CmaCh16G006850.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G006850.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr16: 3565805 .. 3569087 (-)
Sequence length504
RNA-Seq ExpressionCmaCh16G006850.1
SyntenyCmaCh16G006850.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAAAGAAAGGTAAAAAGGAGGGTTTATGCAGGCAATACTCTTTCTCTCATTTGCATGAAATGGAGGGATACCCAAAAAATATGGCTTTAATATCACTCCTTTTTAGATCTTTTTTTTTTTCATTTATTTGATTGAAAAATGATTATCTTTTTCACTTCAATCATACCCATCCTCTTCACCTTTCATATTAAATTTCGAGTCCTCAAAAAGAGGCATCATCACACACACCTACACTAATGTCTACCCTTCTTCCTCTTTTCTTTTTTTTTTACCCAAAAAAAATTAAATCTTTTCATTGATAGTAAGGTTTATACATACAAATCAACCGTACAACTATATTTTTACTGATAGTAAGAAATTTTTAGGAGTCTAGAAAAGGATGTTACCTTTTGATCACGAGAAATCCCAACCCTTCTTCTTGCAACACATAGACATGGGAAATGGGTAGGGAGTAGGGAGTGTGTGTGTGTGTGTATGATGGTGAGTGCAATGATGGTGTTTTCTTTGTTGTATGAACCCACAATGCCAACACACAAACACCTAAAGATAGAAAGAGAAAAGGAGATGATAATGTCAAAGTGGCAAAGGGCAAAGGGCAAAGGGCAAAGGCCTCTCATTTTGAGCCTAATATTCAAAAGATACACAACTTTTGGTTGCCCCACATAAAAAACATGGCCATGCTAAAGCCAAACCAAGCAAACAAGCTGACAAAGTTTTGCGATTAACAAAGAAAAACTTATCCCTTTGCATACGTTTCTCTATCAAAAATTGTGTCAGATATGGCCTTATATATTCCCTCCTACTCATTCTCAGATTTTCTCATCCACACAACATTTTGTGTGTATTATTGACGAGTAACTTAATGTTAACCGTATTAAGGTAACATGTGTATGTTCGAACCATTCGTACTATCATAGTACATCGTCTTAACCATGTTGACAAAAACATTGATATCTCAAGTTTATAGAAATTAGAGTAATTCCGTAAGTGATTTTAATTTGATATATGAATATATGGTTAATGTTATAGATATGTTAGTGAAAATTTGTCATTTGAAGCCGCAACTTTAGAAGTAACAAAAAGAGAAGCAACGAATGGAGTGAAAAAATCCGAGCGGAAAAGAGGTTTTCTCACTTCTTTCTATCATTCAAAACTGTTTATGATTGAATGAGTTGCTGCATTGGGATTAGGGGTATTTTTTTTCTAGGGAGACCCGCCTCGTGTAGTGAAACAGAGTGTGAATGGAAAAAATTATCTATCGGGGACGGAGAATATATTCTATGTCCCCACCCTGTTAGCTTTTTATATATATTCTTGATTTATTAACAGTAATTATATTAAATTTAATCATATATGAACTCGGTTTAAGAATATACTTTTAAAATTTATATTTTATCTTGAAAATTAGCTATTTAATTTAAAATTATAAAAATCAAAATTTAATAAAGTTCCATAATTTTATAATTTTAAATTGGGATCAAGATTACAAAAAGTAAAATTTAAAGAACAAAATAGTCAATGACAACATTATGACTAAGGATCTTAATTATTGGATCCTTTTTAGAGTTAAGATAAAATATTTACCATATTCATTAAATATTTTTATTAAATTCTTCCACAAATGTGACATTATAATAAATATAAATTATTGTCCTAAAAATAAAATAAATAACGTATAAAAATAAGAATTAGACTATATTATAATATTTAATTTAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTAGAATTATCAAAGCATAACAGATGGCAAATAAAAAAAAATTCTTATTTCCCTAATTTATATATTCCCAAATCAGAATTTCTTCAGCACCATTCACAAGTTTTAAAATATTTTTTAATTTTTTATTTATTTAATGTTATTATTCTTTATTCCAATATTGTAGAATCCAAATAAGCTAAAGTTTTGTACGAACTGAAGTTTGATATTACATACATGGCTGTACATCATTATTTTGAGATGCGTATTGCAAAAGCAACCATTTACGAGTATATTGGGAATAATATACTAAAATATCATCCGTTTAGCTAGCTCTGATTTTTTAGTATAGAGCTTAAACTGAACTCGAGATCCAAGTCTAACTTTATATTGAGTAGCTCGGGAGAGTAGACTCTATTAGCTTGGGCAAAGATGGGGTAGCTCAGTGTCATAATCTCACTCTTATGGCAGCAGGACAATGATTGTGTGACATTTTGTTCTAACCCAATAAACAAGTCAATCGTGTGAAAATTCCAATTTGTAGACAACTCGAACTTATGATCGAGGCTCGAGTCACGTTTGCGAGAAAATGTTAACATCTCTCTATAGTGCATTCTGGGGCATCTCGGCTCCAGTGGATGCGAAAGTAAAGGGATTTGGAACAGGTATGCGAGCAAGCATGATTGGGACATCCGATATGCGATCACATGCAACATGGCTTAGACAAGCATGGTCATTATCACGTTTTAATTAGGAATCTCAATTTTAAATTGGGTTTGTAGGGTGACTAAGCAATATTGAGGATAATTAAGCAAATTTGGAGTGTTTAAATATTGTGGATGACTTAGCAATAATACTAGTATGATTAGACACCACTAATGGTATCGTGTGCTATTCTTTTCCGTAACTTTTGACTTTGATATATGTTCATACATCATTAAGTGTATATATATATATATATTATATATCCTAACCAACTAAAACATTAAGATAAACTTATACACCAATAAACCCGAAAGTTGAGGAATCAAAATGAACATCTGAAAAGTTCAGGGATTAAAATGAAATATTACTAAAAGTTCGAAAATCAAAATGATATTAAAGACATAATAACGTGCTTGAAAAAATGTAGCCTCTTTAGCTTATTATAAAATCAAAGACTCAAAAACAAGGGTTCCACACCTTAGCTGACCTCTTTCTTTAGGATGGTCCACGTAGAAAATCTAGGTCGGTCCTTCATTCATTTGTCAGAGGTGTGGATAACGAGGCGACATTTTCACAAAAGCATATCAACAAATATAAATTTACTATCCTTGATCAAATCTTTGTATCGACTATCATGGCGTATCTCGATTATGGTGATTTTAGGGTTGATGCCAAATCGACTATATAATCCAAATTTTCTTCGATCAGTATTGTTTGGTCTCTGAGTTGTAAGTACTCGACCATAAACCAACCGTGATTGAGTAATGGTAAAGGAGTTGGTGGGTCCAAAGAGAGATGAAAAAAAAAATGATGGCGTTGATTGAATAGAAGGTTAG

mRNA sequence

ATGTTAAAAGAAAGATATGTTAGTGAAAATTTGTCATTTGAAGCCGCAACTTTAGAAGTAACAAAAAGAGAAGCAACGAATGGAGTGAAAAAATCCGAGCGGAAAAGAGGGAGACCCGCCTCGTGTAGTGAAACAGAGTAGCTTAAACTGAACTCGAGATCCAAGTCTAACTTTATATTGAGTAGCTCGGGAGAGTAGACTCTATTAGCTTGGGCAAAGATGGGGTAGCTCAGTGTCATAATCTCACTCTTATGGCAGCAGGACAATGATTGTGTGACATTTTGTTCTAACCCAATAAACAAGTCAATCGTGTGAAAATTCCAATTTGTAGACAACTCGAACTTATGATCGAGGCTCGAGTCACGTTTGCGAGAAAATGTTAACATCTCTCTATAGTGCATTCTGGGGCATCTCGGCTCCAGTGGATGCGAAAGTAAAGGGATTTGGAACAGGAATCTCAATTTTAAATTGGGTTTTATTGTTTGGTCTCTGAGTTAAGGTTAG

Coding sequence (CDS)

ATGTTAAAAGAAAGATATGTTAGTGAAAATTTGTCATTTGAAGCCGCAACTTTAGAAGTAACAAAAAGAGAAGCAACGAATGGAGTGAAAAAATCCGAGCGGAAAAGAGGGAGACCCGCCTCGTGTAGTGAAACAGAGTAG

Protein sequence

MLKERYVSENLSFEAATLEVTKREATNGVKKSERKRGRPASCSETE
Homology
The following BLAST results are available for this feature:
BLAST of CmaCh16G006850.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh16G006850.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..46

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh16G006850CmaCh16G006850gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G006850.1:exon:1116CmaCh16G006850.1:exon:1116exon
CmaCh16G006850.1:exon:1117CmaCh16G006850.1:exon:1117exon
CmaCh16G006850.1:exon:1118CmaCh16G006850.1:exon:1118exon
CmaCh16G006850.1:exon:1119CmaCh16G006850.1:exon:1119exon
CmaCh16G006850.1:exon:1120CmaCh16G006850.1:exon:1120exon
CmaCh16G006850.1:exon:1121CmaCh16G006850.1:exon:1121exon
CmaCh16G006850.1:exon:1122CmaCh16G006850.1:exon:1122exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G006850.1:three_prime_utrCmaCh16G006850.1:three_prime_utr_4three_prime_UTR
CmaCh16G006850.1:three_prime_utrCmaCh16G006850.1:three_prime_utr_3three_prime_UTR
CmaCh16G006850.1:three_prime_utrCmaCh16G006850.1:three_prime_utr_2three_prime_UTR
CmaCh16G006850.1:three_prime_utrCmaCh16G006850.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh16G006850.1:cdsCmaCh16G006850.1:cds_4CDS
CmaCh16G006850.1:cdsCmaCh16G006850.1:cds_3CDS
CmaCh16G006850.1:cdsCmaCh16G006850.1:cds_2CDS
CmaCh16G006850.1:cdsCmaCh16G006850.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh16G006850.1CmaCh16G006850.1-proteinpolypeptide