CmaCh14G016180.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACGTCTCTTTCAATGGCGGCATCCAAATTTCAAATTTCTGAAACCTAATAAGGCCACAACACAACCAAGAGCCTTAAATTTCCACTTTCTTCAATTTCAAGTAGATACTTTTCATTTCTTCATCTCTGCAATTCTTCTCATTCTCGCTATGGCCATGGCTCTCAGACCCATTGATAATGTTCCGCTGGTTACTCCAAAAATGCCGAAGAAACAAACCAATGTGGCGGCGGATCCAATCCAGAAGCGAAACGATGAGAATCAGAATCCGGTTCCTCCCTCTGCAGACGCCGCCATTGATTATGTTTCTTCTGAGAATCTGAAGCCCTTGACGAACCCTGATTCTAATGTCCTCGTCATTTTTTTTCATTTTTTTTGTTGTGCATTTCTTGCTTGTTTTCAGATCTGATCTTCGTTTTTGTTTCGTTGTTGTGTTAGGATTTCATTGAAGGATTGGATTCGAAAGATTGGGTGAAGGTCTGCGAATCGCTCAATAATTCTAGGCGTCTCGCGCTATTTCACTCGGATCTCTTGCTGCCCTCGTTGTAAGTGGAATATTCTCTGTTTGGGGGTTGGGGATTGGGATGGTGAAATTCTGGCGATTAATTTTCTTCCGATTGCATTGCAGAGAGAAAATTCTAGCGGTGCTGATTAAATCGATGAAAAACCCTAGAAGTGCTTTAATCAAGACCTCAATCATGGCTTCTTCTGACATTTTTAACTCGTTTGGCGATCTTTTACTCGACGCATCCACTAGCAATGCATTCGATCAATTGGTAAGATCTTGCAATTGAATTTGTCGAATCATTTTCTTTTGTGATCAATATCTGAATAGGAATTTCATTGATATCTGTTCCTAAACAATCAATTTTGCACTGGAAGATTAAACCCTAAACCCTAAACTATCAATTTTGTGGAAGAAAGATTAAAGGGAAATGTTGGATGAACAAGTTTTTATTGAGAGACTGATTATATGTGATTTTGATTGCTCAGCTGCTTCAATTACTTCTCAAAGCTTCTCAAGACAAAAAGTTTGTGTGTGAAGAAGCAGACAAGGCACTGAAAGCTCTTGTGCAATTCACGACTCCTCTGCCTCTGCTGCAGAAACTCCGGCCATATGTTTCCCATTCCAACCACAGAGTCAGAGCCAAAGCCGCCATTCCAATCTCTGATTGTGTCTCTAAGATGGTAAAAACCAAGGACAAAAACGCTTCTTTTTTGTTAGATTACACATCAATTGAAGAGGAGAACGAAACATTCTTTATAAAGGTCTTGAAACCTCTCCCTACCAGACGGTTTTAAGTGTCTTGAGGGGAAGCCCAAAAAAAAAAATCCAAACGGGAAAATACTTGCTATGTCTGATCCTTATCAATTTTGTCACAAAAATTGTGTTAGAAATCACTACTCTCCACAATGGTACGATATTGTATACTTTGAGCATAAACTCTCATGGTTTTGTTTTTTGTTTTCCCAAAAAGCCTCGTACTAATGGACATGTATTCCTTATTTATAAACCTATGATTATTCCCTAATTAGCTAACGTGTGACTCCTCCTAACCATCTTCAACTGGACTGGACTGATGTATTCGGATGCTGCCATTTTTTCTTCTTTTCAGGGTCCGGAAGAAATGAAGCAATATGGGATTGTTCCATTGCTTCAGATGGTCGCAGATTTGTTAAACGATAGGCTACCTGAGGCAAGGGAAGCAGCTCGGTGTATAGTGATGGGAATGTTCAAAGCATTGACAGAGAATGAAGAACAGAAACAGGAAGCTTGGCAAAGCTTTTGCCAAGCTAATCTGTCGCCAATTCATGCTCAGTCCTTGCTCAAAGTTGCTACCTCCTCTCAGTAGTAGCAAGCAAATATTGTGAAAGAGAGAGCTTTAGGAGTAAGGTTCTTCTTACACTACTCTTACTGTGCTTCCTTACAAATTAGCTCTTGTTCTCTTCTTTCCCTTCACCTTTGTTGGTGTGGAAGAAAGGCTGAAGACAATAATAAACAAGCTCTGTTATAAGCACATTTACCTGAGTAAAATATAAATAACATTTTGTTATTATTTTATCCGAATAGTTTTGTGGACAACCGACATTCACGATAGTA ACGTCTCTTTCAATGGCGGCATCCAAATTTCAAATTTCTGAAACCTAATAAGGCCACAACACAACCAAGAGCCTTAAATTTCCACTTTCTTCAATTTCAAGTAGATACTTTTCATTTCTTCATCTCTGCAATTCTTCTCATTCTCGCTATGGCCATGGCTCTCAGACCCATTGATAATGTTCCGCTGGTTACTCCAAAAATGCCGAAGAAACAAACCAATGTGGCGGCGGATCCAATCCAGAAGCGAAACGATGAGAATCAGAATCCGGTTCCTCCCTCTGCAGACGCCGCCATTGATTATGTTTCTTCTGAGAATCTGAAGCCCTTGACGAACCCTGATTCTAATGATTTCATTGAAGGATTGGATTCGAAAGATTGGGTGAAGGTCTGCGAATCGCTCAATAATTCTAGGCGTCTCGCGCTATTTCACTCGGATCTCTTGCTGCCCTCGTTAGAGAAAATTCTAGCGGTGCTGATTAAATCGATGAAAAACCCTAGAAGTGCTTTAATCAAGACCTCAATCATGGCTTCTTCTGACATTTTTAACTCGTTTGGCGATCTTTTACTCGACGCATCCACTAGCAATGCATTCGATCAATTGCTGCTTCAATTACTTCTCAAAGCTTCTCAAGACAAAAAGTTTGTGTGTGAAGAAGCAGACAAGGCACTGAAAGCTCTTGTGCAATTCACGACTCCTCTGCCTCTGCTGCAGAAACTCCGGCCATATGTTTCCCATTCCAACCACAGAGTCAGAGCCAAAGCCGCCATTCCAATCTCTGATTGTGTCTCTAAGATGGGTCCGGAAGAAATGAAGCAATATGGGATTGTTCCATTGCTTCAGATGGTCGCAGATTTGTTAAACGATAGGCTACCTGAGGCAAGGGAAGCAGCTCGGTGTATAGTGATGGGAATGTTCAAAGCATTGACAGAGAATGAAGAACAGAAACAGGAAGCTTGGCAAAGCTTTTGCCAAGCTAATCTGTCGCCAATTCATGCTCAGTCCTTGCTCAAAGTTGCTACCTCCTCTCAGTAGTAGCAAGCAAATATTGTGAAAGAGAGAGCTTTAGGAGTAAGGTTCTTCTTACACTACTCTTACTGTGCTTCCTTACAAATTAGCTCTTGTTCTCTTCTTTCCCTTCACCTTTGTTGGTGTGGAAGAAAGGCTGAAGACAATAATAAACAAGCTCTGTTATAAGCACATTTACCTGAGTAAAATATAAATAACATTTTGTTATTATTTTATCCGAATAGTTTTGTGGACAACCGACATTCACGATAGTA ATGGCCATGGCTCTCAGACCCATTGATAATGTTCCGCTGGTTACTCCAAAAATGCCGAAGAAACAAACCAATGTGGCGGCGGATCCAATCCAGAAGCGAAACGATGAGAATCAGAATCCGGTTCCTCCCTCTGCAGACGCCGCCATTGATTATGTTTCTTCTGAGAATCTGAAGCCCTTGACGAACCCTGATTCTAATGATTTCATTGAAGGATTGGATTCGAAAGATTGGGTGAAGGTCTGCGAATCGCTCAATAATTCTAGGCGTCTCGCGCTATTTCACTCGGATCTCTTGCTGCCCTCGTTAGAGAAAATTCTAGCGGTGCTGATTAAATCGATGAAAAACCCTAGAAGTGCTTTAATCAAGACCTCAATCATGGCTTCTTCTGACATTTTTAACTCGTTTGGCGATCTTTTACTCGACGCATCCACTAGCAATGCATTCGATCAATTGCTGCTTCAATTACTTCTCAAAGCTTCTCAAGACAAAAAGTTTGTGTGTGAAGAAGCAGACAAGGCACTGAAAGCTCTTGTGCAATTCACGACTCCTCTGCCTCTGCTGCAGAAACTCCGGCCATATGTTTCCCATTCCAACCACAGAGTCAGAGCCAAAGCCGCCATTCCAATCTCTGATTGTGTCTCTAAGATGGGTCCGGAAGAAATGAAGCAATATGGGATTGTTCCATTGCTTCAGATGGTCGCAGATTTGTTAAACGATAGGCTACCTGAGGCAAGGGAAGCAGCTCGGTGTATAGTGATGGGAATGTTCAAAGCATTGACAGAGAATGAAGAACAGAAACAGGAAGCTTGGCAAAGCTTTTGCCAAGCTAATCTGTCGCCAATTCATGCTCAGTCCTTGCTCAAAGTTGCTACCTCCTCTCAGTAG MAMALRPIDNVPLVTPKMPKKQTNVAADPIQKRNDENQNPVPPSADAAIDYVSSENLKPLTNPDSNDFIEGLDSKDWVKVCESLNNSRRLALFHSDLLLPSLEKILAVLIKSMKNPRSALIKTSIMASSDIFNSFGDLLLDASTSNAFDQLLLQLLLKASQDKKFVCEEADKALKALVQFTTPLPLLQKLRPYVSHSNHRVRAKAAIPISDCVSKMGPEEMKQYGIVPLLQMVADLLNDRLPEAREAARCIVMGMFKALTENEEQKQEAWQSFCQANLSPIHAQSLLKVATSSQ Homology
BLAST of CmaCh14G016180.1 vs. ExPASy Swiss-Prot
Match: Q6A070 (TOG array regulator of axonemal microtubules protein 1 OS=Mus musculus OX=10090 GN=Togaram1 PE=1 SV=3) HSP 1 Score: 74.7 bits (182), Expect = 1.9e-12 Identity = 63/218 (28.90%), Postives = 101/218 (46.33%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. ExPASy Swiss-Prot
Match: Q9Y4F4 (TOG array regulator of axonemal microtubules protein 1 OS=Homo sapiens OX=9606 GN=TOGARAM1 PE=1 SV=4) HSP 1 Score: 65.5 bits (158), Expect = 1.2e-09 Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. ExPASy TrEMBL
Match: A0A6J1IPY5 (uncharacterized protein LOC111479447 OS=Cucurbita maxima OX=3661 GN=LOC111479447 PE=4 SV=1) HSP 1 Score: 565.5 bits (1456), Expect = 1.3e-157 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. ExPASy TrEMBL
Match: A0A6J1GXL7 (uncharacterized protein LOC111457757 OS=Cucurbita moschata OX=3662 GN=LOC111457757 PE=4 SV=1) HSP 1 Score: 540.4 bits (1391), Expect = 4.6e-150 Identity = 282/294 (95.92%), Postives = 287/294 (97.62%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. ExPASy TrEMBL
Match: A0A5D3CW98 (Protein FAM179B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001050 PE=4 SV=1) HSP 1 Score: 482.3 bits (1240), Expect = 1.5e-132 Identity = 253/294 (86.05%), Postives = 268/294 (91.16%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. ExPASy TrEMBL
Match: A0A1S3AX30 (uncharacterized protein LOC103483845 OS=Cucumis melo OX=3656 GN=LOC103483845 PE=4 SV=1) HSP 1 Score: 482.3 bits (1240), Expect = 1.5e-132 Identity = 253/294 (86.05%), Postives = 268/294 (91.16%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. ExPASy TrEMBL
Match: A0A0A0L588 (TOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G154330 PE=4 SV=1) HSP 1 Score: 481.9 bits (1239), Expect = 1.9e-132 Identity = 252/294 (85.71%), Postives = 268/294 (91.16%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. NCBI nr
Match: XP_022979892.1 (uncharacterized protein LOC111479447 [Cucurbita maxima]) HSP 1 Score: 565.5 bits (1456), Expect = 2.8e-157 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. NCBI nr
Match: XP_022955914.1 (uncharacterized protein LOC111457757 [Cucurbita moschata]) HSP 1 Score: 540.4 bits (1391), Expect = 9.5e-150 Identity = 282/294 (95.92%), Postives = 287/294 (97.62%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. NCBI nr
Match: XP_023528215.1 (uncharacterized protein LOC111791196 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 539.7 bits (1389), Expect = 1.6e-149 Identity = 282/294 (95.92%), Postives = 287/294 (97.62%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. NCBI nr
Match: KAG6582210.1 (TOG array regulator of axonemal microtubules protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 536.6 bits (1381), Expect = 1.4e-148 Identity = 280/294 (95.24%), Postives = 286/294 (97.28%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. NCBI nr
Match: XP_008438886.1 (PREDICTED: uncharacterized protein LOC103483845 [Cucumis melo] >KAA0049497.1 protein FAM179B [Cucumis melo var. makuwa] >TYK16177.1 protein FAM179B [Cucumis melo var. makuwa]) HSP 1 Score: 482.3 bits (1240), Expect = 3.1e-132 Identity = 253/294 (86.05%), Postives = 268/294 (91.16%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. TAIR 10
Match: AT4G15830.1 (ARM repeat superfamily protein ) HSP 1 Score: 297.4 bits (760), Expect = 1.3e-80 Identity = 160/297 (53.87%), Postives = 218/297 (73.40%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. TAIR 10
Match: AT3G01450.1 (ARM repeat superfamily protein ) HSP 1 Score: 215.3 bits (547), Expect = 6.5e-56 Identity = 120/277 (43.32%), Postives = 179/277 (64.62%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. TAIR 10
Match: AT5G14790.1 (ARM repeat superfamily protein ) HSP 1 Score: 201.4 bits (511), Expect = 9.7e-52 Identity = 109/272 (40.07%), Postives = 178/272 (65.44%), Query Frame = 0
BLAST of CmaCh14G016180.1 vs. TAIR 10
Match: AT3G18530.1 (ARM repeat superfamily protein ) HSP 1 Score: 114.8 bits (286), Expect = 1.2e-25 Identity = 75/207 (36.23%), Postives = 118/207 (57.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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