CmaCh12G008790.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008790.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Syntaxin-6_N domain-containing protein
Location	Cma_Chr12: 6646233 .. 6651834 (+)
Sequence length	1660
RNA-Seq Expression	CmaCh12G008790.1
Synteny	CmaCh12G008790.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTCAGTTCTTTTTATTAATTATTAGCTTTTTTTAGAAAGTGGGGTGGGGAATTGTGCAGGAAAGAATCAACAACGGAGAGAGCTCCATTGTTGTCTCACGTCTGTGTGAGCTTTGGCTCTTTGTATTCGTCTCTGTTCTTGCCTCGCTCAAGCACCGATCAGAGGAATTACTCAACGATCCAACACCTTTTTCTTTTTACTGCTACAGAATTTGATGTTCGGATTTTGATCTTTGAATTTCTACACCTTATTCTTCGTTGTTTCATCATCTTTGCTCTGTTTTTTCTCCCACAAATGTTAGATGCAAATCGCTTCGATTTGTGGAAGAAGGATGGGCTCTTTTCTGCCGCTGAGCAAGTCCAAGAATCCGCCGATACGTACGTTTTTCAATTTTCGTTTGATTTGGGGGTTTTTCCGCCGATGTCTGATTGATTTGTTGTGGAATTTTTTAGGATTCTGGAAATGGTTATGTGAGTTTGGAATTGTCTGTGTATTATATCTTTTTCGGTTGTTTTGTGTTCTTAATTTTAGTTTCTTCTTCTTCTTCCCTCTGTGTTTGTTTTTCAAGAGGATGAAGCTTATGTTCTGTGTTTTTGTTGAGTTTCTACAATAGTGATGGTTCATGATTCTAAATTAATCCAGCAACGAAGTTTTCTTCTCTGTTTGCTGCATTTGGGAAGGTGTCCTATGCTTACTGGGGTTTTGGGGGGAATCTACTGCTTTCTTAATTTGTTCAGCCATTCCTAGGCCATTAAATTTTAGCGCTGTCTGTGAGATCCCACATCAGTTGGAGTGGAGAATGAAGCATCGGTTGGAAGAGAACGAAGTATTCTTTATAATGGTGTGGAAATCTCTCCCTATGAGATAGTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAAGGAAAACTCAAAGAGGACAATATCTGCTAGCGGTGGGCATGTGCTGTTACATATAGTATTAGAGCCAGACACCAAGCAATGTGCCAGCGAGAAGGCTGAGCTCCGAAGGGGGTGGACACGAGGCGGTGTGTCAACAAAGATGTTGGGCCTAAAGGGGTGGATTGGGGGGTCCCACATCGATTGGAGAAGGGAATGAGTACTAGCCAAGAGGCTGGGCTCCGAAGGAGGTGGATTGTGAGAATCCACATCGGTTGAGGAGGAGAATTAAACAATCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGGTGCATTTTAAAAACCTTGAGGGGAAGTCCGAAAGGGAAAGCCCAAAGAAGACAATATCTGCTAGCGGTGGGCTTGGGTTGTGCCGTTACAAAGACTCTTTATTGCCTCTTTCTCCTGTATTGATGCTCCTATTGGTTTCTTATTTCAGAATGGAGTTTGCATTCAGGACATGGGTAAGAGAGAAACGGGAGTGGCTAAATTCAGATGATTTGGATGAACTCCGTCGGGAGGTACAAACGGCTCTTGGCACAGCCAAATGGCAGGTTGGATACTGAATTGAACTAAACTAATGCATCTGTTCTATCTTTTACTGCCATCATAAACTCTGATAAATCTTCCAAAATCCAATCGGATGGTAATTAGGATTCTTAAAATGATATGCACGAGTCATATTTTCTAGTGAAACAATGGTTATACACCGATTTATAATCATAATTCTGTGTTGTTTTTCCTGTCTTCAATTAGCTGGAAGAGTTTGAGAAAGCTGTCGGAGTTAGCTATCGTTCTAGAAGTGAAGAACATGCGTTGGAACGACATAGAATGTTTATTGCAGCCATTGGAAATCAAATTTCCCATGTTGAAGCTGTTTTAAGAGAATCTTATGACAAAGTTGGCAAGCGGCCTCTTCGATGGGTAAATCTAAATAAAGAAGAATGTAATGATTTGGCTGCATTTCTCTCTGGAATATCCCAAGTACCACATAGTGCGAAAACCGAATCCTCTGTGTGTAGGTCTTCAGCAAAAAGTTATACGTTTGAGACACGTGAACGAGCAACGGAAGAAATTAATCGTACTTCTTCCTGCAGCTCGAGTAATTCCTTTAAAATGAAGGGTGGAAAATTTGCTAATTCTGTAGATATGAAAGAAAGTCTTGGTAGAGTAGATGATGCACTATGCAAAATGGATACAACGACGAAGGCAAGACGAGCAAGCCCACCGACTGCTCCTGACCTGCAAATTGTAATTACGAATGAAAATCATGAAAAAAAACAGTCTGTTACGAGTTTAGAAGTTACAAAAAAAGGAAAATCGGGATCGGTCTTCTTGAAGAGAGGATGTGGAATATTTTCCCAGGTGAGCATTCAGGGAGCTGCTTGAATCTGGTAACGTGGTTCTGTTTGTTTGTTAGTTTTTAAATTTCTTTTCTGATAGGAAACAGAATTTTTAGTTGTTTTTTTTGCTGTTATCTATATAATGAAAGTGATATAGCTATAAGTTATTCTTGCAAGTGTGAGAGATCCCACATCGGTTGAAGAGGAGAACGAAACATTCCTTGTAAGGGTGTGGAAACCTCTCCCTAGGAGACGCGTTTTAAAACCTGGAGGGATGCCCGGAATAGAAAGCCCAAAAAGGACAATATCTGGTATCAGAACCAGGCACCGGGTGGTGTGCCAGCGAGGACGATGGACCCCCAAGGGGGGTGGATTGTGAGATCCCATATCGGTTGGAGAGGAGAACGAAACACTCCTTTATAAGAGTGTGAAAACCTCTCCCTAGCAGATGCGTTTTAAAACTTTGAGGAGAAGCCCAGAAGGGAAAGTCCAAATAGGACAATATTTGTTAACGGTGGGTTTGAGCTGTTACAAATGGTGTTAGAGCTAGGTACCAGGCAGTGTGCCAGCGAGGACGTTGGGCTCCTAAGAGGGGTTGATTGTGAGATCCTAATAAGGGCGTGGAAATCTCTCCCTATCAGACGCGTTTTAAAACCTTAAGGGGAAGCCCGAAAGGGAAAGACCAAATAGGACAATATCCGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCTAAGCACTAGGCAGTGTGCCAGTGAGGACGTTGGGCCCCTAAGAGGGGTAGATTGTGAGATCCCACATCGGTTGGAGAGGAGAACGGAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGATGCGTTTTAAAACCTTGAGGGAAAACCAAAAGGGAAAGCCCAAGTAGGACAATATGTGATAGCGGTGGGCTTGGATGGTTACAAAAAGGTTACCCATACTATTGTATGAAATTATGAGGCATGAACTCATATTCTTCCATTTTTTTTGCATTATGGTTTGAGAATAATATATCCCTTTCCAAATATTCATTGTAATTGTGCACTTATGGGTTCCAAATGAAATGTACCTGTAACTACATTTTCAGCTCTTCGGTTGGAGTCAGCAGCGACACATATACCGACCCTGGCATCTTCAGCTTACATGTTTTATTCCATTTACACTTGCTTTGGTGTTGACTCTATTCTTGATCGGTGAGTTTCTAATTTTCTCGAGGATACGAAGCATTCAAATTTTAGAACGTTACAAAATTTGGATTCAAGTTGAAGTATGTCATTTATACGTAGAGATTGGGTTCGATATCGTTATAAAGATTAACTGATATCTCCAATATCTTTTATAAATTTCCATAAAACAATCAAATCTCAATATGAATACAAATACTAATAACATATTGTAGAAGTAAAAATAACTTAATTATTAGTTCAAATAATTTTTATAAATTTTTTAATTTACCTATATGTTGTGACCAATGTTGATGTATCCGTAAAGTTAAAATTCTAGTTGTTCGAGTGTTTATATCAGTATAATTGTAATTTTGTAAGTATATTAGTTGTGTTGTTCTTCGTTGTCTTCTCTCACATGCTTCGCACTAAAGTTGATATTGATATCGACATCGATCTTTTAATCTTTGGTTATGAGATTTGTATGTACGTAAATGGCTTCGGTTTCCTTGTGCAAATCTTGCTGATGATGGTTTCCCTTGCAGTGCCCATTGTTTTTTACTCAGCTTGAGCTTCTAGTCCATTGTACACGCAACATTTTCGATCGTAACAGGTATACACTTATTTTTGTCTTAGAGCTTAATAAATTCCTCTCCATATTGTAAGTATTGGAATAATTTAAGAGAAATGTTATTGGTATTGTGCTATTGTAGCTGTTATTAGTCACCATCGAATCGTCGTTGAGGAACAAGAACTACGATTGCCCATTTCTTGAATGAGCAATCATCATAGACCACGAAACCTTTTTGATAGCCTTCGACCTGCTACCATGGCAGCCGAGCAAAAATCATGGAATCGAATCGAACAACATCCCTTAGCCTGTTCATAACTTGGAACTCTCTCAATTGGCTGGCCACTTCCTTCTAAACTCTAGCAGATGAGCCTTTTTTCCTACAAATTTTTCTAGGAACAAAGATGGAAAAACCCGCTTTCTTCCCTTCCGAAAACAAGATACATGGCTGGTTCTCCCTCTATTCCTTAATATCTTGTAACAACCCAAGCCCACCGCTAGCAAATGTTGTCTTCTTTGAGCTTTTTCTTCTAGGCTTCCCCTCAAGGTTTTAAACCCAAGCCCACCGCTAGCAAATATTGTCCTCTTTGGGCTTTTTCTTCTAGGCTTCCCCTCACGGTTTTAAAATGCATCTACTAGAGAGAGGTTTTCACACCCTTATAAGAAATGTTTCGTTCTCCTCTCCAACCAATGTGGGATCTCACAATCCACCCCCTTGAGGGCCCAACATCCTCACCGGCACACTGCCCGGTGTTTGACTTTGATACTAATTGTAACCGCCCAAGTCCATCGCTAGCCGATATTGTCCTCTTTGGATTTTCCATTATGTGCTTCCCCTCAAGGTTTTAAAACGCGTCTACTCGAGAGAGGTTTCCACACCCTTGTAAGAAGTGCTTTATTCTCCTCTCCAACCAATGTAAGATCTCACATATCTGATTACTCTAGTGAGTACACAAGAAGAAAGCCTCTACCTTCAAAAGACATTCTACTATCAAAACCCACAATTCACCGACCACCGGCTTCCCCATCACCAACCATTAACCATCTAACAAACCGTCTCTGTTCCAAACACGTGTGCACGTTTGAATCCTTTTCGAGTCCAGACTCATCCATCTGAAAGGAAGTGATCGTTGTTCAACCGTGATTCTTGAATTGATATTCATGATCAATGTATTACTTACATCCATTTTCAACCTCTGAATTGAGCCCATTATGTTTATTTTCATGAACTGGAGCTTCTCTACAGGTGTTGAACAGGCGTTTGGGAAATGATAACATAACACATTCATGTTCTTCTGAGCTCTTCCGTGCCATGCCTAACCTCAAAATTCATGAAAATAAGGTATGTATTCATTATTGTTGTGGCTGTAAAGTGCAAATGTCTGGATGAATTGTTAAATATTACATAGAACTTGCCAATGTAAATAAGGATTCAGGCTTTATGCAATTATTTATTTTGCCACCTCCCTAATACATAAATATGTGTTGATTTTCTCATTGATCTTGTTAGCTGCTGTGGATTAGTTTGGACCCATTTGATAATGTTCTCATTTTTCGTTTGTCGAAGAACTAGCTTATTTG

mRNA sequence

AATTTCAGTTCTTTTTATTAATTATTAGCTTTTTTTAGAAAGTGGGGTGGGGAATTGTGCAGGAAAGAATCAACAACGGAGAGAGCTCCATTGTTGTCTCACGTCTGTGTGAGCTTTGGCTCTTTGTATTCGTCTCTGTTCTTGCCTCGCTCAAGCACCGATCAGAGGAATTACTCAACGATCCAACACCTTTTTCTTTTTACTGCTACAGAATTTGATGTTCGGATTTTGATCTTTGAATTTCTACACCTTATTCTTCGTTGTTTCATCATCTTTGCTCTGTTTTTTCTCCCACAAATGTTAGATGCAAATCGCTTCGATTTGTGGAAGAAGGATGGGCTCTTTTCTGCCGCTGAGCAAGTCCAAGAATCCGCCGATACGATTCTGGAAATGGTTATAATGGAGTTTGCATTCAGGACATGGGTAAGAGAGAAACGGGAGTGGCTAAATTCAGATGATTTGGATGAACTCCGTCGGGAGGTACAAACGGCTCTTGGCACAGCCAAATGGCAGCTGGAAGAGTTTGAGAAAGCTGTCGGAGTTAGCTATCGTTCTAGAAGTGAAGAACATGCGTTGGAACGACATAGAATGTTTATTGCAGCCATTGGAAATCAAATTTCCCATGTTGAAGCTGTTTTAAGAGAATCTTATGACAAAGTTGGCAAGCGGCCTCTTCGATGGGTAAATCTAAATAAAGAAGAATGTAATGATTTGGCTGCATTTCTCTCTGGAATATCCCAAGTACCACATAGTGCGAAAACCGAATCCTCTGTGTGTAGGTCTTCAGCAAAAAGTTATACGTTTGAGACACGTGAACGAGCAACGGAAGAAATTAATCGTACTTCTTCCTGCAGCTCGAGTAATTCCTTTAAAATGAAGGGTGGAAAATTTGCTAATTCTGTAGATATGAAAGAAAGTCTTGGTAGAGTAGATGATGCACTATGCAAAATGGATACAACGACGAAGGCAAGACGAGCAAGCCCACCGACTGCTCCTGACCTGCAAATTGTAATTACGAATGAAAATCATGAAAAAAAACAGTCTGTTACGAGTTTAGAAGTTACAAAAAAAGGAAAATCGGGATCGGTCTTCTTGAAGAGAGGATGTGGAATATTTTCCCAGGTGAGCATTCAGGGAGCTGCTTGAATCTGCTCTTCGGTTGGAGTCAGCAGCGACACATATACCGACCCTGGCATCTTCAGCTTACATGTTTTATTCCATTTACACTTGCTTTGGTGTTGACTCTATTCTTGATCGTGCCCATTGTTTTTTACTCAGCTTGAGCTTCTAGTCCATTGTACACGCAACATTTTCGATCGTAACAGGTGTTGAACAGGCGTTTGGGAAATGATAACATAACACATTCATGTTCTTCTGAGCTCTTCCGTGCCATGCCTAACCTCAAAATTCATGAAAATAAGGTATGTATTCATTATTGTTGTGGCTGTAAAGTGCAAATGTCTGGATGAATTGTTAAATATTACATAGAACTTGCCAATGTAAATAAGGATTCAGGCTTTATGCAATTATTTATTTTGCCACCTCCCTAATACATAAATATGTGTTGATTTTCTCATTGATCTTGTTAGCTGCTGTGGATTAGTTTGGACCCATTTGATAATGTTCTCATTTTTCGTTTGTCGAAGAACTAGCTTATTTG

Coding sequence (CDS)

