CmaCh12G008540.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G008540.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionzinc finger protein 830-like isoform X1
LocationCma_Chr12: 6320474 .. 6325458 (+)
Sequence length1721
RNA-Seq ExpressionCmaCh12G008540.1
SyntenyCmaCh12G008540.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAAAATGAATTCCTCTGTTCTCTCTCCCCTTTTCTCTACTGCACCTCTCCTTCTCACGCGCTCATCAATGGCGGTGCTTAAGATCCTCTTCTTCTTTTTCCGTTATGCTTAGCCTTCCGCCTCTGCCTCTCTCCGGAATCCGTCTCCTCCGCCTCCTTCTTTGATTTTTCTTTTTCCGTGATCGGACAATGGAGTTCAGGTTCCGTGCCGGCGATCATCGACCACCGCCACCGACTCCGGCGCTGCAGTATGCTTCACCTTGGCCGCCGGCTGTTCACTGCTTATCTAAGCAAGGATTTTCAGGTTTGTGTTTAAATCTATATGGACTCTGTGAGAATCAAGCGGAGTTGAAGGAACTGGAGAGGCTCTGGCTTTAATATTTCTTTTGGTTTTGGATGTTTCGGATAGTGAATAGTTTTGTTTGGAATAGAGTAATTTTTTTATTGCATTGGAACTGTGGCCTGTATTTAGCTTTTGCGATGAGTAATTTGATTACGATCTGAAATTTGGAAGGAATTCAAATTTTAGGGAAAGGAGTTCTACTTTCATTTTTTTGTGACTAATTTTACTCTTTTCGATTACGGAAGAAGAAGTCGTGAGAATTTTGTTCTGCACGATTTCCCCTCTCTATGCGTTTTTCTCGGTAGCCGAATGGATTATCTCATAAGTTCTTTTTTATTTTGTTTGTCTAACCGTTGTACTGTAGATCAAGCATTTGAGGAATCTCAGACTTCTCTTCGTTTTCTTCACTCTTTCTGTTTTTATTGATTTTTTATTTTCGATTTCTTGATGGATTCAACAGACGCCTGTCTCAGAGGAAGCACGAATATCATCGCCGATAGAAAGCCGTTCGATACCGACGAAGTGATGCATTGCGAGATGGAGTTGATGCGATTGAGAAAAGAGAAATTACTGGTGGAGATTGAACGACAGCAGTTTCTGAAAGAGGACGCGAGGAGAGAACTAGTGTTGTTCGAACGAGAGATGGCGATTCGAGGCTATATTTTCCACAGACACAACCGATGGGGAGCGCCGTTCAGCGCACCGGCAGCGCCATTGTCATTGCCGTCTTCAGCAACAGTGGTGCAGTCGTCCAATGAATGGCCGAAGGTCGAGCAACTGGAAAGTTCTGATCGCCTTGGGTTTGGTCCAGGGCCGTTGCCGCCGCGGGTTCAGCCATTAATGGCAGATGACAAGACGGAGCGTCAGGTACTGCAGAATGATGAAAGAGAACTCATTATACTGGTTTGACTCTCTCTCTCTCTCTCTATATATATATAATATTATATCAGTTTGTTACCTTCTTTTTTTCTCATCAACGGTGAAACCATGTTTTAGGGTTTTTCTTGATTTTAACTTTTTTTAAAATGTTTTTGAAGAATTAAAATCACTTTTTTATGACTATCTTTTCCTAAGAATTATTAATTTAGGGACTATTTGATAATATTTCTATTTTCTTGTTTCATTTATTTTAAATTTATATGTAAAAAAATTTATATAAAACCTACTTGTGTTGGATAAAAGTAGCACCTAAACTAATTTAGGGAATGATCATAGGTTTATAATTAAGAAATATTTTATCTATTGGTATGAGGTCTTTTGAGAAAGCTCAAAGCAAAGTCATGAGAGCTTATGCTCAAAGTAGACAATATCAATCGAGAGTCATATTCATCTGACATATTGTACCTAAGTAAAAAATGATAAATAATATTTTTTTTATGTGATTTTAATTTGAGTAAGTGATTTTTTGAAAATTCTATGACGTTTGGTGATTAAAAGAAGTATCTTTAGAGGGTTACTTTAGACAAATCAAGAAATGATGTGTGGTTTGAAACAAGGGAATTACTTTTAAAATTTTCATTTGGGGAAGATTTGAAAGGAATGTAATTGAAGTTGGTTTTGGATCTTCTCTAGAAAGTAAATGAATCACTTGAAACCTTTGGTATGTGTTTAACGTGTGTAGAAGTTTAAGAACCAAATTTCAAACTTCTAAATATGCTTATATGATATTTGATTACAAACATTTAAAATAATTATGAACTTTTCTTTAATTTGAAAATTGAAAAGACATATTTTCTTTTTCATTTTCAAATATTATACCAATTATATGGGTAGGAGTGATGGTCAGTTTTTATTTCTCCAAACAAGGAGTAAGTGGTAAGGAATAATTGCACCCCCTATGGTCATTTATTTGGCTCATGACTCTCATCTATTTGGTTGATAACCCTTTTGGTTCATGACTCTCATCTATTTGGTTGATAACTCTTTTGGTTCATGACTCGGATCTATTTGGTTGAATAACTCTTTTGGTTCATGACTCTGATCTATTTGGCTGAATAACCCTTTTGGTTCATGACTCTGATCTATTAGGTTGAATAACCCTTTTTGGTTCATAACTCTTATTTACTTGGTTCATAATCCTTTTAGTTCATCTGATACATGAATCAACTTGATTATATGACATTAATGTTTCTATGCCTATATAGAGGGGTCTCTACGATAGTTGAGATGTATTGAGTTTGAGTGTTCTTTTGTATTGGTTGAGTGACATTTGGAAGGAACTTTGTTGAGACACTAGTGTGAGAGTGTGAGGTATACACTTTGTAAACGCTTGGATTATTGAGATTGGTTACTACCCATGGATGTAGGGGAATTTTTTATCTCCGAATCATGTGAATCTTTGTCTCTTTGTTTAATTTCTATTTGTGGGTGTGTGAGTGCGATCGATCCGTTTTTATCAACAATTGGTATCAGAGCATTTTGGTTGAGGCATTTGGGATATTCTGATGAAGTCGACCACGAGACGTGCTCACACTCACAATCAATTATCGAAGACAAGTTTCTCATTATAAACTTCTCATCAATCGAACCACGCTTGTTTAGAAACGTGTCTTCTATAATTGATGGTGAGTGTGAGCACGTCTTGTGGTCAATGAAGTTAAATCTTTTAGAAAACCCCAAATGCCACAACCAAAATGCTCTAATATCAATTGTTGACGGAAACGGAAGATACATTGATCGCACTTGTAGACCCACAAAAAGACACAAAGTTTTACGTGGTTCAGATATAAGAAATTCCCCTAGATCCACAAGTAGCAACCAATCTCAATAATCTACAAAGTCTCTCAATAAAATTTCCCCCAAATGTCATTCAACAAATACAAAATGACACTCAAACTCAATACATCTCAATCATCCTAGACCACCCTTTATATAGGCATAAAGCATTAATGTCATACATGATTCATGTGTCAAAATGAAAGATCTAAATAAAGGAGAATTATGAACCAAATAAATGACAATACATGCATATGAGATGCATGAACCTACGAAGCTTCGTGAAAACTTGCAACAATCTCTACGGAAGATCTTCAAACATAGCCGAAGTGTAGGCCGGGTAATCCTCGAAGGAAATCCGCCGAAACATTATACGGTTCCTAAATCTGCTTATTCAGATTTGGCTGCCACCAAACAACTTCTGTTCTACAACTGTTCCAATAGTGGCATTATTTATAGATGAAAATATATTACACAGAAAGATATTTGTGGGTGAACTGGCTTCCTTGAAATCGAGCGGTTTTTCAATCTGTTCTTTGATTTCTTCATTTAGGTGAAATTATGGCACTCCGGAGTTTGATGATGGGGTTTGTACATACAAAAAAAATAAGCTATTTGTATGCAGTGTGCGAGTGTGTTGAAAGCTGCCTTTCTAATTGCTTCCTTTCATTCCATTTATGATATTGTAAACGTCATGTTTAGGGAGTTAATTCCTTATGAATTTGTGAATATTTTGCAGGAAAAACCCGACCCAAATGTATTTAGAGAAAAGAGGAAAGCCGAGACGCCATCGACTTTCACCAACGACGTCCAACCATTCAGTGTGAAGCAAAATCCCAAGGATGAGTGGATTTGTGTACTGTGTCAAGTTACCGTGTTGAGCCAAAGTACTTTTGATCAACACCTTCATGGCAAGAAGCACAAACGCAAAGAAGCATGTCTGAGGGCTCAAAAGGCGAGCAACGTTGCGCCCGAGCCATTGCCGAACAAAAGGAGGAAGCTAGTTGAAGTCGAGGCAACGTCTGGCTTGACATGTGCAGAAGTGAAGGAGTCAAAAGATGGAGAAACTCTTCAATGTGAGAAAACAGGAAGTAGTTCTGATTTGAAATTAGACGAAAACTTGATAACTGAGGATGTTCTTGTGGGGAAAAAGAAGTTCAAGTTTTGGTGTGAAAAGTGCAAAGTTGGTGCTTTTGCTACAGAGGTGATGGTAGATCATCTGAATGGGAAGAAGCACAAGGCAAGTCTTCGATAAGAAGAAAGCTGAGAGTGCAGCAGCTGTATGTAGATACTCGACAGAAGAGTCGAGTCACGGTCTACGATGACAGGTGTTGCCCCGTGGTTCGGCAGATGAAAAAGGTTAGTGAGGTGTTTCTGATGTTCTTTAAAATGTGTCAATAAAATAGATAAGAGCTAGAAAATCTAACCACATCGAGGCAGGAAAGAGAATTTAGACTTAATTTTAGAATCGTGAAGCTAATTGGAAGTACTATTACAATTGACTTCGTCTATGATTCTAGCTCGTTGTTATGGTCACGGTGGTGATTACTGAAAATTATTTTCATATGGCAAGGGTGGGAGCAAAGAGCACGGTCATGGTCATGGAGCAACTTAGAGTTTATGATTTCTTATTTATTTGAGTTTATGATTTCTTATTTATTTAAGATGCATTGAGTCAATTTTAGTTGTTTGAAATTTTGTTAGGGCACCCTTAGTTATGGGAACAATGAAATTTGGACCGCGATTCGTGTTCTTTTAAATTGTCTCGTTGTTGAACTATTTGGTTAGATTGCACTGGCTTAAATTTTTTTTTTAGGATGGAGTATTTGAAAATTTAGGAGAGGTCGATCGCCTAAAACAAATGTCCATTAGAGTTAAATCAAATGTCCATTTTACTCTTGTAATTACATCTTACATCTCCAAGTA

mRNA sequence

CACAAAATGAATTCCTCTGTTCTCTCTCCCCTTTTCTCTACTGCACCTCTCCTTCTCACGCGCTCATCAATGGCGGTGCTTAAGATCCTCTTCTTCTTTTTCCGTTATGCTTAGCCTTCCGCCTCTGCCTCTCTCCGGAATCCGTCTCCTCCGCCTCCTTCTTTGATTTTTCTTTTTCCGTGATCGGACAATGGAGTTCAGGTTCCGTGCCGGCGATCATCGACCACCGCCACCGACTCCGGCGCTGCAGTATGCTTCACCTTGGCCGCCGGCTGTTCACTGCTTATCTAAGCAAGGATTTTCAGACGCCTGTCTCAGAGGAAGCACGAATATCATCGCCGATAGAAAGCCGTTCGATACCGACGAAGTGATGCATTGCGAGATGGAGTTGATGCGATTGAGAAAAGAGAAATTACTGGTGGAGATTGAACGACAGCAGTTTCTGAAAGAGGACGCGAGGAGAGAACTAGTGTTGTTCGAACGAGAGATGGCGATTCGAGGCTATATTTTCCACAGACACAACCGATGGGGAGCGCCGTTCAGCGCACCGGCAGCGCCATTGTCATTGCCGTCTTCAGCAACAGTGGTGCAGTCGTCCAATGAATGGCCGAAGGTCGAGCAACTGGAAAGTTCTGATCGCCTTGGGTTTGGTCCAGGGCCGTTGCCGCCGCGGGTTCAGCCATTAATGGCAGATGACAAGACGGAGCGTCAGGTACTGCAGAATGATGAAAGAGAACTCATTATACTGGAAAAACCCGACCCAAATGTATTTAGAGAAAAGAGGAAAGCCGAGACGCCATCGACTTTCACCAACGACGTCCAACCATTCAGTGTGAAGCAAAATCCCAAGGATGAGTGGATTTGTGTACTGTGTCAAGTTACCGTGTTGAGCCAAAGTACTTTTGATCAACACCTTCATGGCAAGAAGCACAAACGCAAAGAAGCATGTCTGAGGGCTCAAAAGGCGAGCAACGTTGCGCCCGAGCCATTGCCGAACAAAAGGAGGAAGCTAGTTGAAGTCGAGGCAACGTCTGGCTTGACATGTGCAGAAGTGAAGGAGTCAAAAGATGGAGAAACTCTTCAATGTGAGAAAACAGGAAGTAGTTCTGATTTGAAATTAGACGAAAACTTGATAACTGAGGATGTTCTTGTGGGGAAAAAGAAGTTCAAGTTTTGGTGTGAAAAGTGCAAAGTTGGTGCTTTTGCTACAGAGGTGATGGTAGATCATCTGAATGGGAAGAAGCACAAGGCAAGTCTTCGATAAGAAGAAAGCTGAGAGTGCAGCAGCTGTATGTAGATACTCGACAGAAGAGTCGAGTCACGGTCTACGATGACAGGTGTTGCCCCGTGGTTCGGCAGATGAAAAAGGGTGGGAGCAAAGAGCACGGTCATGGTCATGGAGCAACTTAGAGTTTATGATTTCTTATTTATTTGAGTTTATGATTTCTTATTTATTTAAGATGCATTGAGTCAATTTTAGTTGTTTGAAATTTTGTTAGGGCACCCTTAGTTATGGGAACAATGAAATTTGGACCGCGATTCGTGTTCTTTTAAATTGTCTCGTTGTTGAACTATTTGGTTAGATTGCACTGGCTTAAATTTTTTTTTTAGGATGGAGTATTTGAAAATTTAGGAGAGGTCGATCGCCTAAAACAAATGTCCATTAGAGTTAAATCAAATGTCCATTTTACTCTTGTAATTACATCTTACATCTCCAAGTA

Coding sequence (CDS)

ATGGAGTTCAGGTTCCGTGCCGGCGATCATCGACCACCGCCACCGACTCCGGCGCTGCAGTATGCTTCACCTTGGCCGCCGGCTGTTCACTGCTTATCTAAGCAAGGATTTTCAGACGCCTGTCTCAGAGGAAGCACGAATATCATCGCCGATAGAAAGCCGTTCGATACCGACGAAGTGATGCATTGCGAGATGGAGTTGATGCGATTGAGAAAAGAGAAATTACTGGTGGAGATTGAACGACAGCAGTTTCTGAAAGAGGACGCGAGGAGAGAACTAGTGTTGTTCGAACGAGAGATGGCGATTCGAGGCTATATTTTCCACAGACACAACCGATGGGGAGCGCCGTTCAGCGCACCGGCAGCGCCATTGTCATTGCCGTCTTCAGCAACAGTGGTGCAGTCGTCCAATGAATGGCCGAAGGTCGAGCAACTGGAAAGTTCTGATCGCCTTGGGTTTGGTCCAGGGCCGTTGCCGCCGCGGGTTCAGCCATTAATGGCAGATGACAAGACGGAGCGTCAGGTACTGCAGAATGATGAAAGAGAACTCATTATACTGGAAAAACCCGACCCAAATGTATTTAGAGAAAAGAGGAAAGCCGAGACGCCATCGACTTTCACCAACGACGTCCAACCATTCAGTGTGAAGCAAAATCCCAAGGATGAGTGGATTTGTGTACTGTGTCAAGTTACCGTGTTGAGCCAAAGTACTTTTGATCAACACCTTCATGGCAAGAAGCACAAACGCAAAGAAGCATGTCTGAGGGCTCAAAAGGCGAGCAACGTTGCGCCCGAGCCATTGCCGAACAAAAGGAGGAAGCTAGTTGAAGTCGAGGCAACGTCTGGCTTGACATGTGCAGAAGTGAAGGAGTCAAAAGATGGAGAAACTCTTCAATGTGAGAAAACAGGAAGTAGTTCTGATTTGAAATTAGACGAAAACTTGATAACTGAGGATGTTCTTGTGGGGAAAAAGAAGTTCAAGTTTTGGTGTGAAAAGTGCAAAGTTGGTGCTTTTGCTACAGAGGTGATGGTAGATCATCTGAATGGGAAGAAGCACAAGGCAAGTCTTCGATAA

Protein sequence

MEFRFRAGDHRPPPPTPALQYASPWPPAVHCLSKQGFSDACLRGSTNIIADRKPFDTDEVMHCEMELMRLRKEKLLVEIERQQFLKEDARRELVLFEREMAIRGYIFHRHNRWGAPFSAPAAPLSLPSSATVVQSSNEWPKVEQLESSDRLGFGPGPLPPRVQPLMADDKTERQVLQNDERELIILEKPDPNVFREKRKAETPSTFTNDVQPFSVKQNPKDEWICVLCQVTVLSQSTFDQHLHGKKHKRKEACLRAQKASNVAPEPLPNKRRKLVEVEATSGLTCAEVKESKDGETLQCEKTGSSSDLKLDENLITEDVLVGKKKFKFWCEKCKVGAFATEVMVDHLNGKKHKASLR
Homology
[Close]
BLAST of CmaCh12G008540.1 vs. TAIR 10
Match: AT5G61190.1 (putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain )

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-05
Identity = 39/137 (28.47%), Postives = 57/137 (41.61%), Query Frame = 0 

Query: 222 EWICVLCQVTVLSQSTFDQHLHGKKHKRKEACLRAQKASNVAPEPLPNKRRKLVEVEATS 281
           E++C++C V   SQ  F+ HL GKKH    A + +Q  + +    L  K   + E E  S
Sbjct: 367 EFVCLMCNVVCQSQIVFNSHLRGKKH----ANMLSQSEALIVSTKLQEK--GVGEKEQPS 426

Query: 282 GLTCAEVKESKDGETLQCEKTGSSSDLKLDE--NLITEDVLVGKKKFKFWCEKCKVGAFA 341
                   +S+  +  Q          K DE      E   +     K+ C  C VG  +
Sbjct: 427 ETVAELQLQSQKAQEKQVLVDSKKLPEKGDEVKGQPKEMTALRNASAKYICRMCNVGCHS 486

Query: 342 TEVMVDHLNGKKHKASL 357
             V   HL G+KH A+L
Sbjct: 487 PIVFETHLRGQKHAANL 497

The following BLAST results are available for this feature:
BLAST of CmaCh12G008540.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G008540.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G61190.11.7e-0528.47putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..99
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 197..252
e-value: 3.9E-9
score: 37.9
coord: 308..357
e-value: 2.2E-6
score: 29.1
NoneNo IPR availablePANTHERPTHR47487OS06G0651300 PROTEIN-RELATEDcoord: 1..356
NoneNo IPR availablePANTHERPTHR47487:SF8OS06G0651300 PROTEINcoord: 1..356
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 220..254
e-value: 5.1E-4
score: 29.3
coord: 325..357
e-value: 6.2
score: 5.9
IPR022755Zinc finger, double-stranded RNA bindingPFAMPF12171zf-C2H2_jazcoord: 223..248
e-value: 3.7E-7
score: 30.3
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 213..256

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh12G008540CmaCh12G008540gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G008540.1:exon:386CmaCh12G008540.1:exon:386exon
CmaCh12G008540.1:exon:387CmaCh12G008540.1:exon:387exon
CmaCh12G008540.1:exon:388CmaCh12G008540.1:exon:388exon
CmaCh12G008540.1:exon:389CmaCh12G008540.1:exon:389exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G008540.1:five_prime_utrCmaCh12G008540.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G008540.1:cdsCmaCh12G008540.1:cdsCDS
CmaCh12G008540.1:cdsCmaCh12G008540.1:cds_2CDS
CmaCh12G008540.1:cdsCmaCh12G008540.1:cds_3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G008540.1:three_prime_utrCmaCh12G008540.1:three_prime_utrthree_prime_UTR
CmaCh12G008540.1:three_prime_utrCmaCh12G008540.1:three_prime_utr_2three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh12G008540.1CmaCh12G008540.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding