTCCTGAAGTTTCTGATGGAAAATCCAAGGTTTTGGAAGATGGTGATGGTAGAAAAGAAACGAAAGCTGACACTCTCAAATGCCACTATGTGTCGGGCCAATCAGACGCTATCGACACTGCTGATTCCGTTTTTACCCATCAGAAGGTTGAGAACAAACTTTCCGATCTTAATATTATTGCTGAAGAGACAAAATCTTCAGATTCCATTGTCGGTCGATTATCTGATTCCGGTGAAACAGCTATGGTTGATAACCTTGTTAATGCTCCCAAATATCAGTCTGAGGTTTCAGGAAATGAATCAGTTGCAGTGCAAGGGAATAATGGACAAGTATCAATTTCCAGACATGAAGTTAGTTCTTACATTCAAAAGAATGATGAAGATCAAGAGATCAGACCATTGGAAGAGGTCAGTACAAAGGCTTCTGAATTAGAGCATCTTCTTGTCGAGTTAGAAAGGTTGAAGGCAGCGACTGGAATTGTATTTGATGATAATCGCTCGATTGAAGTCCATCTTCAGGAACTGGAGGAGCAAATCAGTTCTAGAAAGCTGAATCTTCTTGCAGCGAAGTCGGGGTGGGATGCAGAGAAGGAGCTTTTGGAAAATAAAAGGCGAAATCTTCAAGAATCACTATGTGCAAGTAATCCGAAGGCTCCAGAAAAGCTGCAAAAATTGAGAGAGTTTGAATTGGAAAAGCAGCTCATCGAGTCGGAAATCAGGAGGCGGGAGGAAGGAAATTATAATCTCTCAACAGAGCTTAAGAAGCAGCCAAAACAGGCATCGAGACGATCCTACATCGATAGGGTGAAGGAGATCACAAAAAATAGTCGGAAACAAGATGCTGACATTGACCGAATCCTTAAAGAAACTAGAGAGCTTCAGCTAGAAAGTAACAATATTCAAGAACGCCTCCATAGAACCTACGCAATTGTGGATGAGCTAGTTCTCAGGGAAGCAAAAAAAGAAGGCATAGGCAAGAAAGCACACAAACTCCTGACTAGTATCCATGAGAATTTCGGAGAGATCTCGAACAAAATCCTGTCTACGGATAGATTAAGAAGAGAAACTGCAGAATACGAGAAGAAGATAGCGGCCTCAGCATCCCGAAGTTTAGATTTTAACAAACTACAAGCTGATCTGGATGCTATCAGGAAGGAAAATAGTTGCCTAGAGCAAAATCTCTGCCATAAAAAACCCATTGACCAAATGTAGAATGTTTTCTGGATTTCTTTTGTTTAGTTGTAAATCAATCATGCTTATTGCAACAATTACATTCTAGTGCAAAGGAGAAACAATTCAGTTCAAATGACATCATCTGCTATTTACTTAAA
Coding sequence (CDS)
ATGGAGGAATCTCAGGAAATCCTACTGAATTCCCTCCAAAAATCTGGTGTTTCAGTCCCTCCAGATGTTTCCTCGATTCGGAAATTAACTCCTCCGCTTTTGTTCTCGATCTGTGCTCAAGTCTTGAATCGAATACATGGCCAAACTCAAATCCCCTACGCCACTTCTCTGCCGGACTCCGTCGCTGATCAGTTCAAGATATGTACTGAAATCGCTTCCGCTATTAAGGATCTGGGTTACATAGGAGATATGAGCTTCCACAAGTTCTTGTATCCATCTGAAGAGGACTTGTATAAGTTGATAAGATTCTTGGTGGAGAGACTTCCTGAAGTTTCTGATGGAAAATCCAAGGTTTTGGAAGATGGTGATGGTAGAAAAGAAACGAAAGCTGACACTCTCAAATGCCACTATGTGTCGGGCCAATCAGACGCTATCGACACTGCTGATTCCGTTTTTACCCATCAGAAGGTTGAGAACAAACTTTCCGATCTTAATATTATTGCTGAAGAGACAAAATCTTCAGATTCCATTGTCGGTCGATTATCTGATTCCGGTGAAACAGCTATGGTTGATAACCTTGTTAATGCTCCCAAATATCAGTCTGAGGTTTCAGGAAATGAATCAGTTGCAGTGCAAGGGAATAATGGACAAGTATCAATTTCCAGACATGAAGTTAGTTCTTACATTCAAAAGAATGATGAAGATCAAGAGATCAGACCATTGGAAGAGGTCAGTACAAAGGCTTCTGAATTAGAGCATCTTCTTGTCGAGTTAGAAAGGTTGAAGGCAGCGACTGGAATTGTATTTGATGATAATCGCTCGATTGAAGTCCATCTTCAGGAACTGGAGGAGCAAATCAGTTCTAGAAAGCTGAATCTTCTTGCAGCGAAGTCGGGGTGGGATGCAGAGAAGGAGCTTTTGGAAAATAAAAGGCGAAATCTTCAAGAATCACTATGTGCAAGTAATCCGAAGGCTCCAGAAAAGCTGCAAAAATTGAGAGAGTTTGAATTGGAAAAGCAGCTCATCGAGTCGGAAATCAGGAGGCGGGAGGAAGGAAATTATAATCTCTCAACAGAGCTTAAGAAGCAGCCAAAACAGGCATCGAGACGATCCTACATCGATAGGGTGAAGGAGATCACAAAAAATAGTCGGAAACAAGATGCTGACATTGACCGAATCCTTAAAGAAACTAGAGAGCTTCAGCTAGAAAGTAACAATATTCAAGAACGCCTCCATAGAACCTACGCAATTGTGGATGAGCTAGTTCTCAGGGAAGCAAAAAAAGAAGGCATAGGCAAGAAAGCACACAAACTCCTGACTAGTATCCATGAGAATTTCGGAGAGATCTCGAACAAAATCCTGTCTACGGATAGATTAAGAAGAGAAACTGCAGAATACGAGAAGAAGATAGCGGCCTCAGCATCCCGAAGTTTAGATTTTAACAAACTACAAGCTGATCTGGATGCTATCAGGAAGGAAAATAGTTGCCTAGAGCAAAATCTCTGCCATAAAAAACCCATTGACCAAATGTAG
Protein sequence
MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDSVADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSDGKSKVLEDGDGRKETKADTLKCHYVSGQSDAIDTADSVFTHQKVENKLSDLNIIAEETKSSDSIVGRLSDSGETAMVDNLVNAPKYQSEVSGNESVAVQGNNGQVSISRHEVSSYIQKNDEDQEIRPLEEVSTKASELEHLLVELERLKAATGIVFDDNRSIEVHLQELEEQISSRKLNLLAAKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREEGNYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLHRTYAIVDELVLREAKKEGIGKKAHKLLTSIHENFGEISNKILSTDRLRRETAEYEKKIAASASRSLDFNKLQADLDAIRKENSCLEQNLCHKKPIDQM
Homology
BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match:
B0WTU5 (Coiled-coil domain-containing protein 22 homolog OS=Culex quinquefasciatus OX=7176 GN=CPIJ010681 PE=3 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 2.6e-28
Identity = 131/571 (22.94%), Postives = 250/571 (43.78%), Query Frame = 0
Query: 1 MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
M+E I+L+SL++ G ++ +V+S+ + +P LL + ++ + I +P +LP
Sbjct: 1 MDEIDNIILHSLRQIGCTLDDEVTSLDEFSPTLLVQVVSKCITLIDSSLDLP--RTLPPG 60
Query: 61 VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSDGK----- 120
+A +F +A A + +GY D+ + FLY + ++ +++ FL+ERLP+ S K
Sbjct: 61 MAQRFTATASLAEACRTIGYRRDIGYQTFLYSNVAEVRRVLMFLIERLPKESADKAAGTG 120
Query: 121 ----------SKVLEDGDGRKETKADTLKCHYVSGQSDAIDTADSVFTHQKVENKLSDLN 180
S++ + + C +G S + A F +K+
Sbjct: 121 QPLDVTTELESRICASLQSQLQAPWMPEFCRTAAGPSSS-QIAFRRFVPRKLNIPFVTQG 180
Query: 181 IIAEETKSSDSIVGRLSDSGETAMVDNLVNAPKYQSEVSGNESVAVQGNNGQVSISRHEV 240
IA E K S L E + + +++ A + SG V + +V +
Sbjct: 181 DIAAEVKEFWSRQASLDTLDEDSFIPSVIAANDGALKASGGAIDEV--DRIKVCSPVDRL 240
Query: 241 SSYIQKNDEDQEIRPLEEVSTK----------------------ASELEHLLVELERL-- 300
+ +++ + P+ +V+ + E++ + VE+ER
Sbjct: 241 QRFYTSSEQKSSVVPVGKVAVEEKLDALAIVEAARPGKTPLESLQEEIDQIRVEIERAVG 300
Query: 301 -------------------KAATGIVFDDNRSIE-VHLQELEEQISSRKLNLLAAKSG-- 360
+AA G + D+ + E H+ + +++ RKL + G
Sbjct: 301 EGTGLEGERMEVVELCEVQRAAVGKLKDEKKIKERTHILLEDPEVNVRKLQGIIGAGGER 360
Query: 361 -------WDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREEG 420
WD + LE + + ++ + + ++ + + + +++ +
Sbjct: 361 MKKLQDQWDVHRIPLEQELEGYRVKHSDKLSQSQQIVDQIEATRHKSEEVMMDLQTKSAM 420
Query: 421 NYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLH 480
+ L EL+K + SR +Y R+ EI N RKQ DID+IL++TR LQ E N I +L
Sbjct: 421 HARLQKELEKLNRTVSRTAYTSRILEIVGNIRKQKTDIDKILQDTRTLQKEINTITGQLD 480
Query: 481 RTYAIVDELVLREAKKEGIGKKAHKLLTSIHENFGEISNKILSTDRLRRETAEYEKKIAA 502
R + + D+L+ R AKK+ KKA+KLL ++H + E+ + T ++RE + E +I
Sbjct: 481 RQFTVTDDLIFRNAKKDEHAKKAYKLLVTLHSDCAELMALVQETGAVKREIRDLEDQIET 540
BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match:
P86182 (Coiled-coil domain-containing protein 22 OS=Rattus norvegicus OX=10116 GN=Ccdc22 PE=1 SV=2)
HSP 1 Score: 127.5 bits (319), Expect = 4.4e-28
Identity = 154/624 (24.68%), Postives = 261/624 (41.83%), Query Frame = 0
Query: 1 MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
MEE+ IL++SL+++G +VPP+V ++R T L+ + L I+ + LP +
Sbjct: 1 MEEADRILIHSLRQAGTAVPPEVQTLRAFTTELVVEAVVRCLRVINPDVGSGLSHLLPPA 60
Query: 61 VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLP----EVSD--- 120
++ +F++ +A A DLGY ++ + FLYPSE DL L+ FL ERLP E +D
Sbjct: 61 MSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPTDASEDADQPA 120
Query: 121 GKSKVLEDGDGR------------------------------------------------ 180
G S + G
Sbjct: 121 GDSAIFLRAIGSQIRDQLALPWVPPLLRTPKVQRLQGSALQQAFHSSRLVLPELNCRGEP 180
Query: 181 KETKADTLKCHYVSGQSDAIDTADSVFTHQKVE-------------------NKL-SDLN 240
+E +A L S + A S+ H ++ ++L S +
Sbjct: 181 REFQASPLLLPAPSQVPQLLGRAASLLEHHAIQLCQHVNRDCPGDEDRVRWASRLPSQED 240
Query: 241 IIAEETKSSDSIVGRLSDS----GETAMVDNL------------VNAPKYQSEVSGNESV 300
A + + ++ L S G V +L PK S + +E
Sbjct: 241 PRAPQQRLHKQLIEHLRQSWGPLGAPTQVRDLGEMLQAWGAKAMTGVPK-GSRFTHSEKF 300
Query: 301 ---------AVQGNNGQVSISRHEVSSYIQKNDEDQEIRP--------LEEVSTKASELE 360
A Q + + R E + + +E + +R +EEV L
Sbjct: 301 TFHLEPQVQAAQVADIPAASQRPEQDTRAAQEEELESLREQLASVNHNIEEVEANMKSLG 360
Query: 361 HLLVELE-----------------RLKAATGIVFDDNRSIEVHLQELEEQISSRKLNLLA 420
LV++E RLK+ T + D + +L +L+ + S L+
Sbjct: 361 MNLVQVETECRQSELSVAEQEQALRLKSRTVELLPDGAA---NLTKLQLVVESSAQRLIH 420
Query: 421 AKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREEGNYN 480
S W+ + L + R+L++ ++ +L +++E + E RR+EE
Sbjct: 421 LASQWEKHRVPLLAEYRHLRKLQDCRELESSRRLVEIQELHQSVRAAAEEARRKEEVYKQ 480
Query: 481 LSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLHRTY 498
L +EL+ PK SR +Y R+ EI N RKQ +I +IL +T+ELQ E N++ +L RT+
Sbjct: 481 LVSELETLPKDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTF 540
BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match:
O60826 (Coiled-coil domain-containing protein 22 OS=Homo sapiens OX=9606 GN=CCDC22 PE=1 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 5.7e-28
Identity = 161/629 (25.60%), Postives = 254/629 (40.38%), Query Frame = 0
Query: 1 MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
MEE+ IL++SL+++G +VPPDV ++R T L+ + L I+ + LP +
Sbjct: 1 MEEADRILIHSLRQAGTAVPPDVQTLRAFTTELVVEAVVRCLRVINPAVGSGLSPLLPLA 60
Query: 61 VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSDGKSKVLE 120
++ +F++ +A A DLGY ++ + FLYPSE DL L+ FL ERLP + E
Sbjct: 61 MSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLP------TDASE 120
Query: 121 DGDGRKETKADTLKCHYVSGQSDAIDTADSVFTHQKVENKLSDL--NIIAEETKSSDSIV 180
D D A L+ + Q V H + KL L + + + +S +V
Sbjct: 121 DADQPAGDSAILLRA--IGSQIRDQLALPWVPPHLRTP-KLQHLQGSALQKPFHASRLVV 180
Query: 181 GRLSDSGE--------------------TAMVDNLVNAPKYQ------------------ 240
LS GE V +L+ Q
Sbjct: 181 PELSSRGEPREFQASPLLLPVPTQVPQPVGRVASLLEHHALQLCQQTGRDRPGDEDWVHR 240
Query: 241 -SEVSGNESVAVQGNNGQVSISRHEVSSY------------------------------- 300
S + E Q Q ++ H S+
Sbjct: 241 TSRLPPQEDTRAQRQRLQKQLTEHLRQSWGLLGAPIQARDLGELLQAWGAGAKTGAPKGS 300
Query: 301 ------------------IQKNDEDQEIRPLEEVSTKA--SELEHLLVELERLKAATGIV 360
Q +D R E+V+ A ELE L +LE + + V
Sbjct: 301 RFTHSEKFTFHLEPQAQATQVSDVPATSRRPEQVTWAAQEQELESLREQLEGVNRSIEEV 360
Query: 361 FDDNRSIEVHLQELEEQISSRKLNLLAAKSGWDAEK---ELLENKRRNLQE-SLCASNP- 420
D +++ V + E + KL+ + + ELL + NL + L N
Sbjct: 361 EADMKTLGVSFVQAESECRHSKLSTAEREQALRLKSRAVELLPDGTANLAKLQLVVENSA 420
Query: 421 -------------KAP--------EKLQKLREFELEKQLIE------------SEIRRRE 480
+ P KLQ RE E ++L E E RR+E
Sbjct: 421 QRVIHLAGQWEKHRVPLLAEYRHLRKLQDCRELESSRRLAEIQELHQSVRAAAEEARRKE 480
Query: 481 EGNYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQER 498
E L +EL+ P+ SR +Y R+ EI N RKQ +I +IL +T+ELQ E N++ +
Sbjct: 481 EVYKQLMSELETLPRDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGK 540
BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match:
Q9JIG7 (Coiled-coil domain-containing protein 22 OS=Mus musculus OX=10090 GN=Ccdc22 PE=1 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 7.4e-28
Identity = 153/624 (24.52%), Postives = 260/624 (41.67%), Query Frame = 0
Query: 1 MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
MEE+ IL++SL+++G +VPP+V ++R T L+ + L I+ + LP +
Sbjct: 1 MEEADRILIHSLRQAGTAVPPEVQTLRAFTTELVVEAVVRCLRVINPDVGSGLSHLLPPA 60
Query: 61 VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLP----EVSD--- 120
++ +F++ +A A DLGY ++ + FLYPSE DL L+ FL ERLP E +D
Sbjct: 61 MSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPSDASEDADQPA 120
Query: 121 GKSKVLEDGDGRK----------------------------------------------- 180
G S + G +
Sbjct: 121 GDSAIFLRAIGSQIRDQLALPWVPPLLRTPKVQRLQGSALQQPFHSSRLVLPELNSSGEL 180
Query: 181 -------------------ETKADTLKCHYVS-----------GQSDAIDTA-------D 240
+ +A +L H+ S G D + A D
Sbjct: 181 WEFQASPLLLPAPTQVPQLQGRAASLLEHHASQLCQHVNRDCPGDEDRVRWASRVPSQED 240
Query: 241 SVFTHQKVENKLSDLNIIAEETKSSDSIVGRLSDSGETAMVDNLVNAPKYQSEVSGNESV 300
S Q++ +L + + + + V L + +T + PK S + +E
Sbjct: 241 SRAPQQRLHKQLIEHLRQSWGPLGAPTQVRDLGEMLQTWGARAMTGVPK-GSRFTHSEKF 300
Query: 301 ---------AVQGNNGQVSISRHEVSSYIQKNDEDQEIRP--------LEEVSTKASELE 360
A Q + + R E + + E + +R +EEV L
Sbjct: 301 TFHLEPQVQAAQVADVPATSQRLEQDTRAAQEQELESLREQLASVNHNIEEVEADMKTLG 360
Query: 361 HLLVELE-----------------RLKAATGIVFDDNRSIEVHLQELEEQISSRKLNLLA 420
LV++E RLK+ T + D + +L +L+ + S L+
Sbjct: 361 INLVQVETECRQSELSVAEQEQALRLKSRTVELLPDGAA---NLAKLQLVVESSAQRLIH 420
Query: 421 AKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREEGNYN 480
S W+ + L + R+L+ ++ +L +++E + E RR+EE
Sbjct: 421 LASQWEKHRVPLLAEYRHLRRLQDCRELESSRRLAEIQELHHSVRAAAEEARRKEEVYKQ 480
Query: 481 LSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLHRTY 498
L +EL+ PK SR +Y R+ EI N RKQ +I +IL +T+ELQ E N++ +L RT+
Sbjct: 481 LVSELETLPKDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTF 540
BLAST of CmaCh16G009510.1 vs. ExPASy Swiss-Prot
Match:
Q28G12 (Coiled-coil domain-containing protein 22 OS=Xenopus tropicalis OX=8364 GN=ccdc22 PE=2 SV=1)
HSP 1 Score: 123.6 bits (309), Expect = 6.3e-27
Identity = 154/629 (24.48%), Postives = 261/629 (41.49%), Query Frame = 0
Query: 1 MEESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDS 60
MEE IL++SL+ G VP DV SIR+ L+ + L I+ + LP
Sbjct: 1 MEEVDRILIHSLRSCGTEVPEDVQSIRQFNTELIVEAVVRCLRVINPSLGATLSHVLPPG 60
Query: 61 VADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSD------- 120
++ +F+I T +A A +DLGY G++ + FLY SE D+ L+ FL E+LP S
Sbjct: 61 MSARFRIGTSLAQACQDLGYPGEVGYQTFLYSSEPDIRALLIFLAEKLPRDSPEDAHQPA 120
Query: 121 GKSKVLEDGDG---------------------RKETKADTLKCHYVSGQSDAID-TADSV 180
GKS +L+ R+ + L + S A D T S+
Sbjct: 121 GKSALLQREIAATIKRQLSLPWLPSSCRICALRRSQNSCRLHRFHAQPLSLATDPTLKSI 180
Query: 181 FTHQK---------VENKLSDLNIIA-----------------EETKSSDSIVGRLSDSG 240
+K V ++L L +A + S + RLS
Sbjct: 181 PDERKEYWQCYLPSVTSQLPHLPSVAASLLERNTSELSAKQEWDAEWKSQGLASRLSPED 240
Query: 241 ETA--------------------MVDNLVNAPKYQSEVSGNESVAVQGNNGQVSISR--- 300
+ + +N + + Q ++ + G + Q SR
Sbjct: 241 YRSRKRQRLQKRIQEQLRQCAQLLAENHLPSSSSQDLTDMLKAFNLDGGSDQKKGSRFTR 300
Query: 301 ------------------------------------HEVSSYIQKNDE-DQEIRPLEE-- 360
E+SS ++ D +QEIR L E
Sbjct: 301 TQRFTYQQDPHTLKEQMQRAAEILPKKDAQDTDAEQQELSSLQEQIDSIEQEIRGLSESN 360
Query: 361 ---------VSTKASELEHLLVELERL----KAATGIVFDDNRSIEVHLQELEEQISSRK 420
V + +E+ E E++ K A ++ D + ++ V LQ L + S R
Sbjct: 361 KRLQLTVSQVEGEVNEMRQSCEEKEKIVRVKKRAVELLPDADNNL-VKLQALVDASSHRM 420
Query: 421 LNLLAAKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRRE 480
NL+ W++ + L + R L+ ++ ++ ++ + + E +R+E
Sbjct: 421 ANLVGQ---WESHQVRLSEEYRELKRVQQEQEDESSRWMKDAKDLYEKIRGAADEAKRKE 480
Query: 481 EGNYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQER 498
E L +E + PK+ SR +Y R+ EI N +KQ +I +IL +T+ELQ E NN+ +
Sbjct: 481 ELYKQLLSEYESLPKEVSRAAYTQRILEIVSNIKKQKEEITKILSDTKELQKEINNLTGK 540
BLAST of CmaCh16G009510.1 vs. TAIR 10
Match:
AT1G55830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530). )
HSP 1 Score: 357.1 bits (915), Expect = 2.4e-98
Identity = 227/508 (44.69%), Postives = 321/508 (63.19%), Query Frame = 0
Query: 2 EESQEILLNSLQKSGVSVPPDVSSIRKLTPPLLFSICAQVLNRIHGQTQIPYATSLPDSV 61
EES++IL+ +L +SGVS+P D +S+ + TP L SICAQ+LN I ++ LPDS+
Sbjct: 3 EESRDILMTTLIESGVSIPGDFTSVSEFTPEALVSICAQLLNLI--DPSASFSDELPDSL 62
Query: 62 ADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSDGKSKVLED 121
++F+ICT+IA ++K+LGYI DMS++KFL+PSE+D Y+L+RFLVERL E+S+G+ K L
Sbjct: 63 PERFRICTDIAHSVKNLGYINDMSYYKFLHPSEDDSYRLVRFLVERLSEISEGR-KTLTA 122
Query: 122 GDGRKETKADTLKCHYVSGQSDAIDTADSVFTH--QKVENKLSDLNIIAEETKSSDSIVG 181
GD K +T + +S + D F QKVE L DL + +E++ SSDS+
Sbjct: 123 GDIASRPKMETFR--DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSSDSLAK 182
Query: 182 RLSDSGETAMVDNLVNAPKYQSEVSGNESVAVQGNNGQVSISRHEVSSY---IQKNDEDQ 241
S A VD + S+ + + V+ + SR E +SY + N E
Sbjct: 183 NTS-----ANVD-------FSSQKTDDPVTDVRSDLSLRDSSRCEENSYEDPFETNYETV 242
Query: 242 EIRP-----LEEVSTKASELEHLLVELERLKAATGIVFDDNRSIEVHLQELEEQISSRKL 301
E++ LEE+ + +S+L L ELE L+ A + DD + +L++L +Q+ ++
Sbjct: 243 ELQNQHDVLLEELESGSSQLCSLESELELLQMAAERLLDDKKPGGSYLEQLNQQLVVKRC 302
Query: 302 NLLAAKSGWDAEKELLENKRRNLQESLCASNPKAPEKLQKLREFELEKQLIESEIRRREE 361
N++ K WD + LE K+ L + L P+A EK KLR+ EL+ Q + SEI++RE+
Sbjct: 303 NIMDLKKQWDDVRLTLETKKLLLLDQLHVEEPEAKEKFHKLRKTELDLQSLSSEIQKRED 362
Query: 362 GNYNLSTELKKQPKQASRRSYIDRVKEITKNSRKQDADIDRILKETRELQLESNNIQERL 421
NL EL++QPK A R+SYI +KEITKNSRK D DI RI ETRELQLE N+IQERL
Sbjct: 363 ERCNLYNELERQPKAAPRKSYIHGIKEITKNSRKLDTDIQRISGETRELQLEKNSIQERL 422
Query: 422 HRTYAIVDELVLREAKKEGIGKKAHKLLTSIHENFGEISNKILSTDRLRRETAEYEKKIA 481
HR+YA+VDE+V RE KK+ ++ +KLLTSIH F +IS KIL TDR RRET +YEKK+
Sbjct: 423 HRSYAVVDEMVTREVKKDPAVRQVYKLLTSIHSIFEQISEKILMTDRFRRETVDYEKKLG 482
Query: 482 ASASRSLDFNKLQADLDAIRKENSCLEQ 500
+ +R + KLQADLDAIRKEN L++
Sbjct: 483 SITARGMSLEKLQADLDAIRKENESLKK 493
BLAST of CmaCh16G009510.1 vs. TAIR 10
Match:
AT1G55830.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530); Has 10940 Blast hits to 7289 proteins in 653 species: Archae - 228; Bacteria - 791; Metazoa - 6174; Fungi - 805; Plants - 342; Viruses - 19; Other Eukaryotes - 2581 (source: NCBI BLink). )
HSP 1 Score: 271.9 bits (694), Expect = 1.0e-72
Identity = 184/422 (43.60%), Postives = 257/422 (60.90%), Query Frame = 0
Query: 88 KFLYPSEEDLYKLIRFLVERLPEVSDGKSKVLEDGDGRKETKADTLKCHYVSGQSDAIDT 147
+FL+PSE+D Y+L+RFLVERL E+S+G+ K L GD K +T + +S +
Sbjct: 6 QFLHPSEDDSYRLVRFLVERLSEISEGR-KTLTAGDIASRPKMETFR--DISDDMMVNED 65
Query: 148 ADSVFTH--QKVENKLSDLNIIAEETKSSDSIVGRLSDSGETAMVDNLVNAPKYQSEVSG 207
D F QKVE L DL + +E++ SSDS+ S A VD + S+ +
Sbjct: 66 KDETFDMHIQKVEAVLKDLTMTSEKSHSSDSLAKNTS-----ANVD-------FSSQKTD 125
Query: 208 NESVAVQGNNGQVSISRHEVSSY---IQKNDEDQEIRP-----LEEVSTKASELEHLLVE 267
+ V+ + SR E +SY + N E E++ LEE+ + +S+L L E
Sbjct: 126 DPVTDVRSDLSLRDSSRCEENSYEDPFETNYETVELQNQHDVLLEELESGSSQLCSLESE 185
Query: 268 LERLKAATGIVFDDNRSIEVHLQELEEQISSRKLNLLAAKSGWDAEKELLENKRRNLQES 327
LE L+ A + DD + +L++L +Q+ ++ N++ K WD + LE K+ L +
Sbjct: 186 LELLQMAAERLLDDKKPGGSYLEQLNQQLVVKRCNIMDLKKQWDDVRLTLETKKLLLLDQ 245
Query: 328 LCASNPKAPEKLQKLREFELEKQLIESEIRRREEGNYNLSTELKKQPKQASRRSYIDRVK 387
L P+A EK KLR+ EL+ Q + SEI++RE+ NL EL++QPK A R+SYI +K
Sbjct: 246 LHVEEPEAKEKFHKLRKTELDLQSLSSEIQKREDERCNLYNELERQPKAAPRKSYIHGIK 305
Query: 388 EITKNSRKQDADIDRILKETRELQLESNNIQERLHRTYAIVDELVLREAKKEGIGKKAHK 447
EITKNSRK D DI RI ETRELQLE N+IQERLHR+YA+VDE+V RE KK+ ++ +K
Sbjct: 306 EITKNSRKLDTDIQRISGETRELQLEKNSIQERLHRSYAVVDEMVTREVKKDPAVRQVYK 365
Query: 448 LLTSIHENFGEISNKILSTDRLRRETAEYEKKIAASASRSLDFNKLQADLDAIRKENSCL 500
LLTSIH F +IS KIL TDR RRET +YEKK+ + +R + KLQADLDAIRKEN L
Sbjct: 366 LLTSIHSIFEQISEKILMTDRFRRETVDYEKKLGSITARGMSLEKLQADLDAIRKENESL 412
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
B0WTU5 | 2.6e-28 | 22.94 | Coiled-coil domain-containing protein 22 homolog OS=Culex quinquefasciatus OX=71... | [more] |
P86182 | 4.4e-28 | 24.68 | Coiled-coil domain-containing protein 22 OS=Rattus norvegicus OX=10116 GN=Ccdc22... | [more] |
O60826 | 5.7e-28 | 25.60 | Coiled-coil domain-containing protein 22 OS=Homo sapiens OX=9606 GN=CCDC22 PE=1 ... | [more] |
Q9JIG7 | 7.4e-28 | 24.52 | Coiled-coil domain-containing protein 22 OS=Mus musculus OX=10090 GN=Ccdc22 PE=1... | [more] |
Q28G12 | 6.3e-27 | 24.48 | Coiled-coil domain-containing protein 22 OS=Xenopus tropicalis OX=8364 GN=ccdc22... | [more] |
Match Name | E-value | Identity | Description | |
AT1G55830.2 | 2.4e-98 | 44.69 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT1G55830.1 | 1.0e-72 | 43.60 | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 ... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh16G009510.1:exon:335 | CmaCh16G009510.1:exon:335 | exon |
CmaCh16G009510.1:exon:336 | CmaCh16G009510.1:exon:336 | exon |
CmaCh16G009510.1:exon:337 | CmaCh16G009510.1:exon:337 | exon |
CmaCh16G009510.1:exon:338 | CmaCh16G009510.1:exon:338 | exon |
CmaCh16G009510.1:exon:339 | CmaCh16G009510.1:exon:339 | exon |
CmaCh16G009510.1:exon:340 | CmaCh16G009510.1:exon:340 | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh16G009510.1:five_prime_utr | CmaCh16G009510.1:five_prime_utr | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh16G009510.1:cds | CmaCh16G009510.1:cds | CDS |
CmaCh16G009510.1:cds | CmaCh16G009510.1:cds_2 | CDS |
CmaCh16G009510.1:cds | CmaCh16G009510.1:cds_3 | CDS |
CmaCh16G009510.1:cds | CmaCh16G009510.1:cds_4 | CDS |
CmaCh16G009510.1:cds | CmaCh16G009510.1:cds_5 | CDS |
CmaCh16G009510.1:cds | CmaCh16G009510.1:cds_6 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmaCh16G009510.1:three_prime_utr | CmaCh16G009510.1:three_prime_utr | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
CmaCh16G009510.1 | CmaCh16G009510.1-protein | polypeptide |