CmaCh15G007250.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G007250.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 3519629 .. 3521588 (-)
Sequence length645
RNA-Seq ExpressionCmaCh15G007250.1
SyntenyCmaCh15G007250.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACGTCAACAAATATACTCGGATCCTCCACGATGACGCTGACATCTGGTGATCTACAACCATCTGACGGTTCATATTCATCATTTCGAGCCACTCAATCGGAATCTGGCCGCTTAAACGTCCAAGTTCATCGTCGGCGGACACACGACTGGTTCAGTTTTCCAATAACGCATTCGGAGAGGTTTGACTTTTGGGAAAAGATGAACTCCGATTTGACTCAATTTGTTTGGATTCACTGCGACTGTTTTAGCAGCAGCCCTAATTTCGTAACATTAGTTTCGATTTGGAGCGACGAATGGGGAGTATCACAGAGAAATAAGGGCGCGTTTTCGTGGCGGCCGAACAGAGCGGTAAGATCTGGACACATGGAAACTCCCTCTCTGATTTGATGATTACAGGAGAATAGCGGGATTTTCAAATTGTGATTATGCGGATTTGTTGTTTCATTGAATCTGGACGGAGTTTCAGCTATTGGGTGAGGTTGGGACTGGCTGTGAAGTTGTTTAGGAAAAGAAACCCTAGAAGGCGTCGAGTGTGGGGAACAAAAAGGTGGGAAACAGATTATGGACTTCAACGCTGATGGATTGGTATGTTTCCTTTTCATTTACATCTCTTCCTCTTCCCTTTTTCCATTTCTTTTCAATAGAATAATGGTGAACTTAGTGTTACTTTTTCCTTTCATCAACTTTTTTCCTTATGGTTTTCGTGACTGAGAAAAAGTGCCCAAGTGTGAATTGAAGGGAACAAGTTGACTTCTCAAAAGCCTTTATTATTTGTTTTCTCTCAATATTGATGAACTATTTTGAACTCCACTATGGATGGTTTGCACTAGAAGGGAAATAAGACCCGGTAGGCTCTTTTTACCCTTGATTATTCAGCTTCAAACCCAGCAATGCTGGCCATGTTTTTGAGTTTTGACTTACAATTTGCTCTCTCTTTGTTCTTTTTTGAACTTGTTGAGCTTTTGATGGTGCATTTTAGTGCATATGGGACAACCCCATCAGGTCCTACCATTTTAGGATGGACTCAGTTTCTTGGGAAGGAGGATTTTAGGCATATTCTCCTAAGGGAAATGTTCTATTACTACAATAATACATACTATTTCTATTCAAAATTTGGCATACTGCTGGGCATTGGCATGTAAGGTTCCATAAGTTATTCCCCATTGCTTGTATTTTAGTCATTTGTCCTCATCGAAGGGCTTACTTTCGACCATTGCGTTGAATTGGAACATTTGGTCCCATTGTTTGACTTTTGCTTGCTACTTCAATTCTACATTAAACCCCCCTCAAAATAATTGCTAGACAAATGCAAACTAAGACAGCTTGTGAAGAAAAGTCCGCATGGGCCTAACTGGTTTAGAGGATTCTTATGGATCTCTTTCACAAAGGTCTACTCGTTTGTGATTGGCTCACTGGGTGAAATTTCAACATTTCTTTATTGACTTGAAATCTTGTAACAGAAACTCTCACATATGCAAGCACTGCTGATATTTGTATACACCAATTGAATGGGTTTGTGAATCTCTTTTGCTGGTTTAAACTAAAGTTTAAACTGAAGTCCCGACGTACTTCTTGACGTTTAAATTCACCACATATAAATTGAAATTGCTTTTGATCATCCTTCTGTTTCAGCTTGAAAAGTTTGACTTGGAATCTCCCGAGATGTTATATTATAAAGAAGTTGGCCTATAAAACTCAGTTGAGAGTCTCCACCATTGCTTGTACGATTTGCTGTCCAAATCTTTTGTAAGCTTGGATTCAGTTTTCTCAGGTCTGAGCTTTGTCGTAGAGTTCTATTTTCTTAAGTGCACTGTTTCTCGAAACCGATTGAATGTTTTGTAGACTTAGTTTTTCCAGCTCCAGAACATTGAAGTTGACTGCGTGCTGCATCTGGTCTTCAGCTACCTTTATTAACTCTTCCATTGTTTTTTCTTATGTGTTTTCGTCGCCATAG

mRNA sequence

ATGAAAACGTCAACAAATATACTCGGATCCTCCACGATGACGCTGACATCTGGTGATCTACAACCATCTGACGGTTCATATTCATCATTTCGAGCCACTCAATCGGAATCTGGCCGCTTAAACGTCCAAGTTCATCGTCGGCGGACACACGACTGGTTCAGTTTTCCAATAACGCATTCGGAGAGGTTTGACTTTTGGGAAAAGATGAACTCCGATTTGACTCAATTTGTTTGGATTCACTGCGACTGTTTTAGCAGCAGCCCTAATTTCGTAACATTAGTTTCGATTTGGAGCGACGAATGGGGAGTATCACAGAGAAATAAGGGCGCGTTTTCGTGGCGGCCGAACAGAGCGAAGGCGTCGAGTGTGGGGAACAAAAAGGTGGGAAACAGATTATGGACTTCAACGCTGATGGATTGCTTGAAAAGTTTGACTTGGAATCTCCCGAGATGTTATATTATAAAGAAGTTGGCCTATAAAACTCAGTTGAGAGTCTCCACCATTGCTTGTACGATTTGCTGTCCAAATCTTTTACTTAGTTTTTCCAGCTCCAGAACATTGAAGTTGACTGCGTGCTGCATCTGGTCTTCAGCTACCTTTATTAACTCTTCCATTGTTTTTTCTTATGTGTTTTCGTCGCCATAG

Coding sequence (CDS)

ATGAAAACGTCAACAAATATACTCGGATCCTCCACGATGACGCTGACATCTGGTGATCTACAACCATCTGACGGTTCATATTCATCATTTCGAGCCACTCAATCGGAATCTGGCCGCTTAAACGTCCAAGTTCATCGTCGGCGGACACACGACTGGTTCAGTTTTCCAATAACGCATTCGGAGAGGTTTGACTTTTGGGAAAAGATGAACTCCGATTTGACTCAATTTGTTTGGATTCACTGCGACTGTTTTAGCAGCAGCCCTAATTTCGTAACATTAGTTTCGATTTGGAGCGACGAATGGGGAGTATCACAGAGAAATAAGGGCGCGTTTTCGTGGCGGCCGAACAGAGCGAAGGCGTCGAGTGTGGGGAACAAAAAGGTGGGAAACAGATTATGGACTTCAACGCTGATGGATTGCTTGAAAAGTTTGACTTGGAATCTCCCGAGATGTTATATTATAAAGAAGTTGGCCTATAAAACTCAGTTGAGAGTCTCCACCATTGCTTGTACGATTTGCTGTCCAAATCTTTTACTTAGTTTTTCCAGCTCCAGAACATTGAAGTTGACTGCGTGCTGCATCTGGTCTTCAGCTACCTTTATTAACTCTTCCATTGTTTTTTCTTATGTGTTTTCGTCGCCATAG

Protein sequence

MKTSTNILGSSTMTLTSGDLQPSDGSYSSFRATQSESGRLNVQVHRRRTHDWFSFPITHSERFDFWEKMNSDLTQFVWIHCDCFSSSPNFVTLVSIWSDEWGVSQRNKGAFSWRPNRAKASSVGNKKVGNRLWTSTLMDCLKSLTWNLPRCYIIKKLAYKTQLRVSTIACTICCPNLLLSFSSSRTLKLTACCIWSSATFINSSIVFSYVFSSP
Homology
[Close]
BLAST of CmaCh15G007250.1 vs. NCBI nr
Match: KAG7016536.1 (hypothetical protein SDJN02_21645 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-36
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0 

Query: 4   STNILGSSTMTLTSGDLQPSDGSYSSFRATQSESGRLNVQVHRRRTHDWFSFPITHSERF 63
           STNIL S+TMT T GDLQPSDGSYSSFRATQ ESGRLNVQVHR+R HDWFSFPITHSERF
Sbjct: 54  STNILRSTTMTPTFGDLQPSDGSYSSFRATQPESGRLNVQVHRQRRHDWFSFPITHSERF 113

Query: 64  DFWEKMNSDLTQFVWIHCDCFSSSP 89
           DFWEKMNSDLTQFVWIHCDCFSSSP
Sbjct: 114 DFWEKMNSDLTQFVWIHCDCFSSSP 138

[Close]
BLAST of CmaCh15G007250.1 vs. NCBI nr
Match: KAG6579013.1 (hypothetical protein SDJN03_23461, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-16
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 13 MTLTSGDLQPSDGSYSSFRATQSESGRLNVQVHRRRTHDWFSFPITHSERFDFWEKMNSD 72
          MT T GDLQPSDGSYSSFRATQ ESGRLNVQVHR+RTHDWFSFPITHSER +   +    
Sbjct: 1  MTPTFGDLQPSDGSYSSFRATQPESGRLNVQVHRQRTHDWFSFPITHSER-EIRARFRGG 60

Query: 73 LTQFVWI 80
           T+  W+
Sbjct: 61 QTERYWV 66

The following BLAST results are available for this feature:
BLAST of CmaCh15G007250.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G007250.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G007250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016536.11.3e-3691.76hypothetical protein SDJN02_21645 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6579013.12.6e-1671.64hypothetical protein SDJN03_23461, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh15G007250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh15G007250CmaCh15G007250gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh15G007250.1:exon:1048CmaCh15G007250.1:exon:1048exon
CmaCh15G007250.1:exon:1047CmaCh15G007250.1:exon:1047exon
CmaCh15G007250.1:exon:1046CmaCh15G007250.1:exon:1046exon
CmaCh15G007250.1:exon:1045CmaCh15G007250.1:exon:1045exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh15G007250.1:cdsCmaCh15G007250.1:cds_4CDS
CmaCh15G007250.1:cdsCmaCh15G007250.1:cds_3CDS
CmaCh15G007250.1:cdsCmaCh15G007250.1:cds_2CDS
CmaCh15G007250.1:cdsCmaCh15G007250.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh15G007250.1CmaCh15G007250.1-proteinpolypeptide