ATGTTAGATGCAAATCGCTTCGATTTGTGGAAGAAGGATGGGCTCTTTTCTGCCGCTGAGCAAGTCCAAGAATCCGCCGATACGATTCTGGAAATGGTTATAATGGAGTTTGCATTCAGGACATGGGTAAGAGAGAAACGGGAGTGGCTAAATTCAGATGATTTGGATGAACTCCGTCGGGAGGTACAAACGGCTCTTGGCACAGCCAAATGGCAGCTGGAAGAGTTTGAGAAAGCTGTCGGAGTTAGCTATCGTTCTAGAAGTGAAGAACATGCGTTGGAACGACATAGAATGTTTATTGCAGCCATTGGAAATCAAATTTCCCATGTTGAAGCTGTTTTAAGAGAATCTTATGACAAAGTTGGCAAGCGGCCTCTTCGATGGGTAAATCTAAATAAAGAAGAATGTAATGATTTGGCTGCATTTCTCTCTGGAATATCCCAAGTACCACATAGTGCGAAAACCGAATCCTCTGTGTGTAGGTCTTCAGCAAAAAGTTATACGTTTGAGACACGTGAACGAGCAACGGAAGAAATTAATCGTACTTCTTCCTGCAGCTCGAGTAATTCCTTTAAAATGAAGGGTGGAAAATTTGCTAATTCTGTAGATATGAAAGAAAGTCTTGGTAGAGTAGATGATGCACTATGCAAAATGGATACAACGACGAAGGCAAGACGAGCAAGCCCACCGACTGCTCCTGACCTGCAAATTGTAATTACGAATGAAAATCATGAAAAAAAACAGTCTGTTACGAGTTTAGAAGTTACAAAAAAAGGAAAATCGGGATCGGTCTTCTTGAAGAGAGGATGTGGAATATTTTCCCAGGTGAGCATTCAGGGAGCTGCTTGA

Protein sequence

MLDANRFDLWKKDGLFSAAEQVQESADTILEMVIMEFAFRTWVREKREWLNSDDLDELRREVQTALGTAKWQLEEFEKAVGVSYRSRSEEHALERHRMFIAAIGNQISHVEAVLRESYDKVGKRPLRWVNLNKEECNDLAAFLSGISQVPHSAKTESSVCRSSAKSYTFETRERATEEINRTSSCSSSNSFKMKGGKFANSVDMKESLGRVDDALCKMDTTTKARRASPPTAPDLQIVITNENHEKKQSVTSLEVTKKGKSGSVFLKRGCGIFSQVSIQGAA

Homology

[Close]

BLAST of CmaCh12G008790.1 vs. TAIR 10
Match: AT4G30240.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 164.9 bits (416), Expect = 9.7e-41
Identity = 91/170 (53.53%), Postives = 116/170 (68.24%), Query Frame = 0


Query: 1   MLDANRFDLWKKDGLFSAAEQVQESADTILEMVIMEFAFRTWVREKREWLNSDDLDELRR 60
           M+ AN FDLW+KD  FSAAE+VQESAD      IME A+R W +EKR+   S + DEL +
Sbjct: 1   MMVANSFDLWQKDVFFSAAEEVQESAD------IMESAYRLWFKEKRDGRVSVESDELCK 60

Query: 61  EVQTALGTAKWQLEEFEKAVGVSYRSRSEEHALERHRMFIAAIGNQISHVEAVLRESYDK 120
           E+Q AL TAKWQLEEFE+AV +S+ +  ++  L RH+ F+ AI NQI  VE+ L ES  +
Sbjct: 61  ELQAALSTAKWQLEEFERAVSLSHGNCRDDTTLTRHKQFVTAIENQIYQVESTLLESLSE 120

Query: 121 VGKRPLRWVNLNKEECNDLAAFLSGISQVPHSAKTESSVCRSSAKSYTFE 171
            GK+PLRWV+LNKEE +DLA FLSG SQ   S  ++S   R S+ S   E
Sbjct: 121 NGKQPLRWVDLNKEERDDLAMFLSGSSQTSESLNSDSINLRDSSTSSVAE 164

[Close]

BLAST of CmaCh12G008790.1 vs. TAIR 10
Match: AT2G18860.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 152.1 bits (383), Expect = 6.5e-37
Identity = 108/263 (41.06%), Postives = 151/263 (57.41%), Query Frame = 0


Query: 1   MLDANRFDLWKKDGLFSAAEQVQESADTILEMVIMEFAFRTWVREKREWLNSDDLDELRR 60
           M+  N FDLW+KD  FSAAE+VQ+S D      IME A+R W+REK+        DE+ +
Sbjct: 1   MMVVNSFDLWQKDVFFSAAEEVQKSTD------IMESAYRLWIREKK--------DEICK 60

Query: 61  EVQTALGTAKWQLEEFEKAVGVSY-RSRSEEHALERHRMFIAAIGNQISHVEAVLRESYD 120
           E+Q ALGTAKWQLEEFEKAV +S+ R    + +  RH+ F+ AI NQI  VE  L+E+Y 
Sbjct: 61  ELQAALGTAKWQLEEFEKAVRLSHKRCGDNDSSSTRHKQFVTAIENQIHRVETSLQEAYS 120

Query: 121 KVGKRPLRWVNLNKEECNDLAAFLSGISQVPHSAKTESSVCRSSAKSYTFETRERATEEI 180
           + GK+PLRWV+LN+EE +DLA FLSG S+   S   ESS+   S +S    T     E +
Sbjct: 121 ENGKKPLRWVDLNEEERDDLAMFLSGSSRTSQSFSGESSI--KSRES----TNSSLVENV 180

Query: 181 NRTSSCSSSNSFKMKGGKFANSVDMKESLGRVDDALCKMDTTTKARRASPPTAPDLQIVI 240
              S+  +    K+ G      +D++E   RV     +     + R  S P    L+I++
Sbjct: 181 MEVSAKVTFKKAKVYGDGSECVIDIEE---RVTPGQAEKSVGLR-RIWSSPNFNSLRIIV 239

Query: 241 T-NENHEKKQS-VTSLEVTKKGK 261
              +N E+K++ V  +E T K K
Sbjct: 241 PGGDNEEEKETLVAQIEATPKVK 239

[Close]

BLAST of CmaCh12G008790.1 vs. TAIR 10
Match: AT2G18860.2 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 122.9 bits (307), Expect = 4.2e-28
Identity = 91/234 (38.89%), Postives = 132/234 (56.41%), Query Frame = 0


Query: 30  LEMVIMEFAFRTWVREKREWLNSDDLDELRREVQTALGTAKWQLEEFEKAVGVSY-RSRS 89
           L++  ME A+R W+REK+        DE+ +E+Q ALGTAKWQLEEFEKAV +S+ R   
Sbjct: 5   LQLKRMESAYRLWIREKK--------DEICKELQAALGTAKWQLEEFEKAVRLSHKRCGD 64

Query: 90  EEHALERHRMFIAAIGNQISHVEAVLRESYDKVGKRPLRWVNLNKEECNDLAAFLSGISQ 149
            + +  RH+ F+ AI NQI  VE  L+E+Y + GK+PLRWV+LN+EE +DLA FLSG S+
Sbjct: 65  NDSSSTRHKQFVTAIENQIHRVETSLQEAYSENGKKPLRWVDLNEEERDDLAMFLSGSSR 124

Query: 150 VPHSAKTESSVCRSSAKSYTFETRERATEEINRTSSCSSSNSFKMKGGKFANSVDMKESL 209
              S   ESS+   S +S    T     E +   S+  +    K+ G      +D++E  
Sbjct: 125 TSQSFSGESSI--KSRES----TNSSLVENVMEVSAKVTFKKAKVYGDGSECVIDIEE-- 184

Query: 210 GRVDDALCKMDTTTKARRASPPTAPDLQIVIT-NENHEKKQS-VTSLEVTKKGK 261
            RV     +     + R  S P    L+I++   +N E+K++ V  +E T K K
Sbjct: 185 -RVTPGQAEKSVGLR-RIWSSPNFNSLRIIVPGGDNEEEKETLVAQIEATPKVK 220

[Close]

BLAST of CmaCh12G008790.1 vs. TAIR 10
Match: AT1G27700.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-27
Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 8   DLWKKDGLFSAAEQVQESADTILEMVIMEFAFRTWVREKREWLNSDDLDELRREVQTALG 67
           D W+KD  F AAE+VQESAD       ME A+RTW+  KR+     D ++L R++  ALG
Sbjct: 6   DRWEKDPFFPAAEEVQESADR------MESAYRTWLNGKRDSSKVWDSEQLHRDLHAALG 65

Query: 68  TAKWQLEEFEKAVGVSYRSRSEEHALERHRMFIAAIGNQISHVEAVLRESYDKVGKRPLR 127
           T KWQL+EF+KAV  SY +R  +   +RHR F   +  Q+S +E  L+E+    GK   R
Sbjct: 66  TTKWQLDEFQKAVKSSYDNRLSDETRDRHREFTFVMEAQVSKIEKSLKEAAQSDGKGTPR 125

Query: 128 WVNLNKEECNDLAAFLSGISQVPHSAKTESSVCRSSAKSYTF 170
           WV L++++ N+LA FL+G S+   SAK   +  R +A +  F
Sbjct: 126 WVRLDEDDRNELALFLTGPSE---SAKANPNGHRRTASAAEF 158

The following BLAST results are available for this feature:

BLAST of CmaCh12G008790.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh12G008790.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30240.1	9.7e-41	53.53	Syntaxin/t-SNARE family protein	[more]
AT2G18860.1	6.5e-37	41.06	Syntaxin/t-SNARE family protein	[more]
AT2G18860.2	4.2e-28	38.89	Syntaxin/t-SNARE family protein	[more]
AT1G27700.1	2.7e-27	42.59	Syntaxin/t-SNARE family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015260	Syntaxin 6, N-terminal	PFAM	PF09177	Syntaxin-6_N	coord: 13..111 e-value: 8.2E-14 score: 52.0
None	No IPR available	GENE3D	1.20.58.90		coord: 11..118 e-value: 3.9E-10 score: 41.7
None	No IPR available	PANTHER	PTHR34949	OS05G0443700 PROTEIN	coord: 1..275
None	No IPR available	PANTHER	PTHR34949:SF3	SYNTAXIN/T-SNARE FAMILY PROTEIN	coord: 1..275
IPR010989	SNARE	SUPERFAMILY	47661	t-snare proteins	coord: 12..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh12G008790	CmaCh12G008790	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008790.1:exon:309	CmaCh12G008790.1:exon:309	exon
CmaCh12G008790.1:exon:310	CmaCh12G008790.1:exon:310	exon
CmaCh12G008790.1:exon:311	CmaCh12G008790.1:exon:311	exon
CmaCh12G008790.1:exon:312	CmaCh12G008790.1:exon:312	exon
CmaCh12G008790.1:exon:313	CmaCh12G008790.1:exon:313	exon
CmaCh12G008790.1:exon:314	CmaCh12G008790.1:exon:314	exon
CmaCh12G008790.1:exon:315	CmaCh12G008790.1:exon:315	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008790.1:five_prime_utr	CmaCh12G008790.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008790.1:cds	CmaCh12G008790.1:cds	CDS
CmaCh12G008790.1:cds	CmaCh12G008790.1:cds_2	CDS
CmaCh12G008790.1:cds	CmaCh12G008790.1:cds_3	CDS
CmaCh12G008790.1:cds	CmaCh12G008790.1:cds_4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008790.1:three_prime_utr	CmaCh12G008790.1:three_prime_utr	three_prime_UTR
CmaCh12G008790.1:three_prime_utr	CmaCh12G008790.1:three_prime_utr_2	three_prime_UTR
CmaCh12G008790.1:three_prime_utr	CmaCh12G008790.1:three_prime_utr_3	three_prime_UTR
CmaCh12G008790.1:three_prime_utr	CmaCh12G008790.1:three_prime_utr_4	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008790.1	CmaCh12G008790.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane