CmaCh12G009010.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G009010.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	B3 domain-containing protein At2g31420-like
Location	Cma_Chr12: 6867264 .. 6867776 (+)
Sequence length	513
RNA-Seq Expression	CmaCh12G009010.1
Synteny	CmaCh12G009010.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGTTTCTCCATATCCATCGATGTCAAAGTGGCGCAATGCATTCTTTCTAATCACAACGCCGGACATGCCAACTCGGATGCGAAAGCAGATCGAGGAGATGCATGGATACAATCTTCAGTTGGTGATTCATAAGAAATTAATAGAAACTGATATGAACGAGAAAGATGGCCGTTTGTTTCTTATAATCAAGAAAATCTTATTCGATTTCATCACCCCAGACGAGGAGGAGCTCTTGAATGATGCAAACGGAGTCATGGAAGTCAAGATTCTTGATGAGGGTCAAAGGGTGAGCCCCATGTTCTTGACCAAAGGCAAGATTCAAGAACATGATGCATATTGTTTGACCACTCATTGGAATTCTTTTGTCGCCAAAAATTGCTTGAAAATTGGCCACCTTATCCAACTTTGGAGTTTCAGAAGAGTTCGACTCGTAGACATAGATAACGAAATATTCACCTCTGATCTTTACTTTGCGTTGAATACCATGGATGGTCGATGTTTTCTTTAG

mRNA sequence

ATGTCAGTTTCTCCATATCCATCGATGTCAAAGTGGCGCAATGCATTCTTTCTAATCACAACGCCGGACATGCCAACTCGGATGCGAAAGCAGATCGAGGAGATGCATGGATACAATCTTCAGTTGGTGATTCATAAGAAATTAATAGAAACTGATATGAACGAGAAAGATGGCCGTTTGTTTCTTATAATCAAGAAAATCTTATTCGATTTCATCACCCCAGACGAGGAGGAGCTCTTGAATGATGCAAACGGAGTCATGGAAGTCAAGATTCTTGATGAGGGTCAAAGGGTGAGCCCCATGTTCTTGACCAAAGGCAAGATTCAAGAACATGATGCATATTGTTTGACCACTCATTGGAATTCTTTTGTCGCCAAAAATTGCTTGAAAATTGGCCACCTTATCCAACTTTGGAGTTTCAGAAGAGTTCGACTCGTAGACATAGATAACGAAATATTCACCTCTGATCTTTACTTTGCGTTGAATACCATGGATGGTCGATGTTTTCTTTAG

Coding sequence (CDS)

ATGTCAGTTTCTCCATATCCATCGATGTCAAAGTGGCGCAATGCATTCTTTCTAATCACAACGCCGGACATGCCAACTCGGATGCGAAAGCAGATCGAGGAGATGCATGGATACAATCTTCAGTTGGTGATTCATAAGAAATTAATAGAAACTGATATGAACGAGAAAGATGGCCGTTTGTTTCTTATAATCAAGAAAATCTTATTCGATTTCATCACCCCAGACGAGGAGGAGCTCTTGAATGATGCAAACGGAGTCATGGAAGTCAAGATTCTTGATGAGGGTCAAAGGGTGAGCCCCATGTTCTTGACCAAAGGCAAGATTCAAGAACATGATGCATATTGTTTGACCACTCATTGGAATTCTTTTGTCGCCAAAAATTGCTTGAAAATTGGCCACCTTATCCAACTTTGGAGTTTCAGAAGAGTTCGACTCGTAGACATAGATAACGAAATATTCACCTCTGATCTTTACTTTGCGTTGAATACCATGGATGGTCGATGTTTTCTTTAG

Protein sequence

MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMHGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFITPDEEELLNDANGVMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVAKNCLKIGHLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGRCFL

Homology

[Close]

BLAST of CmaCh12G009010.1 vs. ExPASy Swiss-Prot
Match: Q9SIC7 (B3 domain-containing protein At2g31420 OS=Arabidopsis thaliana OX=3702 GN=At2g31420 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.9e-06
Identity = 34/125 (27.20%), Postives = 64/125 (51.20%), Query Frame = 0


Query: 24  MPTRMRKQIEEMHGYNLQLVIHKK-LIETDMNEKDGRLFLIIKKI-LFDFITPDE----- 83
           +P  + K + + +GY+ +L+I ++ L  TD+ +  G L + + K+   DF+T DE     
Sbjct: 60  IPDWLVKVMRKENGYDPKLIIKRRVLCTTDLRKNQGCLSMHLSKLEKSDFLTEDETRFLD 119

Query: 84  EELLNDANGVMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVAKNCLKIGHLIQ 142
           E+ L      ++V ++D       ++L K        Y L+  WN+ + K   K+  +I+
Sbjct: 120 EDFLKAKRDGLKVFLVDPESDKHVVYLKKWNGNTVWKYVLSHGWNNVIDKKIFKVNDVIE 179

[Close]

BLAST of CmaCh12G009010.1 vs. TAIR 10
Match: AT2G31420.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 52.4 bits (124), Expect = 4.2e-07
Identity = 34/125 (27.20%), Postives = 64/125 (51.20%), Query Frame = 0


Query: 24  MPTRMRKQIEEMHGYNLQLVIHKK-LIETDMNEKDGRLFLIIKKI-LFDFITPDE----- 83
           +P  + K + + +GY+ +L+I ++ L  TD+ +  G L + + K+   DF+T DE     
Sbjct: 60  IPDWLVKVMRKENGYDPKLIIKRRVLCTTDLRKNQGCLSMHLSKLEKSDFLTEDETRFLD 119

Query: 84  EELLNDANGVMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVAKNCLKIGHLIQ 142
           E+ L      ++V ++D       ++L K        Y L+  WN+ + K   K+  +I+
Sbjct: 120 EDFLKAKRDGLKVFLVDPESDKHVVYLKKWNGNTVWKYVLSHGWNNVIDKKIFKVNDVIE 179

[Close]

BLAST of CmaCh12G009010.1 vs. TAIR 10
Match: AT5G38490.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 42.4 bits (98), Expect = 4.4e-04
Identity = 33/116 (28.45%), Postives = 51/116 (43.97%), Query Frame = 0


Query: 41  QLVIHKKLIETDMNEKDGRLFLIIKKIL-FDFITP------------DEEELLNDANGVM 100
           +L+  + L ++D+N    RL +  +K++  DF+TP            DEE+  N   G +
Sbjct: 237 RLIFERTLFKSDVNSNLSRLLMPFQKLIRNDFLTPAECRAMQKDEDNDEEDDENIGVGTV 296

Query: 101 EV--KILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFVAKNCLKIGHLIQLWSFR 142
            V  +    G R     + K        Y L   WN  V  + LK+G  I LW+FR
Sbjct: 297 LVNQRFQKWGLRFKIWAMEKDSGHGTLNYTLNWGWNDVVKSSSLKVGDKISLWTFR 352

The following BLAST results are available for this feature:

BLAST of CmaCh12G009010.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIC7	5.9e-06	27.20	B3 domain-containing protein At2g31420 OS=Arabidopsis thaliana OX=3702 GN=At2g31...	[more]

BLAST of CmaCh12G009010.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31420.1	4.2e-07	27.20	Domain of unknown function (DUF313)	[more]
AT5G38490.1	4.4e-04	28.45	Domain of unknown function (DUF313)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005508	B3 domain-containing protein At2g31720-like	PFAM	PF03754	DUF313	coord: 24..125 e-value: 1.9E-9 score: 37.7
IPR005508	B3 domain-containing protein At2g31720-like	PANTHER	PTHR31541	B3 DOMAIN PLANT PROTEIN-RELATED	coord: 19..164
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 34..153 e-value: 4.1E-9 score: 38.2
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 44..141
None	No IPR available	PANTHER	PTHR31541:SF25	DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED	coord: 19..164

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh12G009010	CmaCh12G009010	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G009010.1:exon:214	CmaCh12G009010.1:exon:214	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G009010.1:cds	CmaCh12G009010.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh12G009010.1	CmaCh12G009010.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding